51 lines
1.7 KiB
Python
51 lines
1.7 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Mrtrix3(Package):
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"""MRtrix provides a set of tools to perform various advanced diffusion MRI
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analyses, including constrained spherical deconvolution (CSD),
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probabilistic tractography, track-density imaging, and apparent fibre
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density."""
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homepage = "https://www.mrtrix.org/"
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url = "https://github.com/MRtrix3/mrtrix3/archive/refs/tags/3.0.3.tar.gz"
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git = "https://github.com/MRtrix3/mrtrix3.git"
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version(
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"3.0.4",
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sha256="f1d1aa289cfc3e46e3a8eca93594b23d061c6d50a0cd03727433a7e2cd14f71a",
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preferred=True,
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)
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version("3.0.3", sha256="6ec7d5a567d8d7338e85575a74565189a26ec8971cbe8fb24a49befbc446542e")
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version("2017-09-25", commit="72aca89e3d38c9d9e0c47104d0fb5bd2cbdb536d")
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depends_on("python@2.7:", type=("build", "run"))
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depends_on("py-numpy", type=("build", "run"))
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depends_on("glu")
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depends_on("qt+opengl@4.7:")
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# MRTrix <= 3.0.3 can't build with eigen >= 3.4 due to conflicting declarations
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depends_on("eigen@3.3", when="@3.0.3")
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depends_on("eigen@3.4:", when="@3.0.4:")
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depends_on("zlib-api")
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depends_on("libtiff")
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depends_on("fftw")
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patch("fix_includes.patch", when="@3.0.3:3.0.4")
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conflicts("%gcc@7:", when="@2017-09-25") # MRtrix3/mrtrix3#1041
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def install(self, spec, prefix):
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configure = Executable("./configure")
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build = Executable("./build")
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configure()
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build()
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install_tree(".", prefix)
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def setup_run_environment(self, env):
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env.prepend_path("PATH", self.prefix)
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