spack

History

Francesco Di Natale 4ef64b64d1 Add new versions of py-maestrowf (#13081 ) * Addition of 1.1.3 and 1.1.4 * Addition of conditional enum-34 installation. * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Addition of versioning for pyyaml. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Addition of enum34 back to older versions 1.1.3 and below.		2019-10-09 22:23:19 -05:00
..
abinit	ABINIT package: add version 8.10.3 (#12615 )	2019-08-29 13:59:26 -07:00
abyss	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
accfft
ack
activeharmony
acts-core
adept-utils
adios	ZFP: CMake Package (#12999 )	2019-10-01 23:28:36 -07:00
adios2	ZFP: CMake Package (#12999 )	2019-10-01 23:28:36 -07:00
adlbx
adol-c
aegean
aida
alan
albany
albert
alglib
allinea-reports
allpaths-lg
alquimia
alsa-lib
aluminum
amber
amg
amg2013
aml
amp
ampliconnoise
amrex
amrvis
andi
angsd
ant
antlr
ants	ants: missing zlib dependency and fix working directory in install. (#13010 )	2019-10-02 11:58:25 -05:00
aoflagger
aom
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx
archer
argobots
argp-standalone
argtable
aria2	new package: aria2 (#12318 )	2019-08-08 22:36:13 -05:00
arlecore
arm-forge
armadillo
arpack-ng
arrow
asagi	new package: asagi: create package.py (#11931 )	2019-08-13 11:13:41 -05:00
ascent
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core
athena	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
atk	bugfix: atk build requires libffi to detect glib	2019-08-29 11:00:01 -07:00
atlas	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
atom-dft
atompaw
atop
attr	new package: attr	2019-08-30 18:27:46 -07:00
augustus	Fixes for augustus package	2019-09-13 19:07:35 -07:00
autoconf
autodock-vina
autofact
autogen
automaded
automake
awscli
axel
axl
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap	update bbmap (#12721 )	2019-09-09 12:55:06 -05:00
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1
beast2
beast-tracer
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils	binutils: fix undefined symbol libintl_dgettext (#12770 )	2019-09-09 11:05:04 -05:00
bioawk
biobloom
biopieces
bismark
bison
bitmap
blasr	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
blasr-libcpp
blast2go
blast-legacy
blast-plus	Update target comparison semantic for a few packages (#12947 )	2019-09-26 10:25:12 +02:00
blat
blaze	blaze: converted to CMakePackage (#12357 )	2019-08-12 14:47:54 -05:00
blis	Fix installation permissions on BLIS and libflame libs (#12919 )	2019-09-23 18:54:47 -05:00
bliss
blitz
bmake
bmi
bml
bohrium
bolt	bolt: add a new version, 1.0rc2 (#12966 )	2019-09-28 13:27:33 -05:00
bookleaf-cpp
boost	boost: Use gcc toolset for bootstrap with Fujitsu compiler. (#12876 )	2019-10-03 22:20:55 -05:00
boostmplcartesianproduct
bowtie	bowtie: fix for aarch64, and bugfix about c++11-narrowing. (#12953 )	2019-09-28 13:44:02 -05:00
bowtie2	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
boxlib	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker	Add diamond dependency	2019-09-13 19:08:57 -07:00
branson
breakdancer	breakdancer: missing ncurses dependency. (#13011 )	2019-10-02 11:57:05 -05:00
breseq	breseq: fix dependency and limit compiler version. (#13013 )	2019-10-02 11:56:37 -05:00
bridger
brigand
brotli
bsseeker2
bucky
bumpversion
busco
butter
butterflypack	butterflypack package: add version 1.0.3 (#12927 )	2019-09-25 19:16:47 -07:00
bwa
bwtool
byobu
bzip2
c-blosc
c-blosc2	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
c-lime
cabana
caffe
cairo	cairo: add gobject variant (#12568 )	2019-08-27 10:29:50 +02:00
cairomm
caliper
callpath
camellia
camx	camx: add version 6.50 (#12437 )	2019-08-15 19:07:22 -05:00
candle-benchmarks
cantera	Add version 2.4.0 for cantera. (#12405 )	2019-08-13 19:18:38 -05:00
canu
cap3
capstone
cardioid	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
cares
casacore
cask
casper
catalyst	Update target comparison semantic for a few packages (#12947 )	2019-09-26 10:25:12 +02:00
catch
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
cbtf-lanl
ccache
ccfits
ccs-qcd	ccs-qcd: disable parallel builds (#12775 )	2019-09-10 14:19:09 +02:00
cctools	Update cctools to v7.0.18 (#13037 )	2019-10-03 18:57:20 -05:00
cdbfasta
cdd
cddlib
cdecimal
cdhit	cdhit: add zlib dependency. (#13015 )	2019-10-02 12:55:05 -05:00
cdo
ceed
cereal
ceres-solver
cfitsio
cgal
cgdb
cgm	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
cgns	CGNS: Add setting of RPATH on Darwin (#9984 )	2019-09-08 17:14:56 -05:00
channelflow
chapel	Update chapel to current (1.19 -> 1.20) (#12991 )	2019-10-01 11:47:57 -05:00
charliecloud	charliecloud package: add version 0.11 and test dependency (#12861 )	2019-09-20 18:01:40 -07:00
charmpp
chatterbug
check
chill	Chill package: build fixes (#12249 )	2019-08-21 18:39:06 -07:00
chlorop
chombo	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
chrpath
cinch
circos
cistem
citcoms
cityhash
clamav
clamr
clapack
claw	CLAW Compiler: added version 2.0.1 (#12878 )	2019-09-19 18:27:22 +02:00
cleaveland4
cleverleaf
clfft
clhep
clingo
cln
cloc
cloog
cloverleaf
cloverleaf3d
clp
clustalo
clustalw
cmake	cmake: add v3.15.{2,3} (#12847 )	2019-09-17 13:13:39 -06:00
cmocka
cmor
cnmem
cnpy	cnpy: add zlib dependency. (#13016 )	2019-10-02 12:54:31 -05:00
cntk
cntk1bitsgd
cnvnator
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
connect-proxy
constype
converge
coreutils
corset
cosmomc
cosp2
cotter
cowsay
cp2k	libint + cp2k: 2-stage build with 'tune' and 'fortran' variants (#12475 )	2019-10-02 21:31:19 +02:00
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cquery
cram
cromwell	new package: Cromwell (#12309 )	2019-08-08 22:39:00 -05:00
cromwell-womtool	new package: Cromwell (#12309 )	2019-08-08 22:39:00 -05:00
cryptopp
cryptsetup	Add headsup note re cryptsetup patch for v2.2.2 (#13076 )	2019-10-08 20:07:38 -05:00
cscope
csdp
ctffind
cub
cube	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303 )	2019-08-08 22:44:33 -05:00
cubelib	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303 )	2019-08-08 22:44:33 -05:00
cubew	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303 )	2019-08-08 22:44:33 -05:00
cuda	cuda: New version 10.1.243 (#12777 )	2019-09-10 10:52:55 -07:00
cuda-memtest
cudnn	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
cufflinks
cups
curl
cvs
cxxopts	New package: cxxopts (#13035 )	2019-10-05 20:36:59 -05:00
czmq	czmq package: add autoreconf stage (#12846 )	2019-09-20 18:14:41 -07:00
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces	Dataspaces: Fix Fetch URL, Savanna Spec (#13001 )	2019-10-01 14:52:44 -07:00
dateutils
davix
dbcsr
dbus
dcmtk
dd4hep
dealii	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear	denovogear: Add missing zlib depenbdency and fix open handling error. (#13017 )	2019-10-02 12:54:50 -05:00
dftfe
dia
dialign-tx	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
diamond	diamond: added version 0.9.25 (#12805 )	2019-09-13 07:37:52 +02:00
diffsplice	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
diffutils	diffutils: add missing libiconv dependency (#12866 )	2019-09-18 15:36:41 -05:00
dimemas
direnv	direnv: add info for version 2.20.0 (#13007 )	2019-10-01 22:34:14 -05:00
discovar
discovardenovo
dislin
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
draco
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst
dysco
ea-utils
easybuild	Add EasyBuild 4.0.0 (#13024 )	2019-10-03 16:48:42 +02:00
ebms
eccodes	eccodes package: apply cmake-patch only when @:2.10 (#12512 )	2019-08-23 15:09:28 -07:00
ecflow
eclipse-gcj-parser
ecp-io-sdk	Update ECP Data & Vis SDK packages (#13027 )	2019-10-03 10:05:02 -04:00
ecp-proxy-apps
ecp-viz-sdk	Update ECP Data & Vis SDK packages (#13027 )	2019-10-03 10:05:02 -04:00
ed
editline
editres
eem	New package: EEM (#12321 )	2019-08-22 16:05:22 -07:00
eigen
elasticsearch
elemental
elfutils
elk
elmer-fem
elpa	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
elsd
elsdc
elsi
emacs	emacs package: add version 26.2, jpeg dependency (#12632 )	2019-08-29 14:04:09 -07:00
ember
emboss
enchant	enchant@2.2.5: new package (#12349 )	2019-08-08 22:50:06 -05:00
energyplus
entrezdirect
environment-modules	environment-modules: add version 4.3.1 (#12893 )	2019-09-21 21:32:27 -05:00
eospac	eospac: laws.lanl.gov -> laws-green.lanl.gov (#12970 )	2019-09-27 17:28:38 -07:00
eqr
er
erfa
ermod
erne
es
esmf	esmf: Fix build with gcc@8: (#12678 )	2019-09-02 10:02:17 -05:00
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exiv2	new package: Exiv2	2019-08-21 16:47:13 -07:00
exmcutils
exodusii
exonerate
expat
expect	expect: fix darwin install name (#13042 )	2019-10-05 20:37:44 -05:00
express
extrae	extrae package: add 3.7.1, optionalise dyninst, papi (#11978 )	2019-08-30 11:28:14 -07:00
exuberant-ctags
eztrace
f18
f90cache
fabtests
falcon
fann	new package: FANN (#12614 )	2019-08-31 14:38:46 -05:00
faodel
fast-global-file-status
fasta	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
fastjar
fastmath
fastme
fastp	A new package: fastp. (#12671 )	2019-09-01 00:01:35 -05:00
fastphase
fastq-screen
fastqc
fastqvalidator	fastqvalidator: add zlib dependency and Removes erroneous deletes in Chromosome (#13030 )	2019-10-03 22:19:58 -05:00
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw	fftw: simplify the recipe and make use of specific targets (#12889 )	2019-10-03 22:32:42 -05:00
fgsl	fgsl: new version + fix for recent spack commit (#12790 )	2019-09-11 20:15:50 -05:00
figtree
fimpute
findutils
fio	libaio: fixed a condition that checks whether we are running on OS X (#12976 )	2019-10-01 15:35:50 -05:00
fish
fixesproto
flac
flang	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
flann
flash
flatbuffers
flatcc	flatcc: add version 0.5.3 (#12358 )	2019-08-09 21:32:10 -05:00
flecsale
flecsi	Correcting branch used for FleCSPH (#12865 )	2019-09-18 14:00:47 -06:00
flecsph	Correcting branch used for FleCSPH (#12865 )	2019-09-18 14:00:47 -06:00
flex
flibcpp	New package: flibcpp (Fortran bindings to C++ standard library) (#12926 )	2019-09-25 19:25:24 -07:00
flint
flit
fltk
flux-core
flux-sched
fluxbox
fmt
foam-extend
folly
font-util	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fpocket	Add fpocket (#12675 )	2019-09-02 09:51:53 -05:00
fqtrim
fr-hit
freebayes
freeglut
freeimage	freeimage: new package (#13049 )	2019-10-06 09:20:29 -05:00
freetype
freexl
fribidi	fribidi@1.0.5: new package (#12386 )	2019-09-08 17:10:39 -05:00
fseq
fsl
fslsfonts
fstobdf
fstrack
ftgl
fujitsu-mpi	Package/fujitsu mpi (#12807 )	2019-10-05 20:58:43 -05:00
funhpc
fyba
fzf
g4abla
g4emlow
g4ensdfstate
g4ndl
g4neutronxs
g4photonevaporation
g4pii
g4radioactivedecay
g4realsurface
g4saiddata
g4tendl
gams	Add gams recipe (#12700 )	2019-09-04 10:13:58 -05:00
gapbs
gapcloser
gapfiller	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
gasnet	Update legion gasnet config (#12523 )	2019-09-12 13:46:37 -06:00
gatk
gaudi
gaussian
gawk
gblocks
gcc	GCC package: don't set CC etc. based on bin dir if it doesn't exist (#13000 )	2019-10-01 14:29:01 -07:00
gccmakedep
gccxml
gconf
gcta
gdal	GDAL: Add support for MKL driver (#12837 )	2019-09-18 13:47:31 -05:00
gdb
gdbm
gdk-pixbuf
gdl	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
geant4
geant4-data
gearshifft
gemmlowp
genemark-et	Update genemark-et package	2019-09-13 19:05:02 -07:00
genomefinisher
genometools
geopm
geos
gettext
gflags
ghost
ghostscript
ghostscript-fonts
giflib
ginkgo
git
git-fat-git
git-imerge
git-lfs
gl2ps
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
globus-toolkit
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt
gmtsar
gnat
gnome-common	gnome-common: new package (#12359 )	2019-08-09 21:31:47 -05:00
gnu-prolog
gnupg
gnuplot	gnuplot: add 5.2.7 and fix qt dep (#13058 )	2019-10-06 14:28:34 -05:00
gnutls
go	Added go 1.13.1 and 1.12.10 (#12977 )	2019-10-06 20:22:05 -05:00
go-bootstrap
go-md2man	go-md2man: disable module-mode (#12985 )	2019-10-01 19:17:10 -05:00
gobject-introspection	gobject-introspection: add GIR file search path (#12564 )	2019-08-24 09:44:20 -07:00
googletest	googletest: fix darwin install name (#12871 )	2019-09-18 22:46:16 -05:00
gotcha
gource
gperf
gperftools
gpgme	Fix package gpgme dependency (#12410 )	2019-08-13 19:08:50 -05:00
gplates
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap	graphmap: add zlib dependency. (#13031 )	2019-10-03 22:20:13 -05:00
graphviz
grass	Package/grass: fix iconv linking issue (#12165 )	2019-08-12 13:45:05 -07:00
grib-api
grnboost
groff
gromacs	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
grpc	grpc: new package (#13054 )	2019-10-04 18:42:09 -05:00
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus	gtkplus package: add variant for CUPS support (#12566 )	2019-08-30 15:03:44 -07:00
gtksourceview	Fix pkgconfig dependencies (#12714 )	2019-09-09 12:54:46 -05:00
gts
guidance
guile	guile: add versions 2.2.1 through 2.2.6 (#12333 )	2019-08-08 22:22:17 -05:00
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
halc
hapcut2	hapcut2: add zlib dependency. (#13032 )	2019-10-03 22:19:43 -05:00
hapdip
haploview
harfbuzz
harminv
hc
hdf
hdf5	hdf5: patch out mpicxx lib when +mpi~cxx fixes #12586 (#12640 )	2019-08-28 21:49:52 -05:00
hdf5-blosc
heaptrack	heaptrack: added new package at version 1.1.0 (#12844 )	2019-09-24 15:54:23 +02:00
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
hmmer
homer
hoomd-blue
hotspot
hpccg
hpctoolkit	Update target comparison semantic for a few packages (#12947 )	2019-09-26 10:25:12 +02:00
hpcviewer	hpcviewer: add version 2019.08	2019-08-21 16:30:15 -07:00
hpgmg	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hugo
hunspell	bugfix: hunspell: add missing gettext dependency (#12347 )	2019-08-09 10:17:57 -05:00
hwloc
hybpiper
hydra
hydrogen
hyphy
hypre	hypre: add version 2.18.0 (#12992 )	2019-10-01 10:48:40 -05:00
i3
ibm-java	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
ibmisc
iceauth
icedtea
icet
ico
icu4c	icu4c: Add missing python dependency (#12683 )	2019-09-02 09:52:51 -05:00
id3lib
idba	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
iegenlib	Fixed broken iegenlib package (#12229 )	2019-08-09 10:14:17 -05:00
igraph
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
intel-pin
intel-tbb	intel-tbb: fix typo.	2019-09-20 17:53:23 -07:00
intel-xed	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
interproscan	interproscan package: add version 4.8, patch for version 5 (#12897 )	2019-09-25 19:04:57 -07:00
intltool
ioapi
ior
iozone
iperf2
iperf3
ipopt
isaac
isaac-server	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
isl
iso-codes	iso-codes: new package (#12389 )	2019-09-06 12:48:08 -05:00
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
jellyfish
jemalloc	[jemalloc] added version 5.2.1 (#12706 )	2019-09-05 09:39:42 -05:00
jmol
jq
json-c
json-cwx
json-fortran	json-fortran: add new version 7.1.0	2019-08-26 18:47:56 -07:00
json-glib
jsoncpp	jsoncpp: new versions, support cxxstd variant. (#12780 )	2019-09-11 12:32:49 +02:00
jube
judy
julia	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
k8
kahip
kaiju
kaks-calculator
kaldi	Kaldi package: add version 7637de7 and egs (#12911 )	2019-10-01 10:24:03 -07:00
kallisto
karma
kbproto
kdiff3
kealib
kentutils
kibana
kim-api	kim-api: added version 2.1.3 (#12457 )	2019-08-20 16:29:17 +02:00
kitty
kmergenie
kokkos	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
kokkos-kernels	kokkos-kernels: initial commit (#12934 )	2019-09-25 09:00:01 -06:00
kraken
krb5
krims	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
kripke
kvasir-mpl
kvtree
ladot
laghos
lame
lammps	lammps: add version 20190807 (#12424 )	2019-08-14 17:35:24 -05:00
last
lastz
laszip	new package: laszip (#12432 )	2019-08-15 19:07:40 -05:00
latte
launchmon
lazyten	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
lbann	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
lbxproxy
lbzip2
lcals
lcms
ldc
ldc-bootstrap
legion	Update legion gasnet config (#12523 )	2019-09-12 13:46:37 -06:00
lemon
leveldb
lftp
libaec
libaio	libaio: fixed a condition that checks whether we are running on OS X (#12976 )	2019-10-01 15:35:50 -05:00
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
libbson
libcanberra
libcap
libceed	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
libcerf	libcerf:add CFLAGS for fujitsu compiler (#12990 )	2019-10-01 08:54:01 -05:00
libcheck
libcint
libcircle
libconfig	libconfig: add version 1.7.1 (#12324 )	2019-08-10 11:08:53 -05:00
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
libffi
libffs
libfive	Fix pkgconfig dependencies (#12714 )	2019-09-09 12:54:46 -05:00
libflame	libflame: fix macOS build (#12950 )	2019-09-25 18:37:33 -05:00
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libglvnd	new package: libglvnd (#12183 )	2019-08-22 14:08:07 -04:00
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libiberty
libibumad	New package: libibumad (#12886 )	2019-09-27 17:02:34 -07:00
libice
libiconv
libidn2
libint	libint + cp2k: 2-stage build with 'tune' and 'fortran' variants (#12475 )	2019-10-02 21:31:19 +02:00
libjpeg
libjpeg-turbo
libkml	libkml: fix darwin install name (#12872 )	2019-09-18 22:44:57 -05:00
libksba
liblas	new package: liblas (#12619 )	2019-09-04 09:20:38 -05:00
liblbxutil	liblbxutil: Add zlib dependency. (#13033 )	2019-10-03 22:19:22 -05:00
liblockfile
libmad
libmatheval
libmaxminddb
libmesh
libmng
libmo-unpack
libmongoc
libmonitor
libnbc
libnl
libnova
libnrm
libnsl
libogg
liboldx
libpcap
libpciaccess
libpeas	libpeas@1.22.0: new package (#12385 )	2019-09-06 12:53:12 -05:00
libpfm4
libpipeline
libplist
libpmemobj-cpp
libpng
libpsl
libpthread-stubs
libquo
librom
librsvg	Fix pkgconfig dependencies (#12714 )	2019-09-09 12:54:46 -05:00
libseccomp
libsecret	New package: libsecret (#12461 )	2019-08-21 16:20:26 -07:00
libsharp	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
libshm
libsigcpp
libsigsegv
libsm
libsodium
libspatialindex
libspatialite	libspatialite package: add version 3.0.1 and missing dependencies (#12843 )	2019-09-25 18:48:48 -07:00
libsplash
libssh
libssh2
libsvm
libszip
libtasn1
libtermkey
libtiff
libtirpc
libtomlc99
libtool
libunistring	libunistring: add missing dependency on libiconv (#12863 )	2019-09-18 13:37:19 -05:00
libunwind
libusb
libusbmuxd
libuuid
libuv
libvdwxc
libvorbis
libvterm
libwebp	new package: libwebp (#12669 )	2019-08-31 14:10:30 -05:00
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2	libxml2: pass location for libiconv to build system (#12588 )	2019-08-27 09:29:01 -06:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
libyogrt
libzip
liggghts	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
lighttpd
likwid
linkphase3
linux-headers
listres
llvm	llvm: update link to the document explaining codesign (#13047 )	2019-10-04 13:31:43 -07:00
llvm-openmp
llvm-openmp-ompt
lm-sensors
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem	luarocks: Use `make` command instead of `install` (#12703 )	2019-09-07 21:06:52 -05:00
lua-luaposix	luarocks: Use `make` command instead of `install` (#12703 )	2019-09-07 21:06:52 -05:00
lua-mpack
luit
lulesh	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
lumpy-sv
lvm2	libaio: fixed a condition that checks whether we are running on OS X (#12976 )	2019-10-01 15:35:50 -05:00
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
makedepend
maker	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
mallocmc
man-db
manta	updated manta checksum (#13038 )	2019-10-03 18:23:47 -05:00
mapnik	New package: mapnik (#12708 )	2019-10-02 13:50:57 -07:00
mapserver
maq
margo
mariadb	libaio: fixed a condition that checks whether we are running on OS X (#12976 )	2019-10-01 15:35:50 -05:00
mariadb-c-client
masa
masurca	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
mathematica
matio
matlab	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
maven
maverick	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
mawk
mbedtls
mc	mc package: add version 4.8.23 (#12605 )	2019-08-29 13:58:10 -07:00
mcl
mdtest
med
meep
mefit
megadock
megahit	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
memaxes
meme
memkind
memsurfer
meraculous
mercurial	add new mercurial versions (#12997 )	2019-10-01 12:08:28 -05:00
mercury	mercury: Fix CMake 3.15 configure error (#12504 )	2019-08-21 13:28:20 -04:00
mesa	llvm, mesa: update target comparison semantics (#12914 )	2019-09-25 16:41:02 -07:00
mesa-glu
meshkit
meson
mesquite
metabat	metabat: Add zlib and ncurses dependency. (#13034 )	2019-10-03 22:18:55 -05:00
metaphysicl
metis
mfem	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
mgis
microbiomeutil
migrate	migrate: add zlib dependency. (#13039 )	2019-10-04 13:14:09 -05:00
mii
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minizip	Add minizip package (#12835 )	2019-09-18 12:53:01 -05:00
minuit
mira
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg
moab	Fix build for moab 4.9.2 on gcc8 (#12328 )	2019-08-10 11:08:13 -05:00
modern-wheel
mofem-cephas	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
mofem-fracture-module	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
mofem-minimal-surface-equation	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
mofem-users-modules	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
molcas
mongo-cxx-driver
mono
montage
mosh
mothur
motif	Motif package: add jpeg dependency (#12559 )	2019-08-26 18:52:22 -07:00
motioncor2
mount-point-attributes
mozjs
mpark-variant
mpc
mpdecimal
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
multitail
multitime
multiverso
mummer
mumps
munge
muparser
muscle
muse	muse: add zlib dependency. (#13040 )	2019-10-03 22:18:27 -05:00
musl	prefix -> self.prefix (#12487 )	2019-08-20 16:41:41 -05:00
muster
mutationpp
mvapich2	mvapich2 depends on slurm when built with process_managers=slurm (#12489 )	2019-08-20 16:43:28 -05:00
mxml
mxnet
mysql	mysql: Add missing dependencies (#12717 )	2019-10-09 14:45:31 -05:00
nag
nalu
nalu-wind	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
namd	NAMD package: add version 2.13 (#12616 )	2019-08-29 14:00:06 -07:00
nano	Update nano (#12980 )	2019-09-30 16:27:29 -05:00
nanoflann	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn	Install the newest version of ncbi-rmblastn (#12580 )	2019-09-01 11:11:15 -05:00
ncbi-toolkit	ncbi-toolkit: add version 22_0_0 (#12278 )	2019-08-07 14:18:36 -05:00
nccl	NCCL: fix build on older Linux systems (#12415 )	2019-08-14 12:34:00 -05:00
nccmp
ncdu
ncftp
ncl	ESMF & NCL packages: Bug fixes for Intel Compilers (#11923 )	2019-08-23 17:16:09 -07:00
nco
ncurses	ncurses: improve build time (#12621 )	2019-09-07 22:27:07 -05:00
ncview
ndiff
nek5000
nekbone
nekcem
nektar
nektools
neovim	Revert "update neovim (#12965 )" (#12978 )	2019-09-30 13:18:27 -05:00
nest
netcdf
netcdf-cxx
netcdf-cxx4	netcdf-cxx4: add m4 dep for call to autoreconf (#12325 )	2019-08-08 22:29:42 -05:00
netcdf-fortran
netgauge
netgen
netlib-lapack	Apply xl patch for cce@9: to fix cmake. (#12392 )	2019-08-12 14:41:00 -05:00
netlib-scalapack
netlib-xblas
nettle
neuron
nextflow	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
nfft
nghttp2
nginx
ngmlr	ngmlr: add zlib dependency. (#13041 )	2019-10-03 22:18:12 -05:00
nim
ninja
ninja-fortran
nix
nlohmann-json	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
nlopt
nmap
nnvm
node-js
notmuch
npb
npm
npth
nrm
nseg
nspr
ntpoly
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-catalyst
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2	patch opa-psm2 to build with spack wrappers (#12407 )	2019-08-13 19:13:21 -05:00
opam
opari2	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303 )	2019-08-08 22:44:33 -05:00
openbabel
openblas	openblas: fixed a query to target family (#12910 )	2019-09-25 22:15:23 +02:00
opencoarrays
opencv
openexr
openfast
openfdtd	New package: openfdtd (#12498 )	2019-08-27 16:32:18 -07:00
openfoam	Build older openfoam (#13071 )	2019-10-08 20:42:44 -05:00
openfoam-org
openfst
opengl
openglu
openimageio
openjdk	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
openjpeg
openkim-models
openldap	new package: openldap (#12748 )	2019-10-02 11:58:46 -05:00
openmc
openmpi
openmx	openmx: new package (#12768 )	2019-09-10 12:59:13 -05:00
opennurbs
openpa
openpmd-api	openPMD-api package: require newer nlohmann-json (#12546 )	2019-08-23 17:26:54 -07:00
openscenegraph	OpenSceneGraph package: add version 3.6.4; update URL and checksums (#12626 )	2019-08-29 15:38:49 -07:00
openslide
openspeedshop	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
openspeedshop-utils	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
openssh
openssl	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
openstf	openstf: new package (#12538 )	2019-08-23 10:40:09 -05:00
opium
optional-lite
optipng	new package: optipng (#12608 )	2019-08-31 14:41:06 -05:00
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osu-micro-benchmarks
otf
otf2	otf2: add configure args to specify compiler commands. (#12711 )	2019-09-30 08:18:09 -05:00
p4est	fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784 )	2019-09-10 19:39:42 -05:00
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
paml
panda
pandaseq
pandoc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
pango
pangomm
papi
papyrus
paradiseo
parallel
parallel-netcdf	parallel-netcdf package: add version 1.11.2 (#12502 )	2019-08-23 15:03:25 -07:00
paraver
paraview	Add cuda to paraview build. (#12996 )	2019-10-02 12:00:03 -05:00
parmetis
parmgridgen
parquet
parsimonator	parsimonator: simplified recipe by removing SIMD variants (#12949 )	2019-09-26 09:33:18 +02:00
parsplice
partitionfinder
pasta
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre
pcre2	qt: help pick up dependencies (#11172 )	2019-10-05 21:13:38 -05:00
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept	Percept package: add version (#12434 )	2019-08-21 18:00:41 -07:00
perl
perl-acme-damn	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-algorithm-diff
perl-alien-build	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-alien-libxml2	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-pg	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-devel-symdump	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-error	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-ffi-checklib	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-file-chdir	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-forks	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon	Add missing dependencies to perl-http-daemon (#12898 )	2019-09-24 12:44:28 +02:00
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-all	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-io-compress
perl-io-html
perl-io-prompt	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-io-stringy	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-io-tty	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-ipc-run	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-json
perl-libwww-perl	Added depencies to perl-libwww-perl (#12899 )	2019-09-24 12:45:02 +02:00
perl-libxml-perl	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-list-moreutils	Added missing dependencies for perl-list-moreutils (#12900 )	2019-09-24 12:45:39 +02:00
perl-list-moreutils-xs	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-log-log4perl
perl-logger-simple
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-mailtools	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-path-tiny	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perl-unsafe-signals	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-perlio-gzip	perl-perlio-gzip: add zlib dependency. (#13060 )	2019-10-08 20:51:39 -05:00
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intspan
perl-set-scalar	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-soap-lite
perl-star-fusion	The perl-uri-escape package duplicates perl-uri (#12971 )	2019-09-29 09:27:42 -05:00
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-sys-sigaction	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-task-weaken
perl-term-readkey	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-timedate	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-try-tiny
perl-uri	The perl-uri-escape package duplicates perl-uri (#12971 )	2019-09-29 09:27:42 -05:00
perl-version
perl-want
perl-www-robotrules
perl-xml-dom	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-dom-xpath	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-filter-buffertext	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-libxml	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-namespacesupport	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-parser	Add missing dependency to perl-xml-parser (#12903 )	2019-09-24 12:51:55 +02:00
perl-xml-parser-lite
perl-xml-quote	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-regexp	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-sax	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-sax-base	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-sax-writer	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-simple
perl-xml-twig	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-writer	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-xml-xpathengine	New package: maker and dependencies (#12904 )	2019-09-27 14:59:58 -07:00
perl-yaml
perl-yaml-libyaml
petsc	petsc, slepc: add new versions - 3.12.0 (#12979 )	2019-09-30 13:18:11 -05:00
pexsi
pfft
pflotran
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist
phrap-crossmatch-swat
phred
phylip
phyluce
picard	picard: add 2.20.8	2019-10-01 18:19:37 -07:00
picsar	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
picsarlite	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
pidx
pigz
pilon
pindel
piranha
pism
pixman
pixz	Add pixz package (#12698 )	2019-09-05 09:40:29 -05:00
pkg-config
pkgconf
pktools	new package: pktools (#12611 )	2019-08-31 14:39:51 -05:00
planck-likelihood	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
plasma	Add patches to work around CMake versions (#12744 )	2019-09-07 19:04:20 -05:00
platypus
plink	New Plink beta version (#12352 )	2019-08-09 10:22:18 -05:00
plplot
plumed
pmdk	pmdk: added v 1.7 (#13067 )	2019-10-08 09:19:27 +02:00
pmgr-collective
pmix
pmlib	pmlib: new package (#12625 )	2019-09-03 09:26:47 -05:00
pnfft
pngquant	new package: pngquant (#12609 )	2019-08-31 14:40:26 -05:00
pngwriter
pnmpi
poamsa
pocl
polymake
poppler	New package: TexStudio (#12301 )	2019-08-12 14:48:28 -05:00
poppler-data
popt	create package popt (#12783 )	2019-09-10 21:33:33 -05:00
porta
portage	portage: fix RelWithDebInfo build (#12944 )	2019-09-25 11:29:43 -06:00
portcullis	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
postgresql
powerapi
ppl
pplacer
prank
precice	preCICE: added versions 1.6.0 and 1.6.1 (#12809 )	2019-09-13 16:04:50 +02:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
procps	procps: new package (#13043 )	2019-10-05 11:39:55 +02:00
prodigal
proj
protobuf
protobuf-c	new package: protobuf-c (#12634 )	2019-09-03 16:16:50 -05:00
proxymngr
prrte
pruners-ninja
ps-lite
psi4
pslib
psm
psmc	psmc: add zlib dependency. (#13061 )	2019-10-08 20:51:04 -05:00
pstreams
pugixml
pumi	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py
py-adios	py-adios package: restrict python dependency to <=3.6.x (#12932 )	2019-09-27 17:19:36 -07:00
py-advancedhtmlparser
py-aenum
py-affine
py-alabaster
py-alembic
py-altgraph	Update buildcache creation and installation to allow mach-o binary relocation using py-machotools on linux or macos. (#12858 )	2019-09-18 07:24:45 -05:00
py-antlr4-python3-runtime
py-apache-libcloud
py-apipkg	py-apipkg: Fix mix up of checksums (#13066 )	2019-10-07 20:55:22 -05:00
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-asdf	Add py-asdf package (#12817 )	2019-09-16 13:07:48 -05:00
py-ase	py-ase: New version 3.18 (#12697 )	2019-09-05 09:09:37 -05:00
py-asn1crypto
py-astor
py-astroid
py-astropy	Add py-astropy 2.0.14 (#12816 )	2019-09-16 13:09:30 -05:00
py-astunparse
py-async-generator
py-atomicwrites
py-atropos	py-atropos: new package (#12745 )	2019-09-10 12:18:31 -05:00
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-backports-tempfile
py-backports-weakref
py-basemap
py-bcbio-gff
py-beautifulsoup4	Add py-beautifulsoup4 4.8.0 (#12815 )	2019-09-16 13:08:36 -05:00
py-bintrees	Add py-bintrees package (#12818 )	2019-09-16 13:07:21 -05:00
py-binwalk
py-biom-format
py-biomine
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach	py-bleach package: add version 3.1.0 (#12814 )	2019-09-13 19:15:54 -07:00
py-blessed
py-blessings
py-blinker	new package: py-blinker (#12531 )	2019-08-23 11:03:16 -05:00
py-bokeh	Update py-bokeh: new version & dependencies" (#12724 )	2019-09-09 11:59:27 -05:00
py-boltons
py-boto3
py-botocore
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-bsddb3
py-bx-python
py-bz2file	new package: py-bz2file (#12761 )	2019-09-08 10:38:37 -05:00
py-cachetools
py-cairocffi
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi	Add py-certifi 2019.6.16 (#12339 )	2019-08-08 21:57:01 -05:00
py-certipy	Added py-certipy package. Dependency of py-jupyterhub. (#13068 )	2019-10-08 20:48:11 -05:00
py-cf-units
py-cffi
py-cftime
py-chardet	py-chardet package: add py-pytest-runner dependency (#12692 )	2019-09-03 14:56:53 -07:00
py-checkm-genome
py-cheetah
py-click
py-click-plugins
py-cligj
py-clipboard	Add py-clipboard package (#12364 )	2019-08-10 11:52:52 -05:00
py-cloudpickle	py-cloudpickle package: add version 1.2.1 (#12518 )	2019-08-22 16:56:47 -07:00
py-cogent
py-colorama
py-colorlog
py-colormath
py-colorpy
py-configobj	Package/py configobj (#12639 )	2019-09-08 17:08:59 -05:00
py-configparser
py-contextlib2	Add missing py-contextlib2 (#13056 )	2019-10-06 09:15:29 -05:00
py-counter
py-cov-core	New package: py-cov-core (#12526 )	2019-08-23 17:21:08 -07:00
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt	py-cutadapt: Updated version checksum (#12741 )	2019-09-08 10:46:08 -05:00
py-cvxopt	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
py-cycler
py-cython	py-cython package: fix --test (#12813 )	2019-09-13 19:15:06 -07:00
py-dask
py-dbf
py-decorator
py-deeptools	py-deeptools: add 3.3.0 (#12456 )	2019-08-21 16:43:44 -07:00
py-deeptoolsintervals	py-deeptools: add 3.3.0 (#12456 )	2019-08-21 16:43:44 -07:00
py-dendropy
py-descartes
py-dill
py-discover
py-dlcpar
py-dnaio	py-dnaio: new package need by py-cutadapt (#12743 )	2019-09-08 10:37:49 -05:00
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-earthengine-api
py-easybuild-easyblocks	Add EasyBuild 4.0.0 (#13024 )	2019-10-03 16:48:42 +02:00
py-easybuild-easyconfigs	Add EasyBuild 4.0.0 (#13024 )	2019-10-03 16:48:42 +02:00
py-easybuild-framework	Add EasyBuild 4.0.0 (#13024 )	2019-10-03 16:48:42 +02:00
py-ecdsa	New package: py-ecdsa (#12598 )	2019-08-29 13:57:36 -07:00
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee	py-emcee package: add version 2.2.1 (#12812 )	2019-09-13 19:13:45 -07:00
py-empy	new package: py-empy	2019-08-21 17:07:08 -07:00
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-exodus	new package: py-exodus (#12291 )	2019-08-06 23:11:56 -05:00
py-fallocate	New package: py-fallocate (#12450 )	2019-08-21 16:51:25 -07:00
py-fastaindex
py-fastcache	New package: py-fastcache (#12451 )	2019-08-23 15:54:50 -07:00
py-fasteners
py-faststructure
py-filelock
py-filemagic	New package: py-filemagic (#12452 )	2019-08-23 15:53:09 -07:00
py-fiona
py-fiscalyear
py-flake8
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye	Add py-flye 2.6 (#13025 )	2019-10-03 10:32:00 -05:00
py-fn
py-fortranformat	New package: py-fortranformat (#12459 )	2019-08-21 16:24:34 -07:00
py-fparser
py-freezegun
py-fsspec	New package: py-fsspec (#12725 )	2019-09-09 11:58:49 -05:00
py-funcsigs
py-functools32
py-future	add new versions (#12393 )	2019-08-13 19:35:02 -05:00
py-futures
py-fypp
py-gast	New package: py-gast (#12874 )	2019-09-20 17:59:50 -07:00
py-gdbgui
py-gdc-client	A new package: py-gdc-client. (#12672 )	2019-08-31 14:08:05 -05:00
py-gee-asset-manager	Add py-gee-asset-manager package (#12365 )	2019-08-10 11:52:38 -05:00
py-geeadd	Add py-geeadd package (#12366 )	2019-08-10 11:52:24 -05:00
py-geeup	Add py-geeup package (#12367 )	2019-08-10 11:52:10 -05:00
py-genders
py-genshi
py-geoalchemy2	new package: py-geoalchemy2	2019-08-21 16:22:34 -07:00
py-geopandas
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-google-api-core	Add py-google-api-core package (#12368 )	2019-08-10 11:51:56 -05:00
py-google-api-python-client
py-google-auth
py-google-auth-httplib2
py-google-cloud-core	Add py-google-cloud-core package (#12369 )	2019-08-10 11:51:41 -05:00
py-google-cloud-storage	Add py-google-cloud-storage package (#12370 )	2019-08-10 11:51:27 -05:00
py-google-resumable-media	Add py-google-resumable-media package (#12371 )	2019-08-10 11:51:12 -05:00
py-googleapis-common-protos	Add py-googleapis-common-protos package (#12372 )	2019-08-10 11:50:58 -05:00
py-gpaw	py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795 )	2019-09-12 09:36:45 -05:00
py-graphviz
py-greenlet
py-grequests	new package: py-grequests	2019-08-21 17:50:17 -07:00
py-griddataformats
py-guidata
py-guiqwt
py-h5glance
py-h5py
py-hdfs
py-hepdata-validator
py-hpccm
py-html2text
py-html5lib	Relax Python version constraints on py-html5lib (#12811 )	2019-09-16 12:56:21 -05:00
py-htseq
py-httpbin
py-httplib2
py-humanize	new package: py-humanize	2019-08-21 16:10:51 -07:00
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio	py-imageio package: add versions 2.4.1 and 2.5.0 (#12884 )	2019-09-25 18:44:57 -07:00
py-imagesize
py-iminuit
py-importlib
py-importlib-metadata	Add py-importlib-metadata package (#12657 )	2019-08-30 12:43:55 -05:00
py-iniparse	new package: py-iniparse (#12638 )	2019-09-08 17:09:24 -05:00
py-invoke
py-ipaddress
py-ipdb
py-ipykernel	fix ipykernel dependency, newer versions are python3-only (#13019 )	2019-10-03 22:17:16 -05:00
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-jmespath
py-joblib
py-jplephem	Add py-jplephem package (#12819 )	2019-09-16 13:06:33 -05:00
py-jprops
py-jpype
py-jsonpatch
py-jsonpointer
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook	update py-jupyter-notebook to use the real releases (#13020 )	2019-10-02 11:39:55 -05:00
py-jupyterhub
py-keras
py-keras-applications	add new version (#12394 )	2019-08-13 19:34:34 -05:00
py-keras-preprocessing	add new version (#12395 )	2019-08-13 19:33:12 -05:00
py-kitchen	New package: py-kitchen (#12464 )	2019-08-23 15:24:10 -07:00
py-kiwisolver
py-kmodes
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble	libensemble package: add version 0.5.2 (#12514 )	2019-08-27 16:39:43 -07:00
py-ligo-segments	Add py-ligo-segments package (#12820 )	2019-09-16 13:06:09 -05:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-lscsoft-glue	Add py-lscsoft-glue package (#12821 )	2019-09-16 13:06:59 -05:00
py-luigi
py-lxml
py-lzstring
py-m2r
py-macholib	Update buildcache creation and installation to allow mach-o binary relocation using py-machotools on linux or macos. (#12858 )	2019-09-18 07:24:45 -05:00
py-machotools
py-macs2
py-maestrowf	Add new versions of py-maestrowf (#13081 )	2019-10-09 22:23:19 -05:00
py-mako
py-markdown
py-markupsafe
py-matplotlib	Fix py-matplotlib build with Intel compiler (#12144 )	2019-08-11 12:57:31 -05:00
py-mccabe
py-mdanalysis	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
py-mechanize	new package: py-mechanize (#12468 )	2019-08-21 16:17:51 -07:00
py-meep
py-memory-profiler
py-merlin
py-metasv
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mlxtend
py-mo-pack
py-mock
py-modred
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py
py-mpld3	Add py-mpld3 package (#12822 )	2019-09-16 13:08:17 -05:00
py-mpmath
py-multi-key-dict	New package: py-multi-key-dict (#12508 )	2019-08-22 16:55:11 -07:00
py-multiprocess
py-multiqc
py-munch
py-mx
py-mxnet
py-myhdl
py-mysql-connector
py-mysqlclient	New package: py-mysqlclient (#12594 )	2019-08-29 13:49:50 -07:00
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-nc-time-axis
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nose2	New package: py-nose2 (#12522 )	2019-08-27 18:18:14 -07:00
py-nosexcover
py-numba
py-numexpr	py-numexpr: switch from PyPI to GitHub download (#12360 )	2019-08-09 22:27:34 -05:00
py-numexpr3
py-numpy	Add py-numpy 1.17.2 (#12753 )	2019-09-07 20:44:46 -05:00
py-numpydoc
py-oauth2client	Add py-oauth2client package (#12373 )	2019-08-10 11:50:43 -05:00
py-oauthlib	New package: py-oauthlib (#12528 )	2019-08-30 10:57:59 -07:00
py-olefile
py-onnx
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-opppy	New package: py-opppy (#12483 )	2019-08-23 15:22:31 -07:00
py-ordereddict
py-oset
py-overpy	New package: py-overpy (#12533 )	2019-08-26 15:44:57 -07:00
py-owslib
py-packaging	Add py-packaging 19.1 (#12659 )	2019-08-30 12:44:59 -05:00
py-palettable
py-pamela	Added py-pamela package. Dependency of py-jupyterhub. (#13075 )	2019-10-08 20:08:32 -05:00
py-pandas
py-paramiko
py-partd
py-path-py	new package: py-path-py (#12534 )	2019-08-23 10:49:14 -05:00
py-pathlib	Add py-pathlib package (#12374 )	2019-08-10 11:50:24 -05:00
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pauvre
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow
py-pint
py-pip
py-pipits
py-pispino
py-pkgconfig
py-planar	New package: py-planar (#12589 )	2019-08-28 18:25:49 -07:00
py-plotly
py-pluggy	Add py-pluggy 0.12.0 (#12658 )	2019-08-30 12:44:15 -05:00
py-ply
py-pmw
py-poster	Port py-poster to Python 3 (#12363 )	2019-08-10 11:53:15 -05:00
py-pox
py-ppft
py-prettytable
py-progress
py-progressbar2
py-projectq
py-prometheus-client	Fixed hash of version .0.5 and added latest version (.0.7.1) (#13077 )	2019-10-08 20:43:44 -05:00
py-prompt-toolkit
py-protobuf	py-protobuf package: fix import error for Python 2.x (#12873 )	2019-09-20 17:52:11 -07:00
py-psutil
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow
py-pyasn1
py-pyasn1-modules
py-pybedtools
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
py-pycbc	Add py-pycbc package (#12823 )	2019-09-16 13:10:02 -05:00
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycuda	New package: py-pycuda (#12592 )	2019-08-28 18:36:25 -07:00
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pydot2	New package: py-pydot2 (#12535 )	2019-08-23 17:49:44 -07:00
py-pydotplus	New package: py-pydotplus (#12537 )	2019-08-29 10:33:03 -07:00
py-pydv
py-pyelftools
py-pyepsg
py-pyfaidx	py-pyfaidx: tweak dependencies; fixes #12445 (#12446 )	2019-08-16 22:41:32 -05:00
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdal	add a version (#12856 )	2019-09-17 22:54:18 -05:00
py-pygdbmi
py-pyglet	new package: py-pyglet	2019-08-28 18:32:51 -07:00
py-pygments
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pyjwt	New package: py-pyjwt (#12532 )	2019-08-26 15:45:56 -07:00
py-pyke
py-pykml	New package: py-pykml (#12539 )	2019-08-23 17:27:36 -07:00
py-pykwalify	New package: py-pykwalify (#12540 )	2019-09-13 12:22:08 -07:00
py-pyliblzma	New package: py-liblzma (#12549 )	2019-08-27 17:29:10 -07:00
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pymorph	New package: py-morph (#12550 )	2019-08-23 18:08:26 -07:00
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
py-pyomo
py-pyopenssl	Add py-pyopenssl package (#12824 )	2019-09-16 13:05:37 -05:00
py-pypar
py-pyparsing
py-pypeflow
py-pyperclip	Add py-pyperclip package (#12375 )	2019-08-10 11:50:10 -05:00
py-pyprof2html
py-pyproj
py-pyqi
py-pyqt4	Fix PyQt installation (#12479 )	2019-09-08 10:48:50 -05:00
py-pyqt5	Fix PyQt installation (#12479 )	2019-09-08 10:48:50 -05:00
py-pyrad
py-pyrosar
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysmartdl	Add py-pysmartdl package (#12376 )	2019-08-10 11:49:55 -05:00
py-pysocks
py-pyspark
py-pysqlite
py-pytailf	new package: py-pytailf (#12542 )	2019-08-23 10:32:50 -05:00
py-pytest	Add py-pytest 5.1.1 (#12660 )	2019-08-30 12:45:18 -05:00
py-pytest-cache	New package: py-pytest-cache (#12552 )	2019-08-29 10:49:56 -07:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-isort
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-jenkins	new package: py-python-jenkins	2019-08-29 13:56:10 -07:00
py-python-ldap	new package: py-python-ldap (#12599 )	2019-10-01 20:59:53 -05:00
py-python-levenshtein
py-python-magic	add new package: py-python-magic (#12409 )	2019-08-14 10:37:06 -05:00
py-python-mapnik	New package: py-python-mapnik (#12786 )	2019-10-01 18:37:34 -07:00
py-python-socketio
py-python-utils
py-pythonqwt
py-pytools	New package: py-pytools (#12553 )	2019-08-26 19:00:06 -07:00
py-pytz
py-pyudev	fix typo in version number (#12855 )	2019-09-17 20:28:57 -05:00
py-pyugrid
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-queryablelist
py-radical-utils
py-ranger
py-rasterio
py-ratelim	new package: py-ratelim	2019-08-26 18:53:49 -07:00
py-readme-renderer
py-regex
py-reportlab
py-repoze-lru	new package: py-repoze-lru	2019-08-29 10:59:05 -07:00
py-requests
py-requests-futures
py-requests-oauthlib	new package: py-requests-oauthlib (#12548 )	2019-08-31 15:13:04 -05:00
py-requests-toolbelt
py-restview
py-retrying	Add py-retrying package (#12377 )	2019-08-10 11:49:41 -05:00
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-ruamel-yaml	New package: py-ruamel-yaml (#12543 )	2019-09-12 15:46:39 -07:00
py-s3transfer
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scikit-optimize	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
py-scipy	Add py-scipy 1.3.1 (#12620 )	2019-08-28 10:32:23 -05:00
py-scoop
py-scp	new package: py-scp	2019-08-26 18:54:32 -07:00
py-seaborn
py-selenium	Add py-selenium package (#12378 )	2019-08-10 11:49:25 -05:00
py-semantic-version	Add py-semantic-version package (#12825 )	2019-09-16 13:05:12 -05:00
py-send2trash
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sgp4	New package: py-sgp4 (#12557 )	2019-08-26 18:51:33 -07:00
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-simplekml	new package: py-simplekml (#12541 )	2019-08-23 10:33:54 -05:00
py-singledispatch
py-sip	Fix PyQt installation (#12479 )	2019-09-08 10:48:50 -05:00
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-sortedcontainers	Add py-sortedcontainers package (#12826 )	2019-09-16 13:04:50 -05:00
py-soupsieve	Add py-soupsieve package (#12827 )	2019-09-16 12:56:53 -05:00
py-spatialist
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxautomodapi
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-stratify
py-subprocess32
py-symengine
py-symfit
py-sympy
py-systemd-python	new package: py-systemd-python (#12595 )	2019-08-31 14:57:03 -05:00
py-tables	Re-add py-cython dependency to py-tables (#12338 )	2019-08-08 21:57:16 -05:00
py-tabulate
py-tappy
py-tblib
py-termcolor	new package: py-termcolor (#12544 )	2019-08-23 10:31:49 -05:00
py-terminado
py-testinfra
py-tetoolkit
py-texttable
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-torch	Overhaul PyTorch package (#12420 )	2019-08-15 17:54:09 -05:00
py-torchvision
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-tuiview
py-twisted
py-typesentry
py-typing
py-typing-extensions
py-tzlocal
py-udunits
py-umi-tools
py-unicycler
py-unittest2
py-unittest2py3k
py-uritemplate
py-urllib3
py-urwid
py-usgs
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-wand	New package: py-wand (#12590 )	2019-08-28 18:32:08 -07:00
py-warlock
py-wcsaxes
py-wcwidth
py-weave	Add py-weave package (#12828 )	2019-09-16 12:57:18 -05:00
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
py-widgetsnbextension
py-wrapt
py-wxpython
py-xarray
py-xattr
py-xdot
py-xenv
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen	py-xopen: update release 0.8.2 checksum (#12742 )	2019-09-08 10:38:19 -05:00
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
py-zipp	Add py-zipp package (#12656 )	2019-08-30 12:43:37 -05:00
py-zmq
py-zope-event
py-zope-interface
pythia6	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
python
qbank
qbox
qca	QCA package: add version 2.2.1 and update CMake args (#12576 )	2019-08-29 11:47:46 -07:00
qhull
qjson	qjson package: enable building with qt4 (#12577 )	2019-08-29 11:56:08 -07:00
qmcpack	QMCPACK Oct2019 fix buglets (#13069 )	2019-10-08 20:46:15 -05:00
qmd-progress
qorts
qrupdate
qt	qt: Add 5.13.1 and missing zlib flags (#13109 )	2019-10-09 22:22:52 -05:00
qt-creator
qtgraph
qthreads
qtkeychain	qtkeychain package: enable building with qt4 (#12578 )	2019-08-29 11:55:11 -07:00
quantum-espresso	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
quinoa
qwt	Update VisIt to version 3.0.1 and fix on mac (#12396 )	2019-08-15 10:13:45 -05:00
qwtpolar	new package: qwtpolar (#12382 )	2019-08-11 12:39:58 -05:00
r	r: added version 3.6.1. (#12470 )	2019-08-20 11:13:18 +02:00
r3d
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-absseq
r-acde
r-acepack	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-acgh
r-acme
r-ada	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-adabag	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ade4	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-adegenet	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-adsplit
r-aer	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-alsace
r-altcdfenvs
r-amap	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-argparse	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-askpass	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-assertthat	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-backports	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bamsignals
r-base64	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-base64enc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bayesm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bbmisc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-beanplot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bfast	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bfastspatial
r-bglr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bh	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-biasedurn	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bibtex	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bindr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bindrcpp	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bit64	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bitops	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-blob	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-blockmodeling	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bookdown	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-boot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-brew	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-broom	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-bsgenome
r-bumphunter
r-c50	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cairo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-callr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-car	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cardata	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-caret	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-caroline	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-category
r-catools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cdcfluview	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cellranger	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-checkmate	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-checkpoint	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-chemometrics	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-chron	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-circlize	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-class	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-classint	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cli	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-clipr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-clisymbols	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cluster	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-clustergeneration	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-clusterprofiler
r-cner	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-coda	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-codetools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-coin	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-colorspace	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-combinat	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-commonmark	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-complexheatmap
r-compositions	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-construct	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-convevol	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-corhmm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-corpcor	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-corrplot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-covr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cowplot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-crayon	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-crosstalk	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-crul	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ctc
r-cubature	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-cubist	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-curl	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-data-table	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dbi	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dbplyr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-debugme	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-delayedarray
r-deldir	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dendextend	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-deoptim	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-deoptimr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-desc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-deseq
r-deseq2
r-desolve	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-devtools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-diagrammer	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dicekriging	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dichromat	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-diffusionmap	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-digest	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-diptest	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dirichletmultinomial
r-dismo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-diversitree	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dnacopy
r-do-db
r-domc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-doparallel	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dorng	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dose
r-dosnow	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-downloader	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dplyr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dqrng	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dt	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dtw	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dygraphs	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-dynamictreecut	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-e1071	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-edger
r-ellipse	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ellipsis	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-emmli	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-energy	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ensembldb
r-ergm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-evaluate	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-expint	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-expm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-factoextra	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-factominer	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fansi	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fastcluster	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fastmatch	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ff	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fftwtools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fgsea
r-filehash	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-findpython	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fit-models	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fitdistrplus	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-flashclust	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-flexclust	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-flexmix	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fnn	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-forcats	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-foreach	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-forecast	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-foreign	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-formatr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-formula	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fpc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fracdiff	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-fs	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-futile-logger	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-futile-options	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-future	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-future-apply	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gamlss	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gamlss-data	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gamlss-dist	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gbm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gbrd	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gcrma
r-gdalutils	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gdata	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-gdsfmt
r-geiger	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
r-genefilter
r-genelendatabase
r-geneplotter
r-generics	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-geomorph	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-ggbio
r-ggdendro	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-glimma
r-glmnet	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-googlevis	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-goseq
r-gostats
r-gower	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-graph
r-grbase	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-gseabase
r-gss	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-gtrellis
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r-gwmodel	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-haven	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-hoardr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-htmltable	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-hypergraph
r-ica	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-igraph	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-illuminaio
r-impute
r-influencer	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ini	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-interactivedisplaybase
r-intervals	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-irkernel
r-irlba	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-jaspar2018
r-jomo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-jsonlite	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-kernsmooth	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-knitr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ks	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-labeling	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-laplacesdemon	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lars	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-later	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lattice	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-latticeextra	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lava	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-leaflet	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-leaps	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-leiden	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-libcoin	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-limma
r-listenv	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lme4	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lmtest	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-locfit	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-log4r	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-loo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lpsolve	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lsei	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-lubridate	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-magic	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-magick	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-magrittr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-makecdfenv
r-maldiquant	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-manipulatewidget	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mapproj	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-maps	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-maptools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-markdown	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mass	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-matr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-matrix	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-matrixmodels	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-matrixstats	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mclust	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mcmcglmm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mco	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mda	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-memoise	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mergemaid
r-metap	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mgcv	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mgraster	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mice	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mime	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-minfi
r-miniui	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-minqa	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-misc3d	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mitml	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mitools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mixtools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mlbench	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mlinterfaces
r-mlr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mlrmbo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mmwrweek	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mnormt	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-modelmetrics	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-modelr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-modeltools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mpm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-msnbase
r-multcomp	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-multicool	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-multitaper	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-multtest
r-munsell	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mvtnorm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-mzid
r-mzr
r-nanotime	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ncbit	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ncdf4	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-network	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-networkd3	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nleqslv	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nlme	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nloptr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nmf	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nmof	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nnet	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nnls	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nor1mix	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-nortest	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-np	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-npsurv	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-numderiv	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-oligoclasses
r-openssl	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-openxlsx	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-optparse	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ordinal	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-org-hs-eg-db
r-organismdbi
r-packrat	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pacman	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-paleotree	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pamr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pan	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-parallelmap	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-paramhelpers	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-party	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-partykit	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pathview
r-pbapply	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pbdzmq	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pbkrtest	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pcamethods
r-pcapp	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-permute	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pfam-db
r-phangorn	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-phantompeakqualtools
r-phyloseq
r-phylostratr
r-phytools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-picante	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pillar	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pkgbuild	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pkgconfig	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pkgload	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pkgmaker	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-plogr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-plot3d	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-plotly	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-plotrix	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pls	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-plyr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pmcmr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-png	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-polynom	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-popgenome	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-popvar	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-preprocesscore
r-prettyunits	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-processx	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-progress	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-promises	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-protgenerics
r-proto	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-proxy	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-pryr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ps	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-psych	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ptw	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-qtl	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-quadprog	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-quantmod	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-quantreg	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-quantro
r-qvalue
r-r6	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-r-methodss3	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-r-oo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-r-utils	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-randomfields	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-randomfieldsutils	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-randomforest	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-randomglm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ranger	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rann	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rappdirs	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-raster	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rbgl
r-rbokeh	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rcmdcheck	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-rcpp	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rcppannoy	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-rcppblaze	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rcppcctz	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
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r-rcppeigen	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rcppparallel	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rcppprogress	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rcurl	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rda	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rdpack	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-readr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-readxl	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-recipes	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-registry	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rematch	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-remotes	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-reordercluster	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-reportingtools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-repr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-reprex	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-reshape	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-reshape2	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-reticulate	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rex	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rgdal	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rgenoud	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rgeos	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rgexf	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rgl	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rgooglemaps	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rgraphviz
r-rhdf5
r-rhmmer	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rhtslib
r-rinside	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rio	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rjags	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rjava	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rjson	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rjsonio	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rlang	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rmarkdown	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rminer	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rmpfr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rmpi	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rmutil	r-rmutil: new package at 1.1.3 (#12417 )	2019-08-14 14:53:57 -05:00
r-rmysql	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rngtools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rnoaa	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-robust	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-robustbase	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rocr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rodbc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rook	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rots
r-roxygen2	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rpart	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rpart-plot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rpostgresql	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rprojroot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rrblup	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rrcov	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rrpp	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rsamtools
r-rsnns	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rsolnp	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rspectra	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rsqlite	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rstan	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rstantools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rstudioapi	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rsvd	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rtracklayer
r-rtsne	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-runit	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rvcheck	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rvest	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-rzmq	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-s4vectors
r-samr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sandwich	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-scales	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-scatterplot3d	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sctransform	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sdmtools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-segmented	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-selectr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-seqinr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-seqlogo
r-sessioninfo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-seurat	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sf	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sfsmisc	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-shape	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-shiny	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-shinydashboard	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-shinyfiles	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-shortread
r-siggenes
r-simpleaffy
r-sitmo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-smoof	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sn	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-snakecase	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-snow	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-snowfall	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-snprelate
r-som	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-somaticsignatures
r-sourcetools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sp	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-spacetime	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sparsem	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-spatial	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-spatialreg	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-spdata	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-spdep	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-speedglm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-spem
r-splancs	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-splitstackshape	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sqldf	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-squarem	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-squash	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sseq
r-stanheaders	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-statmod	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-statnet-common	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-stringi	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-stringr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-strucchange	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-subplex	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-summarizedexperiment
r-survey	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-survival	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-sva
r-sys	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tarifx	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-taxizedb	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tclust	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tensora	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-testit	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-testthat	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tfbstools
r-tfmpvalue	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-th-data	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-threejs	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tibble	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tidycensus	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tidyr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tidyselect	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tidyverse	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tiff	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tigris	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-timedate	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tinytex	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tmixclust
r-topgo
r-triebeard	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-trimcluster	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-truncnorm	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-trust	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tseries	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-tsne	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ttr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-ucminf	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-udunits2	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-units	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-urca	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-urltools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-usethis	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-utf8	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-uuid	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-uwot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-variantannotation
r-varselrf	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-vcd	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-vctrs	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-vegan	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-vfs	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-vgam	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-vipor	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-viridis	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-viridislite	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-visnetwork	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-vsn
r-webshot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-wgcna	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-whisker	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-withr	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xde
r-xfun	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xgboost	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xlconnect	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xlconnectjars	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xlsx	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xlsxjars	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xmapbridge
r-xml	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xml2	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xnomial	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xopen	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xtable	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xts	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-xvector
r-yaml	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-yapsa
r-yaqcaffy
r-yarn
r-zeallot	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-zip	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
r-zlibbioc
r-zoo	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
racon
raft
ragel
raja	raja~openmp: explicitly disable OpenMP in CMake (#12572 )	2019-08-27 14:00:40 +02:00
randfold
random123
randrproto
range-v3
rankstr
rapidjson	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
ravel
raxml	raxml: simplified recipe by removing SIMD variants (#12952 )	2019-09-28 13:45:01 -05:00
ray
rclone
rdma-core
rdp-classifier
rdptools
re2c	re2c package: add version 1.2.1 (#12455 )	2019-08-21 16:45:19 -07:00
readfq
readline
recon
recordproto
redis
redset
redundans
regcm	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
relax
relion
rempi
rename
rendercheck
renderproto
repeatmasker
repeatmodeler
repeatscout
resourceproto
revbayes
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
rockstar
rodinia
root	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
rose
ross	Update target comparison semantic for a few packages (#12947 )	2019-09-26 10:25:12 +02:00
routino
rpcsvc-proto
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
saga-gis
sailfish
salmon	salmon package: add version 0.14.1 (#12646 )	2019-08-30 18:22:59 -07:00
sambamba
samblaster
samrai
samtools
sandbox
sas
satsuma2
savanna	Dataspaces: Fix Fetch URL, Savanna Spec (#13001 )	2019-10-01 14:52:44 -07:00
saws
sbt
scala
scalasca
scallop
scalpel	Scalpel package: remove CMake dependency (#12631 )	2019-08-29 14:03:12 -07:00
scan-for-matches
scons
scorec-core
scorep	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303 )	2019-08-08 22:44:33 -05:00
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
sdl2-image
sdsl-lite
seacas	SEACAS package: add fixed versions and adios2 variant (#12503 )	2019-08-23 15:08:02 -07:00
sed
sentieon-genomics
seqan
seqkit
seqprep	seqprep: add zlib dependency. (#13062 )	2019-10-08 20:50:51 -05:00
seqtk
serf
sessreg
setxkbmap
sga
shadow	adding shadow-uidmap (#12750 )	2019-09-07 17:36:45 -05:00
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid
simplemoc
simul
simulationio
singularity	Singularity 3.4.1 still needs the makefile patch (#13008 )	2019-10-02 11:59:11 -05:00
singularity-legacy
sirius	SIRIUS package: add v6.3.2 + Python/MKL support (#12472 )	2019-08-23 15:51:51 -07:00
skilion-onedrive
skopeo	Fix skopeo dependencies (#12425 )	2019-08-14 19:14:33 -05:00
sl
slate
sleef
slepc	petsc, slepc: add new versions - 3.12.0 (#12979 )	2019-09-30 13:18:11 -05:00
slurm
smalt
smof
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
span-lite
spark
sparsehash
sparta
spdlog	spdlog: added version 1.4.1 (#12917 )	2019-09-24 12:19:19 +02:00
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite	Add SQLite 3.29.0 (#12862 )	2019-09-18 14:36:41 -05:00
sqlitebrowser
squashfs
squid
sra-toolkit
ssht
sspace-longread	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stata
stc
steps
stow
strace	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack
sublime-text
subread	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
subversion
suite-sparse
sumaclust
sundials
superlu
superlu-dist	superlu-dist: add openmp variant (#13052 )	2019-10-04 13:48:56 -05:00
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swftools	Update R CRAN packages (#12019 )	2019-08-30 18:22:13 -05:00
swiftsim
swig	Update SWIG versions and add Fortran fork (#12185 )	2019-08-11 12:58:12 -05:00
symengine
sympol
sz
tabix	tabix: add zlib dependency. (#13064 )	2019-10-08 20:48:37 -05:00
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian	added tasmanian version 7.0 to spack (#13003 )	2019-10-02 18:35:49 -05:00
tassel
tau	Tau package: turn off unsupported variants by default on OSX (#12890 )	2019-09-27 17:16:44 -07:00
tcl
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf	Removed references to '(-march\|-mtune\|-mcpu)=native' (#12948 )	2019-09-26 10:02:08 +02:00
tecplot	Add tecplot recipe (#12688 )	2019-09-04 09:25:43 -05:00
templight	Update target comparison semantic for a few packages (#12947 )	2019-09-26 10:25:12 +02:00
templight-tools
tetgen
tethex
texinfo
texlive
texstudio	New package: TexStudio (#12301 )	2019-08-12 14:48:28 -05:00
textparser	textparser: new package (#12713 )	2019-09-05 09:37:21 -05:00
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time
tinyxml
tinyxml2
tioga
tippecanoe	newpackage/tippecanoe (#12319 )	2019-08-09 10:18:26 -05:00
tix
tk
tldd
tmalign
tmhmm
tmux	cppflags point to ncurses headers (#12691 )	2019-09-04 10:06:35 -05:00
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder	The perl-uri-escape package duplicates perl-uri (#12971 )	2019-09-29 09:27:42 -05:00
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos	Generalize STK package settings in Trilinos (#11917 )	2019-08-07 16:11:15 -05:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore
trimmomatic
trinity	The perl-uri-escape package duplicates perl-uri (#12971 )	2019-09-29 09:27:42 -05:00
trinotate
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx
udunits2
ufo-core
ufo-filters
umap
umoci	Package umoci dependency (#12422 )	2019-08-14 17:35:52 -05:00
umpire
unblur
uncrustify
unibilium
unifyfs	UnifyFS: new package - rename from UnifyCR (#12439 )	2019-08-20 11:13:22 -05:00
unison
units
unittest-cpp
unixodbc
unrar	unrar: Add package (#12908 )	2019-10-06 09:16:25 -05:00
unuran	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
unzip
upcxx	Upcxx package: remove warning, add version 2019.9.0 (#12880 )	2019-09-24 13:25:05 -07:00
uriparser	Add uriparser package (#12834 )	2019-09-18 12:52:40 -05:00
usearch
util-linux	cryptsetup package: dont vendor libuuid in util-linux (#12839 )	2019-09-17 11:22:10 -07:00
util-macros
uuid
uvw
valgrind
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt	vdt: simplified recipe by removing SIMD variants (#12954 )	2019-09-28 13:41:57 -05:00
vecgeom	flake8: make entire repository pass `spack flake8 -a`	2019-09-07 23:59:10 -07:00
veclibfort
vegas2
veloc
velvet	targets: adjust packages to use new specific targets semantics	2019-09-20 00:51:37 -07:00
verilator
verrou
vesta	Add Vesta recipe (#12581 )	2019-09-01 10:41:57 -05:00
videoproto
viennarna
viewres
vigra
vim
virtualgl
visit	Update VisIt to version 3.0.1 and fix on mac (#12396 )	2019-08-15 10:13:45 -05:00
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk	Update VisIt to version 3.0.1 and fix on mac (#12396 )	2019-08-15 10:13:45 -05:00
vtkh
vtkm	Update the VTK-m package with better defaults and cuda corrections (#12850 )	2019-10-04 15:12:58 -04:00
wannier90
warpx
watch	watch: added new package (#13044 )	2019-10-07 11:11:17 +02:00
wcslib	wcslib: fix darwin install name (#12868 )	2019-09-18 22:44:38 -05:00
wget
wgsim
windowswmproto
wireshark
wordnet
workrave
wt
wtdbg2
wxpropgrid
wxwidgets
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdmf3	xdmf3: new package (#12778 )	2019-09-16 12:02:07 -04:00
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios	The perl-uri-escape package duplicates perl-uri (#12971 )	2019-09-29 09:27:42 -05:00
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsd
xsdk	Spack BundlePackage: a group of other packages (#11981 )	2019-08-22 11:08:23 -07:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xssp	Add XSSP recipe (#12679 )	2019-09-02 10:00:57 -05:00
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp
yara
yasm
yorick
z3
zeromq
zfp	ZFP: CMake Package (#12999 )	2019-10-01 23:28:36 -07:00
zip
zlib
zoltan	Add int64 variant to pumi and zoltan (#12630 )	2019-08-31 14:28:56 -05:00
zsh
zstd	zstd: fix build linking error (#12413 )	2019-08-13 21:09:25 -05:00