7b9f8abce5
Add language dependencies `c`, `cxx`, and `fortran`. These `depends_on` statements are auto-generated based on file extensions found in source tarballs/zipfiles. The `# generated` comment can be removed by package maintainers after validating correctness.
54 lines
1.9 KiB
Python
54 lines
1.9 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Mmseqs2(CMakePackage):
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"""MMseqs2 (Many-against-Many sequence searching) is a software suite to
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search and cluster huge protein and nucleotide sequence sets"""
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homepage = "https://github.com/soedinglab/MMseqs2"
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url = "https://github.com/soedinglab/MMseqs2/archive/refs/tags/14-7e284.tar.gz"
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license("GPL-3.0-only")
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version("15-6f452", sha256="7115ac5a7e2a49229466806aaa760d00204bb08c870e3c231b00e525c77531dc")
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version("14-7e284", sha256="a15fd59b121073fdcc8b259fc703e5ce4c671d2c56eb5c027749f4bd4c28dfe1")
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version("13-45111", sha256="6444bb682ebf5ced54b2eda7a301fa3e933c2a28b7661f96ef5bdab1d53695a2")
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depends_on("c", type="build") # generated
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depends_on("cxx", type="build") # generated
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variant("openmp", default=False, description="build with OpenMP support")
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variant("mpi", default=False, description="build with MPI support")
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depends_on("zstd")
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depends_on("mpi", when="+mpi")
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# patch to support building with gcc@13:
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patch(
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"https://github.com/soedinglab/MMseqs2/commit/3e43617.patch?full_index=1",
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sha256="673737ac545260e7800ca191c6eee14feef3318d9cfa5005db32bd2ab3c006fe",
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when="@:14 %gcc@13:",
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level=1,
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)
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# apple-clang will build with +openmp with llvm-openmp as a dependency
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# however when running with real data, it threw segmentation faults
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conflicts("%apple-clang", when="+openmp")
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def cmake_args(self):
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spec = self.spec
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args = []
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args.append("-DVERSION_OVERRIDE=%s" % self.spec.version)
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args.append("-DUSE_SYSTEM_ZSTD=1")
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if "~openmp" in spec:
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args.append("-DREQUIRE_OPENMP=0")
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if "~mpi" in spec:
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args.append("-DHAVE_MPI=0")
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return args
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