5425a3dad4
- in many files, regular strings were used in places where raw strings should've been used. - convert these to raw strings and get rid of new flake8 errors
31 lines
1.2 KiB
Python
31 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PacbioDextractor(MakefilePackage):
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"""The Dextractor and Compression Command Library. This is a special
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fork required by some pacbio utilities."""
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homepage = "https://github.com/PacificBiosciences/DEXTRACTOR"
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git = "https://github.com/PacificBiosciences/DEXTRACTOR.git"
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version('2016-08-09', commit='89726800346d0bed15d98dcc577f4c7733aab4b1')
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depends_on('hdf5')
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depends_on('gmake', type='build')
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def edit(self, spec, prefix):
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mkdirp(prefix.bin)
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makefile = FileFilter('Makefile')
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makefile.filter(r'PATH_HDF5\s*=\s*/sw/apps/hdf5/current',
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'PATH_HDF5 = ' + spec['hdf5'].prefix)
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makefile.filter(r'PATH_HDF5\*s=\s*/usr/local/hdf5', '')
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makefile.filter(r'DEST_DIR\s*=\s*~/bin', 'DEST_DIR = ' + prefix.bin)
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gmf = FileFilter('GNUmakefile')
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gmf.filter(r'rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin',
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'cp ${ALL} ' + prefix.bin)
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