48 lines
2.0 KiB
Python
48 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Trimgalore(Package):
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"""Trim Galore! is a wrapper around Cutadapt and FastQC to consistently
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apply adapter and quality trimming to FastQ files, with extra
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functionality for RRBS data."""
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homepage = "https://github.com/FelixKrueger/TrimGalore"
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url = "https://github.com/FelixKrueger/TrimGalore/archive/0.4.4.tar.gz"
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version('0.4.5', 'c71756042b2a65c34d483533a29dc206')
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version('0.4.4', 'aae1b807b48e38bae7074470203997bb')
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depends_on('perl', type=('build', 'run'))
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depends_on('py-cutadapt', type=('build', 'run'))
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depends_on('fastqc')
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def install(self, spec, prefix):
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filter_file(r'#!/usr/bin/perl', '#!/usr/bin/env perl', 'trim_galore')
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mkdirp(prefix.bin)
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install('trim_galore', prefix.bin)
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