27 lines
1.0 KiB
Python
27 lines
1.0 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Preseq(MakefilePackage):
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"""The preseq package is aimed at predicting and estimating the complexity
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of a genomic sequencing library, equivalent to predicting and
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estimating the number of redundant reads from a given sequencing depth
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and how many will be expected from additional sequencing using an
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initial sequencing experiment."""
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homepage = "https://github.com/smithlabcode/preseq"
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url = "https://github.com/smithlabcode/preseq/releases/download/v2.0.2/preseq_v2.0.2.tar.bz2"
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version("2.0.3", sha256="747ddd4227515a96a45fcff0709f26130386bff3458c829c7bc1f3306b4f3d91")
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version("2.0.2", sha256="1d7ea249bf4e5826e09697256643e6a2473bc302cd455f31d4eb34c23c10b97c")
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depends_on("samtools")
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depends_on("gsl")
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def setup_build_environment(self, env):
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env.set("PREFIX", self.prefix)
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