39 lines
1.3 KiB
Python
39 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import os
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class Tmhmm(Package):
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"""Transmembrane helices in proteins
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Note: A manual download is required for TMHMM.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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http://spack.readthedocs.io/en/latest/mirrors.html"""
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homepage = "http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm"
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url = "file://{0}/tmhmm-2.0c.Linux.tar.gz".format(os.getcwd())
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manual_download = True
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version('2.0c', '359db0c4ecf84d1ade5786abe844d54e')
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depends_on('perl', type='run')
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def patch(self):
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with working_dir('bin'):
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tmhmm = FileFilter('tmhmmformat.pl')
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tmhmm.filter('#!/usr/local/bin/perl -w',
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'#!/usr/bin/env perl')
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tmhmm = FileFilter('tmhmm')
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tmhmm.filter('#!/usr/local/bin/perl',
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'#!/usr/bin/env perl')
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def install(self, spec, prefix):
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install_tree('bin', prefix.bin)
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install_tree('lib', prefix.lib)
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