5bb3538541
* methylcode: added package * pyfasta: added package * py-bsddb3: added package * py-bsddb3: added package * Update package.py * Update package.py * Update package.py * removed fixme comments * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py
45 lines
1.8 KiB
Python
45 lines
1.8 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyMethylcode(PythonPackage):
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"""MethylCoder is a single program that takes of bisulfite-treated
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reads and outputs per-base methylation data. """
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homepage = "https://github.com/brentp/methylcode"
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url = "https://github.com/brentp/methylcode/archive/master.zip"
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version('1.0.0', 'd0ba07c1ab2c74adddd1b23f8e5823e7')
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depends_on('python@2.7.0:2.7.999')
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depends_on('py-six')
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depends_on('py-setuptools')
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depends_on('py-numpy')
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depends_on('py-pyparsing')
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depends_on('py-pyfasta')
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depends_on('py-bsddb3')
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depends_on('bowtie')
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