37 lines
1.3 KiB
Python
37 lines
1.3 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from glob import glob
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from os import unlink
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from spack import *
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class PyDpGpCluster(PythonPackage):
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"""DP_GP_cluster clusters genes by expression over a time course using a
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Dirichlet process Gaussian process model."""
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homepage = "https://github.com/PrincetonUniversity/DP_GP_cluster"
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git = "https://github.com/PrincetonUniversity/DP_GP_cluster.git"
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version('2019-09-22', commit='eec12e74219f916aa86e253783905f7b5e30f6f4')
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depends_on('python@2.7:2.8', type=('build', 'run'))
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# pip silently replaces distutils with setuptools
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depends_on('py-setuptools', type='build')
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depends_on('py-cython', type='build')
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depends_on('py-gpy@0.8.8:0.9.9', type=('build', 'run'))
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depends_on('py-pandas', type=('build', 'run'))
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depends_on('py-numpy', type=('build', 'run'))
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depends_on('py-scipy@0.14:', type=('build', 'run'))
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depends_on('py-matplotlib', type=('build', 'run'))
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depends_on('py-scikit-learn', type=('build', 'run'))
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@run_before('install')
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def remove_cython_output(self):
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for f in glob('DP_GP/*.c'):
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unlink(f)
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