49 lines
2.4 KiB
Python
49 lines
2.4 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RMergemaid(RPackage):
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"""The functions in this R extension are intended for cross-study
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comparison of gene expression array data. Required from the user is
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gene expression matrices, their corresponding gene-id vectors and
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other useful information, and they could be 'list','matrix', or
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'ExpressionSet'. The main function is 'mergeExprs' which transforms
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the input objects into data in the merged format, such that common
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genes in different datasets can be easily found. And the function
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'intcor' calculate the correlation coefficients. Other functions use
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the output from 'modelOutcome' to graphically display the results and
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cross-validate associations of gene expression data with survival."""
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homepage = "https://www.bioconductor.org/packages/MergeMaid/"
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git = "https://git.bioconductor.org/packages/MergeMaid.git"
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version('2.48.0', commit='aee89c523fcafff4c166ff3db4fff90df16a1ed4')
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depends_on('r-survival', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-mass', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@2.48.0')
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