44 lines
1.3 KiB
Python
44 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import glob
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class SnapKorf(MakefilePackage):
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"""SNAP is a general purpose gene finding program suitable for both
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eukaryotic and prokaryotic genomes."""
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homepage = "http://korflab.ucdavis.edu/software.html"
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url = "http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz"
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version('2013-11-29', sha256='e2a236392d718376356fa743aa49a987aeacd660c6979cee67121e23aeffc66a')
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depends_on('perl', type=('build', 'run'))
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depends_on('boost')
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depends_on('sqlite')
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depends_on('sparsehash')
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conflicts('%gcc@5:', when='@2013-11-29')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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progs = ['snap', 'fathom', 'forge', 'depend', 'exonpairs', 'hmm-info']
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for p in progs:
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install(p, prefix.bin)
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files = glob.iglob('*.pl')
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for file in files:
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install(file, prefix.bin)
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install_tree('Zoe', prefix.Zoe)
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install_tree('HMM', prefix.HMM)
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install_tree('DNA', prefix.DNA)
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def setup_run_environment(self, env):
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env.set('ZOE', self.prefix)
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env.prepend_path('PATH', self.prefix)
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