52f46d2bee
* Adding version 2.4.3 to ViennaRNA * Replaced tab indent with spaces Flake8 error correction * no swig for viennarna v2.4.3 only * correcting version/argument conditional syntax error
65 lines
2.6 KiB
Python
65 lines
2.6 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Viennarna(AutotoolsPackage):
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"""The ViennaRNA Package consists of a C code library and several
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stand-alone programs for the prediction and comparison of RNA secondary
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structures.
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"""
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homepage = "https://www.tbi.univie.ac.at/RNA/"
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url = "https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ViennaRNA-2.4.3.tar.gz"
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version('2.4.3', '41be2fd36a5323a35ed50debfc7bd118')
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version('2.3.5', '4542120adae9b7abb605e2304c2a1326')
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variant('sse', default=True, description='Enable SSE in order to substantially speed up execution')
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variant('perl', default=True, description='Build ViennaRNA with Perl interface')
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variant('python', default=True, description='Build ViennaRNA with Python interface')
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depends_on('perl', type=('build', 'run'))
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depends_on('python', type=('build', 'run'))
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depends_on('libsvm')
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depends_on('gsl')
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def url_for_version(self, version):
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url = 'https://www.tbi.univie.ac.at/RNA/download/sourcecode/{0}_x/ViennaRNA-{1}.tar.gz'
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return url.format(version.up_to(2).underscored, version)
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def configure_args(self):
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args = self.enable_or_disable('sse')
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args += self.with_or_without('python')
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args += self.with_or_without('perl')
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if self.spec.satisfies('@2.4.3:'):
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args.append('--without-swig')
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if 'python@3:' in self.spec:
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args.append('--with-python3')
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return args
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