47 lines
2.2 KiB
Python
47 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RPtw(RPackage):
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"""Parametric Time Warping aligns patterns, i.e. it aims to put
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corresponding features at the same locations. The algorithm
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searches for an optimal polynomial describing the warping. It is
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possible to align one sample to a reference, several samples to
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the same reference, or several samples to several references.
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One can choose between calculating individual warpings, or one
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global warping for a set of samples and one reference. Two
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optimization criteria are implemented: RMS (Root Mean Square
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error) and WCC (Weighted Cross Correlation). Both warping of
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peak profiles and of peak lists are supported."""
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homepage = "https://cran.r-project.org/package=ptw"
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url = "https://cran.rstudio.com/src/contrib/ptw_1.9-12.tar.gz"
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list_url = "https://cran.rstudio.com/src/contrib/Archive/ptw"
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version('1.9-12', 'ddff887752d789ea72db3ee235ae7c67')
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depends_on('r-nloptr', type=('build', 'run'))
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