4b1c356a27
* trnascan-se: add and configure infernal dep * trnascan-se: use patch() for infernal config
23 lines
799 B
Python
23 lines
799 B
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class TrnascanSe(AutotoolsPackage):
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"""Seaching for tRNA genes in genomic sequence"""
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homepage = "http://lowelab.ucsc.edu/tRNAscan-SE/"
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url = "http://trna.ucsc.edu/software/trnascan-se-2.0.0.tar.gz"
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version('2.0.0', sha256='0dde1c07142e4bf77b21d53ddf3eeb1ef8c52248005a42323d13f8d7c798100c')
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depends_on('infernal@1.1.2', type='run', when='@2.0.0')
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def patch(self):
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filter_file('infernal_dir: {bin_dir}',
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'infernal_dir: %s' % self.spec['infernal'].prefix.bin,
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'tRNAscan-SE.conf.src', string=True)
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