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spack/var/spack/repos/builtin/packages/openpmd-api/package.py

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Python
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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class OpenpmdApi(CMakePackage):
"""C++ & Python API for Scientific I/O"""
homepage = "https://www.openPMD.org"
url = "https://github.com/openPMD/openPMD-api/archive/0.16.0.tar.gz"
git = "https://github.com/openPMD/openPMD-api.git"
maintainers("ax3l", "franzpoeschel")
tags = ["e4s"]
license("LGPL-3.0-only")
# C++17 up until here
version("develop", branch="dev")
version("0.16.0", sha256="b52222a4ab2511f9e3f6e21af222f57ab4fb6228623024fc5d982066333e104f")
version("0.15.2", sha256="fbe3b356fe6f4589c659027c8056844692c62382e3ec53b953bed1c87e58ba13")
version("0.15.1", sha256="0e81652152391ba4d2b62cfac95238b11233a4f89ff45e1fcffcc7bcd79dabe1")
version("0.15.0", sha256="290e3a3c5814204ea6527d53423bfacf7a8dc490713227c9e0eaa3abf4756177")
# C++14 up until here
version("0.14.5", sha256="e3f509098e75014394877e0dc91f833e57ced5552b110c7339a69e9dbe49bf62")
version("0.14.4", sha256="42b7bcd043e772d63f0fe0e5e70da411f001db10096d5b8be797ffc88e786379")
version("0.14.3", sha256="57282455e0fb1873b4def1894fadadd6425dfc8349eac7fcc68daf677c48b7ce")
version("0.14.2", sha256="25c6b4bcd0ae1ba668b633b8514e66c402da54901c26861fc754fca55717c836")
version("0.14.1", sha256="172fd1d785627d01c77f1170adc5a18bd8a6302e804d0f271dc0d616a5156791")
version("0.14.0", sha256="7bb561c1a6f54e9a6a1b56aaf1d4d098bbe290d204f84ebe5a6f11b3cab2be6e")
version("0.13.4", sha256="46c013be5cda670f21969675ce839315d4f5ada0406a6546a91ec3441402cf5e")
version("0.13.3", sha256="4b8f84bd89cd540c73ffe8c21085970453cb7f0e4f125f11a4e288433f64b58c")
version("0.13.2", sha256="2e5170d41bb7b2c0608ec833eee7f9adf8175b46734743f6e46dcce6f6685fb0")
version("0.13.1", sha256="81ff79419982eb1b0865d1736f73f950f5d4c356d3c78200ceeab7f54dc07fd7")
version("0.13.0", sha256="97c2e43d80ee5c5288f278bd54f0dcb40e7f48a575b278fcef9660214b779bb0")
# C++11 up until here
version("0.12.0", tag="0.12.0-alpha", commit="23be484dd2570b5277779eafcc5f1eb70c6d98f2")
version("0.11.1", tag="0.11.1-alpha", commit="c40292aafbf564807710424d106304f9670a8304")
depends_on("c", type="build")
depends_on("cxx", type="build")
variant("shared", default=True, description="Build a shared version of the library")
variant("mpi", default=True, description="Enable parallel I/O")
variant("hdf5", default=True, description="Enable HDF5 support")
variant("adios1", default=False, description="Enable ADIOS1 support", when="@:0.15")
variant("adios2", default=True, description="Enable ADIOS2 support")
variant("python", default=False, description="Enable Python bindings")
depends_on("cmake@3.15.0:", type="build")
depends_on("cmake@3.22.0:", type="build", when="@0.16.0:")
depends_on("catch2@2.6.1:2", type="test")
depends_on("catch2@2.13.4:2", type="test", when="@0.14.0:")
depends_on("catch2@2.13.10:2", type="test", when="@0.15.0:")
depends_on("mpi@2.3:", when="+mpi") # might become MPI 3.0+
depends_on("nlohmann-json@3.9.1:")
depends_on("mpark-variant@1.4.0:", when="@:0.14") # pre C++17 releases
depends_on("toml11@3.7.1:3", when="@0.15")
depends_on("toml11@3.7.1:", when="@0.16:")
with when("+hdf5"):
depends_on("hdf5@1.8.13:")
depends_on("hdf5@1.8.13: ~mpi", when="~mpi")
depends_on("hdf5@1.8.13: +mpi", when="+mpi")
with when("+adios1"):
depends_on("adios@1.13.1: ~sz")
depends_on("adios@1.13.1: ~mpi ~sz", when="~mpi")
depends_on("adios@1.13.1: +mpi ~sz", when="+mpi")
with when("+adios2"):
depends_on("adios2@2.5.0:")
depends_on("adios2@2.6.0:", when="@0.12.0:")
depends_on("adios2@2.7.0:", when="@0.14.0:")
depends_on("adios2@2.5.0: ~mpi", when="~mpi")
depends_on("adios2@2.5.0: +mpi", when="+mpi")
with when("+python"):
depends_on("py-pybind11@2.6.2:", type="link")
depends_on("py-pybind11@2.13.0:", type="link", when="@0.16.0:")
depends_on("py-numpy@1.15.1:", type=["test", "run"])
depends_on("py-mpi4py@2.1.0:", when="+mpi", type=["test", "run"])
depends_on("python@3.7:", type=["link", "test", "run"])
depends_on("python@3.8:", when="@0.15.2:", type=["link", "test", "run"])
conflicts("^hdf5 api=v16", msg="openPMD-api requires HDF5 APIs for 1.8+")
# Fix breaking HDF5 1.12.0 API when build with legacy api options
# https://github.com/openPMD/openPMD-api/pull/1012
patch("hdf5-1.12.0.patch", when="@:0.13 +hdf5")
# CMake: Fix Python Install Directory
patch(
"https://github.com/openPMD/openPMD-api/pull/1393.patch?full_index=1",
sha256="b5cecbdbe16d98c0ba352fa861fcdf9d7c7cc85f21226fa03effa7d62a7cb276",
when="@0.15.0",
)
# macOS AppleClang12 Fixes
patch(
"https://github.com/openPMD/openPMD-api/pull/1395.patch?full_index=1",
sha256="791c0a9d1dc09226beb26e8e67824b3337d95f4a2a6e7e64637ea8f0d95eee61",
when="@0.15.0",
)
# forgot to bump version.hpp in 0.15.1
patch(
"https://github.com/openPMD/openPMD-api/pull/1417.patch?full_index=1",
sha256="c306483f1f94b308775a401c9cd67ee549fac6824a2264f5985499849fe210d5",
when="@0.15.1",
)
# fix superbuild control in 0.16.0
patch(
"https://github.com/openPMD/openPMD-api/pull/1678.patch?full_index=1",
sha256="e49fe79691bbb5aae2224d218f29801630d33f3a923c518f6bfb39ec22fd6a72",
when="@0.16.0",
)
extends("python", when="+python")
def cmake_args(self):
spec = self.spec
args = [
self.define_from_variant("BUILD_SHARED_LIBS", "shared"),
# variants
self.define_from_variant("openPMD_USE_MPI", "mpi"),
self.define_from_variant("openPMD_USE_HDF5", "hdf5"),
self.define_from_variant("openPMD_USE_ADIOS1", "adios1"),
self.define_from_variant("openPMD_USE_ADIOS2", "adios2"),
self.define_from_variant("openPMD_USE_PYTHON", "python"),
# tests and examples
self.define("BUILD_TESTING", self.run_tests),
self.define("BUILD_EXAMPLES", self.run_tests),
]
# switch internally shipped third-party libraries for spack
if spec.satisfies("+python"):
args.append(self.define("openPMD_USE_INTERNAL_PYBIND11", False))
args.append(self.define("openPMD_USE_INTERNAL_JSON", False))
if spec.satisfies("@:0.14"): # pre C++17 releases
args.append(self.define("openPMD_USE_INTERNAL_VARIANT", False))
if spec.satisfies("@0.15:"):
args.append(self.define("openPMD_USE_INTERNAL_TOML11", False))
if self.run_tests:
args.append(self.define("openPMD_USE_INTERNAL_CATCH", False))
return args
def setup_run_environment(self, env):
spec = self.spec
# pre-load dependent CMake-PUBLIC header-only libs
if spec.satisfies("@:0.14"): # pre C++17 releases
env.prepend_path("CMAKE_PREFIX_PATH", spec["mpark-variant"].prefix)
env.prepend_path("CPATH", spec["mpark-variant"].prefix.include)
# more deps searched in openPMDConfig.cmake
if spec.satisfies("+mpi"):
env.prepend_path("CMAKE_PREFIX_PATH", spec["mpi"].prefix)
if spec.satisfies("+adios1"):
env.prepend_path("CMAKE_PREFIX_PATH", spec["adios"].prefix)
env.prepend_path("PATH", spec["adios"].prefix.bin) # adios-config
if spec.satisfies("+adios2"):
env.prepend_path("CMAKE_PREFIX_PATH", spec["adios2"].prefix)
if spec.satisfies("+hdf5"):
env.prepend_path("CMAKE_PREFIX_PATH", spec["hdf5"].prefix)
def setup_dependent_build_environment(self, env, dependent_spec):
spec = self.spec
# pre-load dependent CMake-PUBLIC header-only libs
if spec.satisfies("@:0.14"): # pre C++17 releases
env.prepend_path("CMAKE_PREFIX_PATH", spec["mpark-variant"].prefix)
env.prepend_path("CPATH", spec["mpark-variant"].prefix.include)
def check(self):
"""CTest checks after the build phase"""
# note: for MPI-parallel tests, you can overwrite the standard CMake
# option -DMPIEXEC_EXECUTABLE=$(which jsrun) for jsrun or srun,
# etc.. Alternatively, you can also use -E <regex> to exclude
# parallel and MPI tests
with working_dir(self.build_directory):
# -j1 because individual tests create files that are read again by
# later tests
ctest("--output-on-failure", "-j1")
def test_run_openpmd_ls(self):
"""Test if openpmd-ls runs correctly"""
if self.spec.satisfies("@:0.11.0"):
raise SkipTest("Package must be installed as version 0.11.1 or later")
exe = which(join_path(self.prefix.bin, "openpmd-ls"))
out = exe(output=str.split, error=str.split)
assert str(self.spec.version) in out
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