27 lines
976 B
Python
27 lines
976 B
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Transabyss(Package):
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"""De novo assembly of RNAseq data using ABySS"""
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homepage = "https://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
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url = "https://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/1.5.5/transabyss-1.5.5.zip"
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version("1.5.5", sha256="7804961c13296c587a1b22180dd3f02091a4494cbbd04fc33c2060599caadb0b")
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depends_on("abyss@1.5.2")
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depends_on("python@2.7.6:", type=("build", "run"))
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depends_on("py-python-igraph@0.7.0:", type=("build", "run"))
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depends_on("blat")
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def install(self, spec, prefix):
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install("transabyss", prefix)
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install("transabyss-merge", prefix)
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install_tree("bin", prefix.bin)
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install_tree("utilities", prefix.utilities)
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