47 lines
2.0 KiB
Python
47 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Bowtie(MakefilePackage):
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"""Bowtie is an ultrafast, memory efficient short read aligner
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for short DNA sequences (reads) from next-gen sequencers."""
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homepage = "https://sourceforge.net/projects/bowtie-bio/"
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url = "https://downloads.sourceforge.net/project/bowtie-bio/bowtie/1.2.1.1/bowtie-1.2.1.1-src.zip"
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version('1.2.1.1', 'ec06265730c5f587cd58bcfef6697ddf')
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variant("tbb", default=False, description="Use Intel thread building block")
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depends_on("tbb", when="+tbb")
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def edit(self, spec, prefix):
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# FIXME: Edit the Makefile if necessary
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# FIXME: If not needed delete this function
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# makefile = FileFilter('Makefile')
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# makefile.filter('CC = .*', 'CC = cc')
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return
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