25 lines
809 B
Python
25 lines
809 B
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Bamaddrg(MakefilePackage):
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"""bamaddrg adds read groups to input BAM files,
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streams BAM output on stdout"""
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homepage = "https://github.com/ekg/bamaddrg"
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url = "https://github.com/ilbiondo/bamaddrg/archive/v0.1.tar.gz"
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git = "https://github.com/ilbiondo/bamaddrg.git"
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version('0.1', sha256='725a689d8326d72f865837b231005a9211d6c70a25b7a3a754df4f90d2996355')
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depends_on("bamtools", type="build")
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def setup_build_environment(self, env):
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env.set('BAMTOOLS_ROOT', self.spec['bamtools'].prefix)
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env.set('PREFIX', self.prefix)
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