5d1f965e59
* Fix scikit-learn build with Apple clang * Update compiler unit tests * Fix unit tests * Fix OpenMP dep * recursive=True no longer necessary * Add myself as a maintainer * Specify which versions require OpenMP * Typo fixes * LLVM-OpenMP is the correct dependency, no OMPT * Flake8 fix * Undo Apple Clang OpenMP flag change, split into a separate PR
95 lines
4.6 KiB
Python
95 lines
4.6 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyScikitLearn(PythonPackage):
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"""A set of python modules for machine learning and data mining."""
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homepage = "https://pypi.python.org/pypi/scikit-learn"
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url = "https://pypi.io/packages/source/s/scikit-learn/scikit-learn-0.21.2.tar.gz"
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maintainers = ['adamjstewart']
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install_time_test_callbacks = ['install_test', 'import_module_test']
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import_modules = [
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'sklearn', 'sklearn.tree', 'sklearn.metrics', 'sklearn.ensemble',
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'sklearn.experimental', 'sklearn.cluster',
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'sklearn.feature_extraction', 'sklearn.__check_build',
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'sklearn.semi_supervised', 'sklearn.gaussian_process',
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'sklearn.compose', 'sklearn.datasets', 'sklearn.externals',
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'sklearn.linear_model', 'sklearn.impute', 'sklearn.utils',
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'sklearn.covariance', 'sklearn.neural_network',
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'sklearn.feature_selection', 'sklearn.inspection', 'sklearn.svm',
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'sklearn.manifold', 'sklearn.mixture', 'sklearn.preprocessing',
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'sklearn.model_selection', 'sklearn._build_utils',
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'sklearn.decomposition', 'sklearn.cross_decomposition',
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'sklearn.neighbors', 'sklearn.metrics.cluster',
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'sklearn.ensemble._hist_gradient_boosting'
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]
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version('0.21.2', sha256='0aafc312a55ebf58073151b9308761a5fcfa45b7f7730cea4b1f066f824c72db')
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version('0.21.1', sha256='228d0611e69e5250946f8cd7bbefec75347950f0ca426d0c518db8f06583f660')
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version('0.20.2', sha256='bc5bc7c7ee2572a1edcb51698a6caf11fae554194aaab9a38105d9ec419f29e6')
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version('0.20.0', sha256='97d1d971f8ec257011e64b7d655df68081dd3097322690afa1a71a1d755f8c18')
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version('0.19.1', 'b67143988c108862735a96cf2b1e827a')
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version('0.18.1', '6b0ff1eaa5010043895dd63d1e3c60c9')
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version('0.15.2', 'd9822ad0238e17b382a3c756ea94fe0d')
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version('0.16.1', '363ddda501e3b6b61726aa40b8dbdb7e')
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version('0.17.1', 'a2f8b877e6d99b1ed737144f5a478dfc')
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version('0.13.1', 'acba398e1d46274b8470f40d0926e6a4')
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depends_on('python@2.6:2.8,3.3:', when='@:0.19')
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depends_on('python@2.7:2.8,3.4:', when='@0.20.0:0.20.999')
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depends_on('python@3.5:', when='@0.21:')
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depends_on('py-numpy@1.6.1:', type=('build', 'run'), when='@:0.19')
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depends_on('py-numpy@1.8.2:', type=('build', 'run'), when='@0.20.0:0.20.999')
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depends_on('py-numpy@1.11.0:', type=('build', 'run'), when='@0.21:')
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depends_on('py-scipy@0.9:', type=('build', 'run'), when='@:0.19')
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depends_on('py-scipy@0.13.3:', type=('build', 'run'), when='@0.20.0:0.20.999')
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depends_on('py-scipy@0.17.0:', type=('build', 'run'), when='@0.21:')
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depends_on('py-joblib@0.11:', type=('build', 'run'))
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depends_on('py-cython@0.23:', type='build')
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depends_on('py-cython@0.28.5:', type='build', when='@0.21:')
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depends_on('py-pytest@3.3.0:', type='test')
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depends_on('py-pandas', type='test')
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depends_on('py-setuptools', type='build')
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# Technically not correct, but currently no way to check if we
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# are using Apple Clang or not.
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depends_on('llvm-openmp', when='@0.21: %clang platform=darwin')
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def setup_environment(self, spack_env, run_env):
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# https://scikit-learn.org/stable/developers/advanced_installation.html#mac-osx
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if self.spec.satisfies('@0.21: %clang platform=darwin'):
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spack_env.append_flags(
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'CPPFLAGS', '-Xpreprocessor -fopenmp')
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spack_env.append_flags(
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'CFLAGS', self.spec['llvm-openmp'].headers.include_flags)
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spack_env.append_flags(
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'CXXFLAGS',
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self.spec['llvm-openmp'].headers.include_flags)
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spack_env.append_flags(
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'LDFLAGS', self.spec['llvm-openmp'].libs.ld_flags)
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spack_env.append_flags(
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'DYLD_LIBRARY_PATH',
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self.spec['llvm-openmp'].libs.directories[0])
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run_env.append_flags(
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'DYLD_LIBRARY_PATH',
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self.spec['llvm-openmp'].libs.directories[0])
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def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
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if self.spec.satisfies('@0.21: %clang platform=darwin'):
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spack_env.append_flags(
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'DYLD_LIBRARY_PATH',
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self.spec['llvm-openmp'].libs.directories[0])
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def install_test(self):
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# https://scikit-learn.org/stable/developers/advanced_installation.html#testing
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with working_dir('spack-test', create=True):
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pytest = which('pytest')
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pytest(join_path(self.prefix, site_packages_dir, 'sklearn'))
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