52c0127fc7
* feature (packages): implement `odgi` package This commit re-implements odgi package (superseded by #38741) * fix (packages): remove redundant `requires()` from odgi package This commit removes redundant use of `requires()` for gcc version in the `odgi` package
49 lines
1.6 KiB
Python
49 lines
1.6 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Odgi(CMakePackage):
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"""Optimized dynamic genome/graph implementation.
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Odgi provides an efficient and succinct dynamic DNA sequence graph model, as
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well as a host of algorithms that allow the use of such graphs in
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bioinformatic analyses.
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"""
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homepage = "https://github.com/pangenome/odgi"
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git = "https://github.com/pangenome/odgi.git"
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# notify when the package is updated.
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maintainers("tbhaxor", "EbiArnie")
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# <<< Versions list starts here
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version("0.8.3", commit="34f006f31c3f6b35a1eb8d58a4edb1c458583de3", submodules=True)
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# >>> Versions list ends here
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# compilation problem with ninja
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generator("make", default="make")
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# the range is required to successfully build the program
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requires("%gcc", msg="Package odgi depends on the gcc C++ compiler")
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conflicts(
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"%gcc@:9.2,13:", msg="Unsupported compiler version. Recommended range is 9.3 -> 12.x"
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)
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# <<< Dependencies list starts here
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depends_on("python")
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depends_on("py-pybind11")
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depends_on("sdsl-lite")
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depends_on("libdivsufsort")
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depends_on("jemalloc")
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# >>> Dependencies list ends here
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def cmake_args(self):
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args = [
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"-DCMAKE_CXX_STANDARD_REQUIRED:BOOL=ON",
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"-DPYTHON_EXECUTABLE:FILEPATH={0}".format(self.spec["python"].command),
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]
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return args
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