49 lines
1.5 KiB
Python
49 lines
1.5 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from glob import glob
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from spack.package import *
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class Cdhit(MakefilePackage):
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"""CD-HIT is a very widely used program for clustering and comparing
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protein or nucleotide sequences."""
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homepage = "http://cd-hit.org/"
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url = "https://github.com/weizhongli/cdhit/archive/V4.6.8.tar.gz"
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license("GPL-2.0-only")
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version("4.8.1", sha256="f8bc3cdd7aebb432fcd35eed0093e7a6413f1e36bbd2a837ebc06e57cdb20b70")
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version("4.6.8", sha256="37d685e4aa849314401805fe4d4db707e1d06070368475e313d6f3cb8fb65949")
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depends_on("cxx", type="build") # generated
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maintainers("snehring")
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variant("openmp", default=True, description="Compile with multi-threading support")
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variant("zlib", default=True, description="Compile with zlib")
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depends_on("perl", type=("build", "run"))
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depends_on("perl-text-nsp", type="run")
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depends_on("zlib-api", when="+zlib", type="link")
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def patch(self):
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for f in glob("*.pl"):
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filter_file("^#!/usr/bin/perl.*$", "#!/usr/bin/env perl", f)
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def build(self, spec, prefix):
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mkdirp(prefix.bin)
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make_args = []
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if spec.satisfies("~openmp"):
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make_args.append("openmp=no")
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if spec.satisfies("~zlib"):
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make_args.append("zlib=no")
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make(*make_args)
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def setup_build_environment(self, env):
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env.set("PREFIX", self.prefix.bin)
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