52 lines
2.2 KiB
Python
52 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PacbioDextractor(MakefilePackage):
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"""The Dextractor and Compression Command Library. This is a special
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fork required by some pacbio utilities."""
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homepage = "https://github.com/PacificBiosciences/DEXTRACTOR"
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url = "https://github.com/PacificBiosciences/DEXTRACTOR"
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version('2016-08-09',
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git='https://github.com/PacificBiosciences/DEXTRACTOR.git',
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commit='89726800346d0bed15d98dcc577f4c7733aab4b1')
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depends_on('hdf5')
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depends_on('gmake', type='build')
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def edit(self, spec, prefix):
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mkdirp(prefix.bin)
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makefile = FileFilter('Makefile')
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makefile.filter('PATH_HDF5\s*=\s*/sw/apps/hdf5/current',
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'PATH_HDF5 = ' + spec['hdf5'].prefix)
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makefile.filter('PATH_HDF5\*s=\s*/usr/local/hdf5', '')
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makefile.filter('DEST_DIR\s*=\s*~/bin', 'DEST_DIR = ' + prefix.bin)
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gmf = FileFilter('GNUmakefile')
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gmf.filter('rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin',
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'cp ${ALL} ' + prefix.bin)
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