40 lines
1.8 KiB
Python
40 lines
1.8 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RSomaticsignatures(RPackage):
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"""Somatic Signatures.
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The SomaticSignatures package identifies mutational signatures of single
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nucleotide variants (SNVs). It provides a infrastructure related to the
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methodology described in Nik-Zainal (2012, Cell), with flexibility in
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the matrix decomposition algorithms."""
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homepage = "https://bioconductor.org/packages/SomaticSignatures"
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git = "https://git.bioconductor.org/packages/SomaticSignatures.git"
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version('2.20.0', commit='dbedc30d92b600b3a17de596ebe38d15982c70c6')
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version('2.18.0', commit='facccd67eee5202fcbe6ad32e667546546e7ccff')
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version('2.16.0', commit='4ae348d9fa096c0ec307df95149991edf6044977')
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version('2.14.0', commit='b12d24f86e96a7c6a17cbbad21ca14fa3aa7c60f')
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version('2.12.1', commit='932298c6877d076004de5541cec85a14e819517a')
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depends_on('r@3.1.0:', type=('build', 'run'))
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depends_on('r-variantannotation', type=('build', 'run'))
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depends_on('r-genomicranges', type=('build', 'run'))
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depends_on('r-nmf', type=('build', 'run'))
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-genomeinfodb', type=('build', 'run'))
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depends_on('r-biostrings', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-ggbio', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-pcamethods', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-proxy', type=('build', 'run'))
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