健美猞猁 5429713eef Add version 2.4.0 for cantera. (#12405)		2019-08-13 19:18:38 -05:00
..
abinit
abyss
accfft
ack
activeharmony
acts-core
adept-utils
adios
adios2	adios2: Fix backwards compatibility version logic for FindMPI (#12241)	2019-08-02 15:27:47 -04:00
adlbx
adol-c
aegean
aida
alan
albany
albert
alglib
allinea-reports
allpaths-lg
alquimia
alsa-lib
aluminum
amber
amg
amg2013
aml
amp
ampliconnoise
amrex	Balay/amrex 19.08 (#12287)	2019-08-05 17:34:01 -05:00
amrvis
andi
angsd
ant
antlr
ants
aoflagger
aom
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx
archer
argobots
argp-standalone
argtable
aria2	new package: aria2 (#12318)	2019-08-08 22:36:13 -05:00
arlecore
arm-forge
armadillo
arpack-ng
arrow
asagi	new package: asagi: create package.py (#11931)	2019-08-13 11:13:41 -05:00
ascent
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core
atk
atlas	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autofact
autogen
automaded
automake
awscli
axel
axl
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc	bdw-gc: add variant for Multithreading (#12223)	2019-08-01 13:29:41 +02:00
bear
beast1
beast2
beast-tracer
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils	Added checksum for binutils@2.32 (#12350)	2019-08-08 23:56:41 -05:00
bioawk
biobloom
biopieces
bismark
bison
bitmap
blasr
blasr-libcpp
blast2go
blast-legacy
blast-plus
blat
blaze	blaze: converted to CMakePackage (#12357)	2019-08-12 14:47:54 -05:00
blis	modified: var/spack/repos/builtin/packages/blis/package.py (#12225)	2019-08-01 09:37:23 -05:00
bliss
blitz
bmake
bmi
bml
bohrium
bolt	packages: Add autotools dependencies to bolt (#12246)	2019-08-02 12:22:51 -07:00
bookleaf-cpp
boost
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
breseq
bridger
brigand
brotli
bsseeker2	Allow bsseeker to build with Python 3 (#12075)	2019-07-30 17:11:14 -05:00
bucky
bumpversion
busco
butter
butterflypack	added a package butterflypack (#12222)	2019-08-02 18:58:30 -05:00
bwa
bwtool
byobu
bzip2
c-blosc	c-blosc package: Add -std=gnu99 flag for gcc (#11959)	2019-08-05 18:04:16 -07:00
c-lime
cabana
caffe
cairo
cairomm
caliper
callpath
camellia
candle-benchmarks
cantera	Add version 2.4.0 for cantera. (#12405)	2019-08-13 19:18:38 -05:00
canu
cap3
capstone
cardioid
cares
casacore
cask
casper
catalyst	catalyst package: Fix paths used for intermediate code generation (#12082)	2019-07-29 15:31:07 -07:00
catch	catch: more versions, new and older. (#12123)	2019-07-25 11:33:03 -05:00
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
ccfits
cctools
cdbfasta
cdd
cddlib
cdecimal
cdhit
cdo
ceed
cereal
ceres-solver
cfitsio
cgal
cgdb	New package: cgdb (#12154)	2019-07-29 17:19:53 -07:00
cgm
cgns
channelflow
chapel
charliecloud
charmpp
chatterbug
check
chill
chlorop
chombo
chrpath
cinch
circos
cistem	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
citcoms
cityhash
clamav
clamr
clapack
claw
cleaveland4
cleverleaf
clfft
clhep
clingo
cln
cloc
cloog
cloverleaf
cloverleaf3d
clp
clustalo
clustalw
cmake	update cmake 3.15.1 checksum (#12182)	2019-07-29 15:13:52 -04:00
cmocka
cmor	CMOR package: add version 3.4.0 (Python3-compatible) (#12076)	2019-07-29 16:12:37 -07:00
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
connect-proxy
constype
converge
coreutils
corset
cosmomc
cosp2
cotter
cowsay
cp2k	CP2K/SIRIUS: add support for building with CUDA, fix CP2K build with MKL (#11418)	2019-08-13 19:59:08 +02:00
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cquery
cram
cromwell	new package: Cromwell (#12309)	2019-08-08 22:39:00 -05:00
cromwell-womtool	new package: Cromwell (#12309)	2019-08-08 22:39:00 -05:00
cryptopp
cscope
csdp
ctffind	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
cub
cube	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303)	2019-08-08 22:44:33 -05:00
cubelib	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303)	2019-08-08 22:44:33 -05:00
cubew	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303)	2019-08-08 22:44:33 -05:00
cuda
cuda-memtest
cudnn
cufflinks
cups
curl
cvs
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dateutils
davix
dbcsr
dbus
dcmtk
dd4hep
dealii
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign-tx	dialign-tx: build on ARM. (#12210)	2019-08-02 19:02:36 -05:00
diamond
diffsplice
diffutils
dimemas
direnv
discovar
discovardenovo
dislin
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
draco	Add a new version (7.2) of draco. (#11852)	2019-07-28 22:15:21 -05:00
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst
dysco
ea-utils
easybuild
ebms
eccodes	Add eccodes 2.13.0 (#12077)	2019-07-30 17:11:29 -05:00
ecflow
eclipse-gcj-parser
ecp-io-sdk
ecp-proxy-apps
ecp-viz-sdk
ed
editline
editres
eigen
elasticsearch
elemental
elfutils
elk
elmer-fem
elpa
elsd
elsdc
elsi
emacs
ember
emboss
enchant	enchant@2.2.5: new package (#12349)	2019-08-08 22:50:06 -05:00
energyplus
entrezdirect
environment-modules	environment-modules package: add version 4.3.0 (#12155)	2019-07-27 12:20:39 -05:00
eospac
eqr
er
erfa
ermod	ermod: new package (#12192)	2019-08-02 19:08:35 -05:00
erne
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
eztrace
f18	F18: Fix the location to the f18 binary (#12186)	2019-07-31 15:43:08 +02:00
f90cache
fabtests
falcon
faodel	FAODEL: Add 1.1906.1 (#12180)	2019-08-02 19:14:21 -05:00
fast-global-file-status
fasta
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw
fgsl
figtree
fimpute
findutils
fio
fish
fixesproto
flac
flang
flann
flash
flatbuffers
flatcc	flatcc: add version 0.5.3 (#12358)	2019-08-09 21:32:10 -05:00
flecsale
flecsi
flex
flint
flit
fltk	fltk: fix about variable types (#12292)	2019-08-06 11:07:27 -07:00
flux-core
flux-sched
fluxbox
fmt	Update checksum of fmt 5.3.0 (#12037)	2019-07-28 22:07:51 -05:00
foam-extend
folly
font-util	Small fixes for font-util package (#12148)	2019-07-26 10:32:39 -05:00
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fqtrim
fr-hit
freebayes
freeglut
freetype	Add conflicts statement to freetype for icc (#12111)	2019-07-24 12:33:24 -05:00
freexl
fseq
fsl
fslsfonts
fstobdf
fstrack
ftgl
funhpc
fyba
fzf
g4abla	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4emlow	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4ensdfstate	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4ndl	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4neutronxs	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4photonevaporation	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4pii	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4radioactivedecay	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4realsurface	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4saiddata	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4tendl	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
gapbs
gapcloser
gapfiller
gasnet
gatk
gaudi
gaussian
gawk
gblocks
gcc	gcc: Add 9.2.0 (#12411)	2019-08-13 19:08:12 -05:00
gccmakedep
gccxml
gconf
gcta
gdal	Add GDAL 3.0.1 (#12140)	2019-07-26 09:25:35 +02:00
gdb
gdbm
gdk-pixbuf
gdl	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
geant4	geant4: improvements with respect to building against CLHEP. (#12124)	2019-07-25 08:58:13 -05:00
geant4-data
gearshifft
gemmlowp
genemark-et
genomefinisher	genomefinisher: fixed query on jdk instead of java (#12196)	2019-07-31 08:55:56 +02:00
genometools
geopm
geos
gettext	Fix QT4 build for mac (#10944)	2019-08-01 10:22:35 -07:00
gflags
ghost
ghostscript
ghostscript-fonts
giflib
ginkgo	ginkgo: add maintainers (#12273)	2019-08-04 20:36:04 -05:00
git
git-fat-git
git-imerge
git-lfs	git-lfs: add version 2.8.0 (#12131)	2019-07-25 19:46:03 -05:00
gl2ps
glew
glfmultiples
glib	glib: fix glib dependency build fixes #9992 (#12153)	2019-08-02 15:18:04 -05:00
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt
gmtsar
gnat
gnome-common	gnome-common: new package (#12359)	2019-08-09 21:31:47 -05:00
gnu-prolog
gnupg
gnuplot	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
gnutls
go
go-bootstrap
gobject-introspection
googletest	googletest: Fix reversed +pthreads option (#12128)	2019-07-25 19:50:23 -05:00
gotcha
gource
gperf
gperftools
gpgme	Fix package gpgme dependency (#12410)	2019-08-13 19:08:50 -05:00
gplates
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz	graphviz package: add MacOS fixes and quartz support (#11128)	2019-08-06 16:26:45 -07:00
grass	Package/grass: fix iconv linking issue (#12165)	2019-08-12 13:45:05 -07:00
grib-api
grnboost
groff
gromacs	gromacs: fix CPU optimizations detection (simd=auto) (#12354)	2019-08-09 21:38:16 -05:00
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gtksourceview	gtksourceview: new package (#12387)	2019-08-12 14:44:54 -05:00
gts
guidance
guile	guile: add versions 2.2.1 through 2.2.6 (#12333)	2019-08-08 22:22:17 -05:00
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hc
hdf
hdf5
hdf5-blosc
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea	hisea: build on ARM. (#12302)	2019-08-08 22:45:23 -05:00
hmmer
homer
hoomd-blue
hotspot
hpccg
hpctoolkit
hpcviewer	hpcviewer: update sha sums for version 2019.07 (#12236)	2019-08-02 18:55:46 -05:00
hpgmg	hpgmp package: Don't add cpu=native on ARM when using gcc 5.x or before (#12034)	2019-07-29 16:53:59 -07:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hugo
hunspell	bugfix: hunspell: add missing gettext dependency (#12347)	2019-08-09 10:17:57 -05:00
hwloc
hybpiper
hydra
hydrogen
hyphy
hypre
i3
ibm-java
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
iegenlib	Fixed broken iegenlib package (#12229)	2019-08-09 10:14:17 -05:00
igraph
igvtools	igvtools: fixed query on jdk instead of java (#12195)	2019-07-31 14:49:51 +02:00
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio
intel-pin
intel-tbb
intel-xed
interproscan	interproscan: new package at 5.36-75.0 (#12130)	2019-07-25 19:49:42 -05:00
intltool
ioapi	ioapi: add version 3.2 (#12088)	2019-07-23 12:10:01 -05:00
ior
iozone
iperf2
iperf3
ipopt
isaac
isaac-server	isaac-server: Don't add -march=native on ARM and gcc 5.x or before. (#12042)	2019-07-23 16:48:25 -05:00
isl
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-fortran
json-glib
jsoncpp	Preventing jsoncpp from building tests (#11948)	2019-07-31 12:18:25 -05:00
jube	Set default resource manager to 'none' (#12092)	2019-08-02 19:23:14 -05:00
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3
kealib	kealib: fix incorrect md5sum for v1.4.11 (#12126)	2019-07-26 15:14:46 -05:00
kentutils
kibana
kim-api	kim-api: added version 2.1.2 (#12189)	2019-07-31 09:13:13 +02:00
kitty
kmergenie
kokkos
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
ladot
laghos
lame	lame & libmad: Added two new packages for sox mp3 support. (#11964)	2019-07-25 10:40:50 -05:00
lammps	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
last
lastz
latte
launchmon	patch launchmon to fix char * conversion error (#12219)	2019-07-31 16:47:35 -05:00
lazyten
lbann
lbxproxy
lbzip2
lcals
lcms
ldc
ldc-bootstrap
legion	Add HDF5 variant to Legion package (#12221)	2019-08-01 10:33:29 -06:00
lemon
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint
libcircle
libconfig	libconfig: add version 1.7.1 (#12324)	2019-08-10 11:08:53 -05:00
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric	Add EFA fabric to libfabric	2019-07-23 12:08:33 -07:00
libffi
libffs
libfive	Add new package: libfive@master (#12334)	2019-08-09 18:10:00 -05:00
libflame	modified: var/spack/repos/builtin/packages/libflame/package.py (#12379)	2019-08-10 11:48:58 -05:00
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libiberty
libice
libiconv
libidn2
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmad	lame & libmad: Added two new packages for sox mp3 support. (#11964)	2019-07-25 10:40:50 -05:00
libmatheval
libmaxminddb
libmesh
libmng
libmo-unpack
libmongoc
libmonitor
libnbc
libnl
libnova
libnrm
libnsl
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libplist
libpmemobj-cpp
libpng
libpsl
libpthread-stubs
libquo
librom
libseccomp
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium
libspatialindex
libspatialite
libsplash
libssh
libssh2
libsvm
libszip
libtasn1
libtermkey
libtiff
libtirpc
libtomlc99
libtool
libunistring
libunwind
libusb
libusbmuxd
libuuid
libuv
libvdwxc
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc	libxc: Make configure recognize Fujitsu compiler (#12147)	2019-07-26 12:09:52 -05:00
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm	LIBXSMM package: add version 1.13 and optional shared libs (#11998)	2019-07-29 17:14:41 -07:00
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
libyogrt
libzip
liggghts	liggghts: added version 3.8.0 (#12242)	2019-08-02 18:53:06 -05:00
lighttpd
likwid
linkphase3
linux-headers
listres
llvm	Use correct GCC installation when installing clang with GCC (#12381)	2019-08-11 12:40:12 -05:00
llvm-openmp
llvm-openmp-ompt
lm-sensors
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics	Add Magics 4.1.0 (#12078)	2019-07-30 17:11:47 -05:00
magma	Add version 2.5.1 of MAGMA released today (#12274)	2019-08-04 20:36:48 -05:00
makedepend
mallocmc
man-db
manta
mapserver
maq
margo
mariadb
mariadb-c-client
masa
masurca
mathematica
matio
matlab
maven
maverick
mawk
mbedtls
mc
mcl
mdtest
med
meep
mefit
megadock
megahit
memaxes
meme
memkind
memsurfer
meraculous
mercurial
mercury
mesa
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metis
mfem
mgis
microbiomeutil
migrate
mii	mii: new package at 1.0.2 (#12184)	2019-07-30 16:16:41 -05:00
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2	minimap2, py-mappy: change dependency and build on ARM (#12127)	2019-08-02 19:21:33 -05:00
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg
moab	Fix build for moab 4.9.2 on gcc8 (#12328)	2019-08-10 11:08:13 -05:00
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-cxx-driver
mono
montage
mosh
mothur
motif
motioncor2
mount-point-attributes	fix mpa package build error with a patch (#12217)	2019-07-31 16:48:06 -05:00
mozjs
mpark-variant
mpc
mpdecimal
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils
mpilander
mpileaks	Update Package Creation Tutorial for PEARC19 (#12209)	2019-07-31 12:54:09 -05:00
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
multitail
multitime
multiverso
mummer
mumps
munge
muparser
muscle
muse
musl	Packages/musl (#12288)	2019-08-05 20:16:14 -05:00
muster
mutationpp
mvapich2
mxml
mxnet
mysql	mysql package: New versions, add conflicts, cope with use of dtrace. (#11356)	2019-08-02 10:51:02 -07:00
nag
nalu
nalu-wind
namd
nano
nanoflann	nanoflann: Don't add -mtune=native on ARM and gcc 5.x (#12093)	2019-07-23 16:47:28 -05:00
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit	ncbi-toolkit: add version 22_0_0 (#12278)	2019-08-07 14:18:36 -05:00
nccl	Add NCCL 2.4.8-1 (#12362)	2019-08-10 11:53:29 -05:00
nccmp
ncdu
ncftp
ncl
nco
ncurses	ncurses: fix pic and opt flags (#12272)	2019-08-06 22:21:25 -05:00
ncview
ndiff
nek5000
nekbone
nekcem
nektar
nektools
neovim
nest
netcdf
netcdf-cxx
netcdf-cxx4	netcdf-cxx4: add m4 dep for call to autoreconf (#12325)	2019-08-08 22:29:42 -05:00
netcdf-fortran
netgauge
netgen
netlib-lapack	Apply xl patch for cce@9: to fix cmake. (#12392)	2019-08-12 14:41:00 -05:00
netlib-scalapack
netlib-xblas
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
nim
ninja
ninja-fortran
nix
nlohmann-json
nlopt
nmap
nnvm	nnvm: cmake bug is fixed. (#12113)	2019-07-24 12:31:49 -05:00
node-js
notmuch
npb
npm
npth
nrm
nseg
nspr
ntpoly
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
of-catalyst
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2	patch opa-psm2 to build with spack wrappers (#12407)	2019-08-13 19:13:21 -05:00
opam
opari2	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303)	2019-08-08 22:44:33 -05:00
openbabel
openblas	openblas: fix target detection for cross-compiling (#12390)	2019-08-12 14:43:04 -05:00
opencoarrays
opencv
openexr
openfast
openfoam
openfoam-org
openfst
opengl	OpenGL package: always provides gl (#12158)	2019-07-29 12:11:53 -07:00
openglu
openimageio
openjdk
openjpeg
openkim-models	update to kim-api-2.1.1 and openkim-models-2019-07-25 (#12137)	2019-07-26 13:06:10 -05:00
openmc
openmpi
opennurbs
openpa
openpmd-api	openPMD-api: pre-load depend libs (#12279)	2019-08-05 14:02:23 -05:00
openscenegraph
openslide
openspeedshop
openspeedshop-utils
openssh
openssl	openssl package: add versions including 1.1.1c (#12342)	2019-08-08 17:04:53 -07:00
opium
optional-lite
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osu-micro-benchmarks
otf
otf2	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303)	2019-08-08 22:44:33 -05:00
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
paml
panda
pandaseq
pango
pangomm
papi
papyrus
paradiseo
parallel
parallel-netcdf
paraver	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
paraview
parmetis
parmgridgen
parquet
parsimonator	parsimonator: Enable build on non x86_64 hosts. (#12194)	2019-08-02 19:07:43 -05:00
parsplice
partitionfinder
pasta
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl	Perl take in flags (#12112)	2019-07-24 12:32:49 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-logger-simple
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intspan
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml
perl-yaml-libyaml
petsc
pexsi
pfft
pflotran
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist	phist: added version 1.8.0 (#12201)	2019-07-31 15:35:59 +02:00
phrap-crossmatch-swat
phred
phylip
phyluce
picard
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism	PISM package: add version 1.1.4 (#12083)	2019-07-29 15:26:03 -07:00
pixman
pkg-config
pkgconf
planck-likelihood
plasma	Version 19.8.1 of PLASMA (#12299)	2019-08-07 00:08:59 -05:00
platypus
plink	New Plink beta version (#12352)	2019-08-09 10:22:18 -05:00
plplot	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
plumed
pmdk
pmgr-collective
pmix
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler	New package: TexStudio (#12301)	2019-08-12 14:48:28 -05:00
poppler-data
porta
portage
portcullis
postgresql
powerapi
ppl
pplacer
prank
precice	Add preCICE xSDK support (#12356)	2019-08-11 12:19:44 -05:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf
proxymngr
prrte
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi	pumi: new version 2.2.1 (#12282)	2019-08-06 22:09:46 -05:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py	Add py-setuptools as a build dependency for py-absl-py (#12109)	2019-07-24 12:33:45 -05:00
py-adios
py-advancedhtmlparser
py-aenum
py-affine
py-alabaster
py-alembic
py-antlr4-python3-runtime
py-apache-libcloud
py-apipkg	package/py-apipkg add new version, add sha256 sums (#12260)	2019-08-03 18:38:34 -05:00
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astor
py-astroid
py-astropy
py-astunparse
py-async-generator
py-atomicwrites
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-backports-tempfile	new package: py-backports-tempfile (#12261)	2019-08-04 16:10:24 -05:00
py-backports-weakref	new package: py-backports-weakref (#12262)	2019-08-03 18:37:10 -05:00
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biomine
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach
py-blessed
py-blessings
py-bokeh
py-boltons
py-boto3
py-botocore
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cachetools	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-cairocffi	Add py-cairocffi package (#12161)	2019-07-30 17:13:02 -05:00
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi	Add py-certifi 2019.6.16 (#12339)	2019-08-08 21:57:01 -05:00
py-cf-units
py-cffi
py-cftime
py-chardet
py-checkm-genome
py-cheetah
py-click
py-click-plugins
py-cligj
py-clipboard	Add py-clipboard package (#12364)	2019-08-10 11:52:52 -05:00
py-cloudpickle
py-cogent
py-colorama
py-colorlog	new package: py-colorlog (#12265)	2019-08-03 18:36:29 -05:00
py-colormath
py-colorpy	new package: py-colorpy (#12266)	2019-08-03 18:36:17 -05:00
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython
py-dask
py-dbf
py-decorator
py-deeptools
py-dendropy
py-descartes
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-earthengine-api	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-exodus	new package: py-exodus (#12291)	2019-08-06 23:11:56 -05:00
py-fastaindex
py-fasteners
py-faststructure
py-filelock
py-fiona
py-fiscalyear
py-flake8	Add flake8 3.7.8 (#12141)	2019-07-26 12:11:07 -05:00
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye	py-flye: change to build ARM. (#12176)	2019-08-02 19:15:49 -05:00
py-fn
py-fparser
py-freezegun
py-funcsigs
py-functools32
py-future
py-futures
py-fypp
py-gdbgui
py-gee-asset-manager	Add py-gee-asset-manager package (#12365)	2019-08-10 11:52:38 -05:00
py-geeadd	Add py-geeadd package (#12366)	2019-08-10 11:52:24 -05:00
py-geeup	Add py-geeup package (#12367)	2019-08-10 11:52:10 -05:00
py-genders
py-genshi
py-geopandas
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-google-api-core	Add py-google-api-core package (#12368)	2019-08-10 11:51:56 -05:00
py-google-api-python-client	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-google-auth	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-google-auth-httplib2	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-google-cloud-core	Add py-google-cloud-core package (#12369)	2019-08-10 11:51:41 -05:00
py-google-cloud-storage	Add py-google-cloud-storage package (#12370)	2019-08-10 11:51:27 -05:00
py-google-resumable-media	Add py-google-resumable-media package (#12371)	2019-08-10 11:51:12 -05:00
py-googleapis-common-protos	Add py-googleapis-common-protos package (#12372)	2019-08-10 11:50:58 -05:00
py-gpaw
py-graphviz
py-greenlet
py-griddataformats
py-guidata	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-guiqwt
py-h5glance
py-h5py
py-hdfs
py-hepdata-validator
py-hpccm
py-html2text
py-html5lib
py-htseq
py-httpbin
py-httplib2	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-invoke
py-ipaddress
py-ipdb
py-ipykernel
py-ipython	Fix some Mac constraint checks (#12138)	2019-07-29 15:05:02 -07:00
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-jmespath
py-joblib
py-jprops
py-jpype
py-jsonpatch
py-jsonpointer
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-jupyterhub
py-keras
py-keras-applications
py-keras-preprocessing
py-kiwisolver
py-kmodes
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-luigi
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-markdown
py-markupsafe
py-matplotlib	Fix py-matplotlib build with Intel compiler (#12144)	2019-08-11 12:57:31 -05:00
py-mccabe
py-mdanalysis
py-meep	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
py-memory-profiler
py-merlin
py-metasv
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mlxtend
py-mo-pack
py-mock
py-modred
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py	py-mpi4py: Added build argument for mpicc path (#12191)	2019-08-02 19:09:37 -05:00
py-mpmath
py-multiprocess
py-multiqc
py-munch
py-mx
py-mxnet
py-myhdl
py-mysql-connector
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-nc-time-axis
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr	py-numexpr: switch from PyPI to GitHub download (#12360)	2019-08-09 22:27:34 -05:00
py-numexpr3
py-numpy	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
py-numpydoc
py-oauth2client	Add py-oauth2client package (#12373)	2019-08-10 11:50:43 -05:00
py-olefile
py-onnx
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib
py-packaging
py-palettable
py-pandas	Add pandas 0.25.0 (#12173)	2019-07-30 17:16:32 -05:00
py-paramiko
py-partd
py-pathlib	Add py-pathlib package (#12374)	2019-08-10 11:50:24 -05:00
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pauvre
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow
py-pint
py-pip
py-pipits	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
py-pispino	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
py-pkgconfig
py-plotly
py-pluggy
py-ply
py-pmw
py-poster	Port py-poster to Python 3 (#12363)	2019-08-10 11:53:15 -05:00
py-pox
py-ppft
py-prettytable
py-progress
py-progressbar2
py-projectq
py-prometheus-client
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow
py-pyasn1	Add py-pyasn1 0.4.6 (#12251)	2019-08-02 20:09:15 -05:00
py-pyasn1-modules	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-pybedtools
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pydv
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject	glib: fix glib dependency build fixes #9992 (#12153)	2019-08-02 15:18:04 -05:00
py-pygpu
py-pygresql
py-pygtk
py-pyke
py-pylint
py-pymatgen
py-pyminifier
py-pymol	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
py-pyomo	py-pyomo: new package at 5.6.6 (#12134)	2019-07-26 10:38:25 -05:00
py-pypar
py-pyparsing
py-pypeflow
py-pyperclip	Add py-pyperclip package (#12375)	2019-08-10 11:50:10 -05:00
py-pyprof2html
py-pyproj
py-pyqi
py-pyqt4	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-pyqt5	py-pyqt5: add missing py-enum34 dependency (#12224)	2019-08-01 13:30:35 +02:00
py-pyrad
py-pyrosar
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysmartdl	Add py-pysmartdl package (#12376)	2019-08-10 11:49:55 -05:00
py-pysocks
py-pyspark
py-pysqlite
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-isort	New package: py-pytest-isort (#12160)	2019-07-29 14:02:06 -07:00
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-levenshtein
py-python-socketio
py-python-utils
py-pythonqwt	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-pytz
py-pyugrid
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-quantities
py-quast
py-queryablelist
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests-futures	new package: py-requests-futures (#12264)	2019-08-03 18:36:42 -05:00
py-requests-toolbelt
py-restview
py-retrying	Add py-retrying package (#12377)	2019-08-10 11:49:41 -05:00
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-s3transfer
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scikit-optimize
py-scipy	py-scipy package: add version 1.3.0 (#12171)	2019-07-29 11:57:59 -07:00
py-scoop
py-seaborn
py-selenium	Add py-selenium package (#12378)	2019-08-10 11:49:25 -05:00
py-send2trash
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spatialist
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxautomodapi
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-stratify
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tables	Re-add py-cython dependency to py-tables (#12338)	2019-08-08 21:57:16 -05:00
py-tabulate
py-tappy
py-tblib
py-terminado
py-testinfra
py-tetoolkit
py-texttable
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-torch	PyTorch package: add version 1.1.0 (#12174)	2019-07-29 11:39:05 -07:00
py-torchvision	New package: py-torchvision (#12175)	2019-07-29 11:42:08 -07:00
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-tuiview	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-twisted
py-typesentry
py-typing
py-typing-extensions
py-tzlocal
py-udunits
py-umi-tools
py-unicycler
py-unittest2
py-unittest2py3k
py-uritemplate	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-urllib3
py-urwid
py-usgs	new package: py-usgs (#12263)	2019-08-03 18:36:55 -05:00
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-warlock
py-wcsaxes
py-wcwidth
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
py-widgetsnbextension
py-wrapt
py-wxpython	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
py-xarray
py-xattr
py-xdot
py-xenv
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zmq
py-zope-event
py-zope-interface
pythia6
python	Fix QT4 build for mac (#10944)	2019-08-01 10:22:35 -07:00
qbank
qbox
qca
qhull
qjson
qmcpack	QMCPACK Update July 2019 (#12097)	2019-07-24 12:28:35 -05:00
qmd-progress
qorts
qrupdate
qt	Fix QT4 build for mac (#10944)	2019-08-01 10:22:35 -07:00
qt-creator
qtgraph
qthreads
quantum-espresso	Quantum Espresso package: Specify F90 compiler (#12119)	2019-07-29 15:53:39 -07:00
quinoa
qwt
qwtpolar	new package: qwtpolar (#12382)	2019-08-11 12:39:58 -05:00
r
r3d
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beanplot
r-bfast
r-bfastspatial
r-bglr
r-bh
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-caret
r-caroline
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat
r-commonmark
r-complexheatmap
r-compositions
r-construct
r-convevol
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-crul
r-ctc
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-desc
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-edger
r-ellipse
r-emmli
r-energy
r-ensembldb
r-ergm
r-evaluate
r-expint
r-expm
r-factoextra
r-factominer
r-fansi
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gcrma
r-gdalutils
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph
r-geonames
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gplots
r-graph
r-grbase
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-gwmodel
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-hoardr
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-intervals
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-isdparser
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-loo
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-nortest
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-optparse
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phylostratr
r-phytools
r-picante
r-pillar
r-pkgbuild
r-pkgconfig
r-pkgload
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-popgenome
r-popvar
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-qtl
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomfields
r-randomfieldsutils
r-randomforest
r-randomglm
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhmmer
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-rnoaa
r-robust
r-robustbase
r-rocr
r-rodbc
r-rots
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup
r-rrcov
r-rrpp
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstantools
r-rstudioapi
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-spacetime
r-sparsem
r-spatial
r-spatialreg
r-spdata
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squash
r-sseq
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-taxizedb
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
r-tigris
r-timedate
r-tmixclust
r-topgo
r-triebeard
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-urltools
r-utf8
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vfs
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-wgcna
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3	Resolves #11487. (#12136)	2019-08-02 19:19:39 -05:00
rankstr
rapidjson	rapidjson: Don't add -march=native on ARM and gcc 5.x or before. (#12117)	2019-07-24 12:30:32 -05:00
ravel
raxml	raxml: compile n non-x86 hosts. (#12208)	2019-08-02 19:04:25 -05:00
ray
rclone
rdma-core
rdp-classifier
rdptools	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
re2c
readfq
readline
recon
recordproto
redis
redset
redundans
regcm
relax
relion	added relion 3.0.7 - removed deprecated versions (#12101)	2019-07-23 18:13:00 -05:00
rempi
rename
rendercheck
renderproto
repeatmasker
repeatmodeler
repeatscout
resourceproto
revbayes
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb	rocksdb: Don't add -march=native on ARM and gcc 5.x or before. (#12108)	2019-07-23 22:33:05 -05:00
rockstar
rodinia
root
rose
ross
routino
rpcsvc-proto
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
saga-gis	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
sailfish
salmon
sambamba
samblaster
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop
scalpel
scan-for-matches
scons
scorec-core
scorep	Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303)	2019-08-08 22:44:33 -05:00
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2	sdl2: fix dependency for libxext and build on ARM (#12351)	2019-08-09 10:24:16 -05:00
sdl2-image
sdsl-lite
seacas
sed
sentieon-genomics
seqan
seqkit	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid
simplemoc
simul
simulationio	SimulationIO package: add version 9.0.1 (#12079)	2019-07-29 15:40:57 -07:00
singularity	singularity: update version to 3.3.0 (#12295)	2019-08-12 15:38:15 -05:00
singularity-legacy
sirius	CP2K/SIRIUS: add support for building with CUDA, fix CP2K build with MKL (#11418)	2019-08-13 19:59:08 +02:00
skilion-onedrive
skopeo	packages/skopeo (#12348)	2019-08-12 11:28:05 -05:00
sl
slate
sleef
slepc	slepc: update python dependencies to be in sync with petsc (#12250)	2019-08-02 20:07:29 -05:00
slurm
smalt
smof
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox	lame & libmad: Added two new packages for sox mp3 support. (#11964)	2019-07-25 10:40:50 -05:00
spades
span-lite
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite
sqlitebrowser
squashfs
squid
sra-toolkit
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stata
stc
steps
stow
strace
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials
superlu
superlu-dist
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig	Update SWIG versions and add Fortran fork (#12185)	2019-08-11 12:58:12 -05:00
symengine
sympol
sz
tabix
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau	Fixed arch setting variants. Activate cray arch automatically. (#11203)	2019-08-02 15:14:43 -05:00
tcl
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
templight
templight-tools
tetgen
tethex
texinfo
texlive
texstudio	New package: TexStudio (#12301)	2019-08-12 14:48:28 -05:00
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time
tinyxml
tinyxml2
tioga
tippecanoe	newpackage/tippecanoe (#12319)	2019-08-09 10:18:26 -05:00
tix
tk
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos	Generalize STK package settings in Trilinos (#11917)	2019-08-07 16:11:15 -05:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore
trimmomatic
trinity
trinotate
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx
udunits2
ufo-core
ufo-filters
umap
umpire
unblur
uncrustify
unibilium
unifycr
unison
units
unittest-cpp
unixodbc
unuran
unzip	unzip: fix build for cray back-end	2019-07-31 20:44:40 -07:00
usearch
util-linux
util-macros
uuid
uvw
valgrind	valgrind: added version 3.15.0 (#12239)	2019-08-02 15:10:37 +02:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt	vdt: add simd variant (#12188)	2019-08-02 19:10:39 -05:00
vecgeom
veclibfort	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
vegas2
veloc
velvet
verilator
verrou
videoproto
viennarna
viewres
vigra	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
vim
virtualgl	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
vtkh
vtkm
wannier90
warpx
wcslib
wget
wgsim
windowswmproto
wireshark
wordnet
workrave
wt
wtdbg2
wxpropgrid	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
wxwidgets	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsd
xsdk	xsdk: phist has a conflict with gcc version <= gcc-4.9.1 (#11946)	2019-07-25 14:01:00 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp
yara
yasm
yorick
z3
zeromq	zeromq package: choose URL based on version; add versions (#12149)	2019-07-29 14:36:33 -07:00
zfp
zip
zlib
zoltan
zsh
zstd