52 lines
2.0 KiB
Python
52 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Freebayes(MakefilePackage):
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"""Bayesian haplotype-based genetic polymorphism discovery and
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genotyping."""
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homepage = "https://github.com/ekg/freebayes"
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git = "https://github.com/ekg/freebayes.git"
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version('1.1.0', commit='39e5e4bcb801556141f2da36aba1df5c5c60701f',
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submodules=True)
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depends_on('cmake', type='build')
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depends_on('zlib')
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parallel = False
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def edit(self, spec, prefix):
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makefile = FileFilter('Makefile')
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b = prefix.bin
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makefile.filter('cp bin/freebayes bin/bamleftalign /usr/local/bin/',
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'cp bin/freebayes bin/bamleftalign {0}'.format(b))
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@run_before('install')
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def make_prefix_dot_bin(self):
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mkdir(prefix.bin)
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