5df10c04cd
The number of commit characters in patch files fetched from GitHub can change, so we should use `full_index=1` to enforce full commit hashes (and a stable patch `sha256`). Similarly, URLs for branches like `master` don't give us stable patch files, because branches are moving targets. Use specific tags or commits for those. - [x] update all github patch URLs to use `full_index=1` - [x] don't use `master` or other branches for patches - [x] add an audit check and a test for `?full_index=1` Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
598 lines
26 KiB
Python
598 lines
26 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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from spack import *
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from spack.pkg.builtin.boost import Boost
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class Dealii(CMakePackage, CudaPackage):
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"""C++ software library providing well-documented tools to build finite
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element codes for a broad variety of PDEs."""
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homepage = "https://www.dealii.org"
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url = "https://github.com/dealii/dealii/releases/download/v8.4.1/dealii-8.4.1.tar.gz"
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git = "https://github.com/dealii/dealii.git"
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maintainers = ['jppelteret', 'luca-heltai']
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# Don't add RPATHs to this package for the full build DAG.
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# only add for immediate deps.
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transitive_rpaths = False
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generator = 'Ninja'
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version('master', branch='master')
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version('9.3.3', sha256='5dfb59174b341589e92b434398a1b7cc11ad053ce2315cf673f5efc5ba271a29')
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version('9.3.2', sha256='5341d76bfd75d3402fc6907a875513efb5fe8a8b99af688d94443c492d5713e8')
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version('9.3.1', sha256='a62f4676ab2dc029892251d141427fb75cbb83cddd606019f615d0dde9c61ab8')
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version('9.3.0', sha256='aef8c7a87510ce827dfae3bdd4ed7bff82004dc09f96fa7a65b2554f2839b931')
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version('9.2.0', sha256='d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a')
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version('9.1.1', sha256='fc5b483f7fe58dfeb52d05054011280f115498e337af3e085bf272fd1fd81276')
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version('9.1.0', sha256='5b070112403f8afbb72345c1bb24d2a38d11ce58891217e353aab97957a04600')
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version('9.0.1', sha256='df2f0d666f2224be07e3741c0e8e02132fd67ea4579cd16a2429f7416146ee64')
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version('9.0.0', sha256='c918dc5c1a31d62f6eea7b524dcc81c6d00b3c378d4ed6965a708ab548944f08')
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version('8.5.1', sha256='d33e812c21a51f7e5e3d3e6af86aec343155650b611d61c1891fbc3cabce09ae')
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version('8.5.0', sha256='e6913ff6f184d16bc2598c1ba31f879535b72b6dff043e15aef048043ff1d779')
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version('8.4.2', sha256='ec7c00fadc9d298d1a0d16c08fb26818868410a9622c59ba624096872f3058e4')
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version('8.4.1', sha256='00a0e92d069cdafd216816f1aff460f7dbd48744b0d9e0da193287ebf7d6b3ad')
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version('8.4.0', sha256='36a20e097a03f17b557e11aad1400af8c6252d25f7feca40b611d5fc16d71990')
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version('8.3.0', sha256='4ddf72632eb501e1c814e299f32fc04fd680d6fda9daff58be4209e400e41779')
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version('8.2.1', sha256='d75674e45fe63cd9fa294460fe45228904d51a68f744dbb99cd7b60720f3b2a0')
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version('8.1.0', sha256='d666bbda2a17b41b80221d7029468246f2658051b8c00d9c5907cd6434c4df99')
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# Configuration variants
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variant('build_type', default='DebugRelease',
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description='The build type to build',
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values=('Debug', 'Release', 'DebugRelease'))
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variant('cxxstd', default='default', multi=False,
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description='Compile using the specified C++ standard',
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values=('default', '11', '14', '17'))
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variant('doc', default=False,
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description='Compile with documentation')
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variant('examples', default=True,
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description='Compile tutorial programs')
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variant('int64', default=False,
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description='Compile with 64 bit indices support')
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variant('mpi', default=True,
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description='Compile with MPI')
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variant('optflags', default=False,
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description='Compile using additional optimization flags')
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variant('python', default=False,
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description='Compile with Python bindings')
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# Package variants
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variant('assimp', default=True,
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description='Compile with Assimp')
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variant('arborx', default=True,
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description='Compile with Arborx support')
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variant('arpack', default=True,
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description='Compile with Arpack and PArpack (only with MPI)')
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variant('adol-c', default=True,
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description='Compile with ADOL-C')
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variant('ginkgo', default=True,
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description='Compile with Ginkgo')
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variant('gmsh', default=True,
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description='Compile with GMSH')
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variant('gsl', default=True,
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description='Compile with GSL')
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variant('hdf5', default=True,
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description='Compile with HDF5 (only with MPI)')
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variant('metis', default=True,
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description='Compile with Metis')
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variant('muparser', default=True,
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description='Compile with muParser')
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variant('nanoflann', default=False,
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description='Compile with Nanoflann')
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variant('netcdf', default=False,
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description='Compile with Netcdf (only with MPI)')
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variant('oce', default=True,
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description='Compile with OCE')
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variant('p4est', default=True,
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description='Compile with P4est (only with MPI)')
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variant('petsc', default=True,
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description='Compile with Petsc (only with MPI)')
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variant('scalapack', default=True,
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description='Compile with ScaLAPACK (only with MPI)')
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variant('sundials', default=True,
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description='Compile with Sundials')
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variant('slepc', default=True,
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description='Compile with Slepc (only with Petsc and MPI)')
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variant('symengine', default=True,
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description='Compile with SymEngine')
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variant('simplex', default=True,
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description='Compile with Simplex support')
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# TODO @9.3: enable by default, when we know what to do
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# variant('taskflow', default=False,
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# description='Compile with multi-threading via Taskflow')
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# TODO @9.3: disable by default
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# (NB: only if tbb is removed in 9.3, as planned!!!)
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variant('threads', default=True,
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description='Compile with multi-threading via TBB')
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variant('trilinos', default=True,
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description='Compile with Trilinos (only with MPI)')
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# Required dependencies: Light version
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depends_on('blas')
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# Boost 1.58 is blacklisted, require at least 1.59, see
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# https://github.com/dealii/dealii/issues/1591
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# There are issues with 1.65.1 and 1.65.0:
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# https://github.com/dealii/dealii/issues/5262
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# we take the patch from https://github.com/boostorg/serialization/pull/79
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# more precisely its variation https://github.com/dealii/dealii/pull/5572#issuecomment-349742019
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# 1.68.0 has issues with serialization https://github.com/dealii/dealii/issues/7074
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# adopt https://github.com/boostorg/serialization/pull/105 as a fix
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depends_on('boost@1.59.0:1.63,1.65.1,1.67.0:+thread+system+serialization+iostreams',
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patches=[patch('boost_1.65.1_singleton.patch',
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level=1,
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when='@1.65.1'),
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patch('boost_1.68.0.patch',
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level=1,
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when='@1.68.0'),
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],
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when='~python')
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depends_on('boost@1.59.0:1.63,1.65.1,1.67.0:+thread+system+serialization+iostreams+python',
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patches=[patch('boost_1.65.1_singleton.patch',
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level=1,
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when='@1.65.1'),
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patch('boost_1.68.0.patch',
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level=1,
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when='@1.68.0'),
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],
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when='+python')
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# boost@1.77.0 triggers build errors in dealii@9.3.1
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depends_on('boost@:1.76', when='@:9.3')
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# The std::auto_ptr is removed in the C++ 17 standard.
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# See https://github.com/dealii/dealii/issues/4662
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# and related topics discussed for other software libraries.
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depends_on('boost cxxstd=11', when='cxxstd=11')
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depends_on('boost cxxstd=14', when='cxxstd=14')
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depends_on('boost cxxstd=17', when='cxxstd=17')
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depends_on('bzip2', when='@:8')
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on('lapack')
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depends_on('ninja', type='build')
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depends_on('suite-sparse')
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depends_on('zlib')
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# Optional dependencies: Configuration
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depends_on('cuda@8:', when='+cuda')
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depends_on('cmake@3.9:', when='+cuda', type='build')
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# Older version of deal.II do not build with Cmake 3.10, see
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# https://github.com/dealii/dealii/issues/5510
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depends_on('cmake@:3.9', when='@:8', type='build')
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depends_on('mpi', when='+mpi')
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depends_on('python', when='@8.5.0:+python')
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# Optional dependencies: Packages
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depends_on('adol-c@2.6.4:', when='@9.0:+adol-c')
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depends_on('arborx', when='@9.3:+arborx')
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depends_on('arborx+trilinos', when='@9.3:+arborx+trilinos')
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depends_on('arpack-ng+mpi', when='+arpack+mpi')
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depends_on('assimp', when='@9.0:+assimp')
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depends_on('doxygen+graphviz', when='+doc')
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depends_on('graphviz', when='+doc')
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depends_on('ginkgo', when='@9.1:+ginkgo')
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depends_on('ginkgo@1.4.0:', when='@9.4:+ginkgo')
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depends_on('gmsh+tetgen+netgen+oce', when='@9.0:+gmsh', type=('build', 'run'))
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depends_on('gsl', when='@8.5.0:+gsl')
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# TODO: next line fixes concretization with petsc
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depends_on('hdf5+mpi+hl+fortran', when='+hdf5+mpi+petsc')
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depends_on('hdf5+mpi+hl', when='+hdf5+mpi~petsc')
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# TODO: concretizer bug. The two lines mimic what comes from PETSc
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# but we should not need it
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depends_on('metis@5:+int64', when='+metis+int64')
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depends_on('metis@5:~int64', when='+metis~int64')
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depends_on('muparser', when='+muparser')
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# Nanoflann support has been removed after 9.2.0
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depends_on('nanoflann', when='@9.0:9.2+nanoflann')
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depends_on('netcdf-c+mpi', when='+netcdf+mpi')
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depends_on('netcdf-cxx', when='+netcdf+mpi')
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depends_on('oce', when='+oce')
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depends_on('p4est', when='+p4est+mpi')
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depends_on('petsc+mpi~int64', when='+petsc+mpi~int64')
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depends_on('petsc+mpi+int64', when='+petsc+mpi+int64')
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depends_on('petsc@:3.6.4', when='@:8.4.1+petsc+mpi')
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depends_on('scalapack', when='@9.0:+scalapack')
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depends_on('slepc', when='+slepc+petsc+mpi')
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depends_on('slepc@:3.6.3', when='@:8.4.1+slepc+petsc+mpi')
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depends_on('slepc~arpack', when='+slepc+petsc+mpi+int64')
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depends_on('sundials@:3~pthread', when='@9.0:9.2+sundials')
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depends_on('sundials@5:5.8', when='@9.3:9.3.3+sundials')
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depends_on('sundials@5:', when='@9.3.4:+sundials')
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# depends_on('taskflow', when='@9.3:+taskflow')
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depends_on('trilinos gotype=int', when='+trilinos@12.18.1:')
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# TODO: next line fixes concretization with trilinos and adol-c
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depends_on('trilinos~exodus', when='@9.0:+adol-c+trilinos')
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# Both Trilinos and SymEngine bundle the Teuchos RCP library.
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# This leads to conflicts between macros defined in the included
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# headers when they are not compiled in the same mode.
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# See https://github.com/symengine/symengine/issues/1516
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# TODO: uncomment when the following is fixed
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# https://github.com/spack/spack/issues/11160
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# depends_on("symengine@0.4: build_type=Release", when="@9.1:+symengine+trilinos^trilinos~debug") # NOQA: ignore=E501
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# depends_on("symengine@0.4: build_type=Debug", when="@9.1:+symengine+trilinos^trilinos+debug") # NOQA: ignore=E501
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depends_on('symengine@0.4:', when='@9.1:+symengine')
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depends_on('symengine@0.6:', when='@9.2:+symengine')
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depends_on('tbb', when='+threads')
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# do not require +rol to make concretization of xsdk possible
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado', when='+trilinos')
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depends_on('trilinos~hypre', when='+trilinos+int64')
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# TODO: temporary disable Tpetra when using CUDA due to
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# namespace "Kokkos::Impl" has no member "cuda_abort"
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depends_on('trilinos@master+rol~amesos2~ifpack2~intrepid2~kokkos~tpetra~zoltan2', when='+trilinos+cuda')
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# Explicitly provide a destructor in BlockVector,
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# otherwise deal.II may fail to build with Intel compilers.
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patch('https://github.com/dealii/dealii/commit/a89d90f9993ee9ad39e492af466b3595c06c3e25.patch?full_index=1',
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sha256='72304bc6c3fb4549cf53ed533a00311d12827d48817e2038efd3a8ef6c43d149',
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when='@9.0.1')
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# https://github.com/dealii/dealii/pull/7935
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patch('https://github.com/dealii/dealii/commit/f8de8c5c28c715717bf8a086e94f071e0fe9deab.patch?full_index=1',
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sha256='4aba56b01d816ca950b1625f436840df253f145650e3a3eba51e7f2696ec7dc0',
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when='@9.0.1 ^boost@1.70.0:')
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# Fix TBB version check
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# https://github.com/dealii/dealii/pull/9208
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patch('https://github.com/dealii/dealii/commit/80b13fe5a2eaefc77fa8c9266566fa8a2de91edf.patch?full_index=1',
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sha256='3da530766050a0cea80106684347055bdb78528a1869ce99e8fbf8fc83074fd0',
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when='@9.0.0:9.1.1')
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# Explicitly include a boost header, otherwise deal.II fails to compile
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# https://github.com/dealii/dealii/pull/11438
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patch('https://github.com/dealii/dealii/commit/3b815e21c4bfd82c792ba80e4d90314c8bb9edc9.patch?full_index=1',
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sha256='90ae9ddefe77fffd297bba6b070ab68d07306d4ef525ee994e8c49cef68f76f3',
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when='@9.2.0 ^boost@1.72.0:')
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# Check for sufficiently modern versions
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conflicts('cxxstd=11', when='@9.3:')
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# Interfaces added in 8.5.0:
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for p in ['gsl', 'python']:
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conflicts('+{0}'.format(p), when='@:8.4.2',
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msg='The interface to {0} is supported from version 8.5.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# Interfaces added in 9.0.0:
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for p in ['assimp', 'gmsh', 'nanoflann', 'scalapack', 'sundials',
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'adol-c']:
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conflicts('+{0}'.format(p), when='@:8.5.1',
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msg='The interface to {0} is supported from version 9.0.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# interfaces added in 9.1.0:
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for p in ['ginkgo', 'symengine']:
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conflicts('+{0}'.format(p), when='@:9.0',
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msg='The interface to {0} is supported from version 9.1.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# interfaces added in 9.3.0:
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for p in ['simplex', 'arborx']: # , 'taskflow']:
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conflicts('+{0}'.format(p), when='@:9.2',
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msg='The interface to {0} is supported from version 9.3.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# Interfaces removed in 9.3.0:
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conflicts('+nanoflann', when='@9.3.0:',
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msg='The interface to Nanoflann was removed from version 9.3.0. '
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'Please explicitly disable this variant via ~nanoflann')
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# Check that the combination of variants makes sense
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# 64-bit BLAS:
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for p in ['openblas', 'intel-mkl', 'intel-parallel-studio+mkl']:
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conflicts('^{0}+ilp64'.format(p), when='@:8.5.1',
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msg='64bit BLAS is only supported from 9.0.0')
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# MPI requirements:
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for p in ['arpack', 'hdf5', 'netcdf', 'p4est', 'petsc', 'scalapack',
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'slepc', 'trilinos']:
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conflicts('+{0}'.format(p), when='~mpi',
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msg='To enable {0} it is necessary to build deal.II with '
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'MPI support enabled.'.format(p))
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# Optional dependencies:
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conflicts('+adol-c', when='^netcdf',
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msg='Symbol clash between the ADOL-C library and '
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'Netcdf.')
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conflicts('+adol-c', when='^trilinos+chaco',
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msg='Symbol clash between the ADOL-C library and '
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'Trilinos SEACAS Chaco.')
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conflicts('+adol-c', when='^trilinos+exodus',
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msg='Symbol clash between the ADOL-C library and '
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'Trilinos Netcdf.')
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conflicts('+slepc', when='~petsc',
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msg='It is not possible to enable slepc interfaces '
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'without petsc.')
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def cmake_args(self):
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spec = self.spec
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options = []
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# Release flags
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cxx_flags_release = []
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# Debug and release flags
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cxx_flags = []
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# Set directory structure:
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if spec.satisfies('@:8.2.1'):
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options.append(
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self.define('DEAL_II_COMPONENT_COMPAT_FILES', False)
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)
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else:
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options.extend([
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self.define(
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'DEAL_II_EXAMPLES_RELDIR', 'share/deal.II/examples'
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),
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self.define('DEAL_II_DOCREADME_RELDIR', 'share/deal.II/'),
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self.define('DEAL_II_DOCHTML_RELDIR', 'share/deal.II/doc')
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])
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# Required dependencies
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lapack_blas_libs = spec['lapack'].libs + spec['blas'].libs
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lapack_blas_headers = spec['lapack'].headers + spec['blas'].headers
|
|
options.extend([
|
|
self.define('BOOST_DIR', spec['boost'].prefix),
|
|
# CMake's FindBlas/Lapack may pickup system's blas/lapack instead
|
|
# of Spack's. Be more specific to avoid this.
|
|
# Note that both lapack and blas are provided in -DLAPACK_XYZ.
|
|
self.define('LAPACK_FOUND', True),
|
|
self.define(
|
|
'LAPACK_INCLUDE_DIRS',
|
|
';'.join(lapack_blas_headers.directories)
|
|
),
|
|
self.define('LAPACK_LIBRARIES', lapack_blas_libs.joined(';')),
|
|
self.define('UMFPACK_DIR', spec['suite-sparse'].prefix),
|
|
self.define('ZLIB_DIR', spec['zlib'].prefix),
|
|
self.define('DEAL_II_ALLOW_BUNDLED', False)
|
|
])
|
|
|
|
if spec.satisfies('@:8'):
|
|
options.extend([
|
|
# Cmake may still pick up system's bzip2, fix this:
|
|
self.define('BZIP2_FOUND', True),
|
|
self.define(
|
|
'BZIP2_INCLUDE_DIRS', spec['bzip2'].prefix.include
|
|
),
|
|
self.define('BZIP2_LIBRARIES', spec['bzip2'].libs.joined(';'))
|
|
])
|
|
|
|
# Doxygen documentation
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_COMPONENT_DOCUMENTATION', 'doc'
|
|
))
|
|
|
|
# Examples / tutorial programs
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_COMPONENT_EXAMPLES', 'examples'
|
|
))
|
|
|
|
# Enforce the specified C++ standard
|
|
if spec.variants['cxxstd'].value != 'default':
|
|
cxxstd = spec.variants['cxxstd'].value
|
|
options.append(
|
|
self.define('DEAL_II_WITH_CXX{0}'.format(cxxstd), True)
|
|
)
|
|
|
|
# Performance
|
|
# Set recommended flags for maximum (matrix-free) performance, see
|
|
# https://groups.google.com/forum/?fromgroups#!topic/dealii/3Yjy8CBIrgU
|
|
if spec.satisfies('%gcc'):
|
|
cxx_flags_release.extend(['-O3'])
|
|
elif spec.satisfies('%intel'):
|
|
cxx_flags_release.extend(['-O3'])
|
|
elif spec.satisfies('%clang') or spec.satisfies('%apple-clang'):
|
|
cxx_flags_release.extend(['-O3', '-ffp-contract=fast'])
|
|
|
|
# 64 bit indices
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_64BIT_INDICES', 'int64'
|
|
))
|
|
|
|
if (spec.satisfies('^openblas+ilp64') or
|
|
spec.satisfies('^intel-mkl+ilp64') or
|
|
spec.satisfies('^intel-parallel-studio+mkl+ilp64')):
|
|
options.append(
|
|
self.define('LAPACK_WITH_64BIT_BLAS_INDICES', True)
|
|
)
|
|
|
|
# CUDA
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_CUDA', 'cuda'
|
|
))
|
|
if '+cuda' in spec:
|
|
if not spec.satisfies('^cuda@9:'):
|
|
options.append('-DDEAL_II_WITH_CXX14=OFF')
|
|
cuda_arch = spec.variants['cuda_arch'].value
|
|
if cuda_arch != 'none':
|
|
if len(cuda_arch) > 1:
|
|
raise InstallError(
|
|
'deal.II only supports compilation for a single GPU!'
|
|
)
|
|
flags = '-arch=sm_{0}'.format(cuda_arch[0])
|
|
# TODO: there are some compiler errors in dealii
|
|
# with: flags = ' '.join(self.cuda_flags(cuda_arch))
|
|
# Stick with -arch=sm_xy for now.
|
|
options.append(
|
|
self.define('DEAL_II_CUDA_FLAGS', flags)
|
|
)
|
|
|
|
# MPI
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_MPI', 'mpi'
|
|
))
|
|
if '+mpi' in spec:
|
|
options.extend([
|
|
self.define('CMAKE_C_COMPILER', spec['mpi'].mpicc),
|
|
self.define('CMAKE_CXX_COMPILER', spec['mpi'].mpicxx),
|
|
self.define('CMAKE_Fortran_COMPILER', spec['mpi'].mpifc),
|
|
self.define('MPI_C_COMPILER', spec['mpi'].mpicc),
|
|
self.define('MPI_CXX_COMPILER', spec['mpi'].mpicxx),
|
|
self.define('MPI_Fortran_COMPILER', spec['mpi'].mpifc)
|
|
])
|
|
if '+cuda' in spec:
|
|
options.extend([
|
|
self.define('DEAL_II_MPI_WITH_CUDA_SUPPORT',
|
|
spec['mpi'].satisfies('+cuda')),
|
|
self.define('CUDA_HOST_COMPILER', spec['mpi'].mpicxx)
|
|
])
|
|
|
|
# Python bindings
|
|
if spec.satisfies('@8.5.0:'):
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_COMPONENT_PYTHON_BINDINGS', 'python'
|
|
))
|
|
if '+python' in spec:
|
|
python_exe = spec['python'].command.path
|
|
python_library = spec['python'].libs[0]
|
|
python_include = spec['python'].headers.directories[0]
|
|
options.extend([
|
|
self.define('PYTHON_EXECUTABLE', python_exe),
|
|
self.define('PYTHON_INCLUDE_DIR', python_include),
|
|
self.define('PYTHON_LIBRARY', python_library)
|
|
])
|
|
|
|
# Simplex support
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_SIMPLEX_SUPPORT', 'simplex'
|
|
))
|
|
|
|
# Threading
|
|
if spec.satisfies('@9.3.0:'):
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_TBB', 'threads'
|
|
))
|
|
else:
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_THREADS', 'threads'
|
|
))
|
|
if '+threads' in spec:
|
|
if (spec.satisfies('^intel-parallel-studio+tbb')):
|
|
# deal.II/cmake will have hard time picking up TBB from Intel.
|
|
tbb_ver = '.'.join(('%s' % spec['tbb'].version).split('.')[1:])
|
|
options.extend([
|
|
self.define('TBB_FOUND', True),
|
|
self.define('TBB_VERSION', tbb_ver),
|
|
self.define(
|
|
'TBB_INCLUDE_DIRS',
|
|
';'.join(spec['tbb'].headers.directories)
|
|
),
|
|
self.define('TBB_LIBRARIES', spec['tbb'].libs.joined(';'))
|
|
])
|
|
else:
|
|
options.append(
|
|
self.define('TBB_DIR', spec['tbb'].prefix)
|
|
)
|
|
|
|
# Optional dependencies for which library names are the same as CMake
|
|
# variables:
|
|
for library in (
|
|
'gsl', 'hdf5', 'p4est', 'petsc', 'slepc', 'trilinos', 'metis',
|
|
'sundials', 'nanoflann', 'assimp', 'gmsh', 'muparser',
|
|
'symengine', 'ginkgo', 'arborx'): # 'taskflow'):
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_{0}'.format(library.upper()), library
|
|
))
|
|
if ('+' + library) in spec:
|
|
options.append(self.define(
|
|
'{0}_DIR'.format(library.upper()), spec[library].prefix
|
|
))
|
|
|
|
# Optional dependencies that do not fit the above pattern:
|
|
# ADOL-C
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_ADOLC', 'adol-c'
|
|
))
|
|
if '+adol-c' in spec:
|
|
options.append(
|
|
self.define('ADOLC_DIR', spec['adol-c'].prefix)
|
|
)
|
|
|
|
# ARPACK
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_ARPACK', 'arpack'
|
|
))
|
|
if '+arpack' in spec and '+mpi' in spec:
|
|
options.extend([
|
|
self.define('ARPACK_DIR', spec['arpack-ng'].prefix),
|
|
self.define('DEAL_II_ARPACK_WITH_PARPACK', True)
|
|
])
|
|
|
|
# NetCDF
|
|
# since Netcdf is spread among two, need to do it by hand:
|
|
if '+netcdf' in spec and '+mpi' in spec:
|
|
netcdf_libs = spec['netcdf-cxx'].libs + spec['netcdf-c'].libs
|
|
options.extend([
|
|
self.define('NETCDF_FOUND', True),
|
|
self.define('NETCDF_INCLUDE_DIRS', '{0};{1}'.format(
|
|
spec['netcdf-cxx'].prefix.include,
|
|
spec['netcdf-c'].prefix.include
|
|
)),
|
|
self.define('NETCDF_LIBRARIES', netcdf_libs.joined(';'))
|
|
])
|
|
else:
|
|
options.append(
|
|
self.define('DEAL_II_WITH_NETCDF', False)
|
|
)
|
|
|
|
# ScaLAPACK
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_SCALAPACK', 'scalapack'
|
|
))
|
|
if '+scalapack' in spec:
|
|
scalapack_libs = spec['scalapack'].libs
|
|
options.extend([
|
|
self.define('SCALAPACK_FOUND', True),
|
|
self.define(
|
|
'SCALAPACK_INCLUDE_DIRS', spec['scalapack'].prefix.include
|
|
),
|
|
self.define('SCALAPACK_LIBRARIES', scalapack_libs.joined(';'))
|
|
])
|
|
|
|
# Open Cascade
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_OPENCASCADE', 'oce'
|
|
))
|
|
if '+oce' in spec:
|
|
options.append(
|
|
self.define('OPENCASCADE_DIR', spec['oce'].prefix)
|
|
)
|
|
|
|
# As a final step, collect CXX flags that may have been
|
|
# added anywhere above:
|
|
if len(cxx_flags_release) > 0 and '+optflags' in spec:
|
|
options.extend([
|
|
self.define(
|
|
'CMAKE_CXX_FLAGS_RELEASE', ' '.join(cxx_flags_release)
|
|
),
|
|
self.define('CMAKE_CXX_FLAGS', ' '.join(cxx_flags))
|
|
])
|
|
|
|
# Add flags for machine vectorization, used when tutorials
|
|
# and user code is built.
|
|
# See https://github.com/dealii/dealii/issues/9164
|
|
options.append(
|
|
self.define('DEAL_II_CXX_FLAGS', os.environ['SPACK_TARGET_ARGS'])
|
|
)
|
|
|
|
return options
|
|
|
|
def setup_run_environment(self, env):
|
|
env.set('DEAL_II_DIR', self.prefix)
|
|
|
|
def setup_build_environment(self, env):
|
|
spec = self.spec
|
|
if '+cuda' in spec and '+mpi' in spec:
|
|
env.set('CUDAHOSTCXX', spec['mpi'].mpicxx)
|