49 lines
2.2 KiB
Python
49 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Gcta(Package):
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"""GCTA (Genome-wide Complex Trait Analysis) was originally designed to
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estimate the proportion of phenotypic variance explained by all genome-wide
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SNPs for complex traits (the GREML method), and has subsequently extended
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for many other analyses to better understand the genetic architecture of
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complex traits. GCTA currently supports the following analyses."""
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homepage = "http://cnsgenomics.com/software/gcta/#Overview"
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url = "http://cnsgenomics.com/software/gcta/gcta_1.91.2beta.zip"
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version('1.91.2beta_mac', 'ce0882ad35dd9474ffe40911da369274700af1ecb9916c0a355b7bad14850234')
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version('1.91.2beta', '192efb767be1c7ca9c2dac5d2c2317a97c7a9db1f801168d19ad2a51b98d9b10', preferred=True)
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conflicts('@1.91.2beta', when='platform=darwin')
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conflicts('@1.91.2beta_mac', when='platform=linux')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('gcta64', join_path(prefix.bin, 'gcta64'))
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set_executable(join_path(prefix.bin, 'gcta64'))
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