..
abinit
abyss
accfft
ack
activeharmony
acts-core
ACTS package: add versions including 0.10.1 ( #11606 )
2019-06-18 11:00:02 -07:00
adept-utils
adios
adios2
ADIOS2: v2.4.0 ( #11904 )
2019-07-01 13:47:31 -04:00
adlbx
swift-t: New release packages for 1.4.3 ( #11684 )
2019-06-14 09:49:51 -05:00
adol-c
aegean
aida
alan
alan: new package at 2.1.1 ( #11593 )
2019-05-30 17:50:14 -05:00
albany
albert
alglib
allinea-reports
allpaths-lg
alquimia
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
alsa-lib
aluminum
Update lbann sw stack dependencies ( #10579 )
2019-02-13 11:19:15 -08:00
amber
New package: amber (starting at v16) ( #11619 )
2019-06-18 19:01:03 -07:00
amg
AMG: update version ( #11099 )
2019-04-03 11:11:06 -06:00
amg2013
aml
Adds the aml memory management library. ( #11590 )
2019-05-30 16:01:28 -05:00
amp
ampliconnoise
amrex
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
amrvis
andi
angsd
ant
antlr
ants
aoflagger
Aoflagger: a new package. ( #10840 )
2019-03-12 19:59:24 -05:00
aom
update aom package license
2019-05-10 04:37:56 +09:00
ape
aperture-photometry
apex
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx
New package: ArborX ( #11474 )
2019-06-18 19:14:05 -07:00
archer
argobots
Add margo package and add rc1 tag for argobots package ( #11281 )
2019-05-01 09:47:34 +09:00
argp-standalone
argtable
arlecore
arm-forge
arm-forge: add all available versions ( #11198 )
2019-05-03 08:14:25 -07:00
armadillo
arpack-ng
arpack-ng package: add version 3.7.0 ( #11041 )
2019-04-02 17:08:16 -07:00
arrow
py-arrow and arrow: add version 0.12.1 ( #11004 )
2019-04-02 17:00:04 -07:00
ascent
Remove version from py-mpi4py. ( #11587 )
2019-06-17 10:59:34 -04:00
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
Update remaining packages to use Stage.source_path ( #11662 )
2019-06-12 17:07:47 -07:00
assimp
astra
astral
astral: add 5.6.1 ( #11195 )
2019-04-17 09:32:50 -05:00
astyle
remove myself from maintainers of some packages ( #11319 )
2019-04-30 10:16:53 +02:00
at-spi2-atk
at-spi2-core
atk
atlas
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autofact
autofact: fix dependency ( #10818 )
2019-03-07 13:51:40 -06:00
autogen
automaded
automake
automake package: add version 1.13.4 ( #10662 )
2019-02-22 18:38:00 -06:00
awscli
awscli: new package ( #11796 )
2019-06-23 14:54:48 -04:00
axel
axl
bamdst
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
build env: simplify handling of parallel jobs ( #11524 )
2019-05-24 11:45:22 -07:00
bbcp
bbmap
bc
bcftools
bcl2fastq2
Update remaining packages to use Stage.source_path ( #11662 )
2019-06-12 17:07:47 -07:00
bdftopcf
bdw-gc
bear
beast1
beast1 package: add version 1.10.4, use url_for_version ( #11009 )
2019-03-26 15:39:42 -05:00
beast2
beast2 package: add version 2.5.2 ( #10723 )
2019-02-26 18:38:21 -06:00
beast-tracer
beast-tracer: new package at 1.7.1 ( #10652 )
2019-02-22 19:22:30 -06:00
bedops
bedops: avoid static linking with glibc ( #10456 )
2019-03-01 10:17:01 -06:00
bedtools2
beforelight
benchmark
Add Google Benchmark version 1.5.0 ( #11626 )
2019-06-04 22:53:07 -05:00
berkeley-db
bertini
bib2xhtml
bib2xhtml: replace version and change the download url ( #11837 )
2019-06-28 11:03:54 -07:00
bigreqsproto
binutils
bioawk
biobloom
biopieces
bismark
bison
bitmap
blasr
blasr-libcpp
blast2go
blast2go: new package at 5.2.5 ( #10725 )
2019-03-01 12:36:00 -06:00
blast-legacy
blast-legacy: new package at 2.2.26 ( #10610 )
2019-03-01 10:14:37 -06:00
blast-plus
blast-plus package: remove --with-64 on ARM. ( #11877 )
2019-06-28 10:11:04 -07:00
blat
blaze
blis
bliss
blitz
bmake
bmi
add BMI package ( #11310 )
2019-05-03 09:11:31 +02:00
bml
bml: add v1.3.1 ( #11856 )
2019-06-27 10:57:09 -06:00
bohrium
bolt
bookleaf-cpp
boost
boost: add variant for symbol visibility ( #11801 )
2019-06-20 17:43:25 -04:00
boostmplcartesianproduct
bowtie
bowtie: Add missing zlib dependency ( #10984 )
2019-03-22 11:17:16 +01:00
bowtie2
added checksum for new bowtie2 version ( #10930 )
2019-03-19 15:14:25 +01:00
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
branson: fix install ( #11093 )
2019-04-02 16:44:46 -06:00
breakdancer
breseq
breseq package: Add version 0.33.2 and zlib dependency ( #10747 )
2019-03-08 20:57:00 -06:00
bridger
bridger: new package at 2014-12-01 ( #10611 )
2019-03-01 10:09:23 -06:00
brigand
brotli
Nix package: update dependencies ( #10646 )
2019-03-07 13:32:55 -06:00
bsseeker2
bsseeker2 package: Add versions 2.1.8 and 2.1.5 ( #10748 )
2019-03-06 20:55:06 -06:00
bucky
bumpversion
busco
butter
bwa
bwtool
byobu
bzip2
c-blosc
c-blosc package: add version 1.16.3 ( #11014 )
2019-03-26 15:40:24 -05:00
c-lime
cabana
cabana: cuda backend ( #10660 )
2019-03-18 14:02:28 -06:00
caffe
cairo
cairomm
caliper
Update caliper package ( #10750 )
2019-03-12 20:28:13 -05:00
callpath
camellia
camellia: fix hdf5 dependency ( #11810 )
2019-07-01 13:40:53 -04:00
candle-benchmarks
cantera
cantera: make sundials dependency optional ( #10764 )
2019-03-05 19:58:00 +01:00
canu
canu: Add versions 1.8 and 1.7 ( #10978 )
2019-03-22 11:27:36 +01:00
cap3
capstone
cardioid
cares
casacore
casacore does not support fftw+mpi . ( #10839 )
2019-03-12 19:59:48 -05:00
cask
casper
catalyst
vtk, paraview, catalyst packages: Add maintainers ( #11774 )
2019-06-19 10:57:19 -07:00
catch
Catch: 2.8.0 ( #11570 )
2019-05-28 15:24:18 -05:00
cbench
cblas
cbtf
OpenSpeedShop/CBTF package updates and fixes ( #11470 )
2019-05-16 18:19:55 -07:00
cbtf-argonavis
OpenSpeedShop/CBTF package updates and fixes ( #11470 )
2019-05-16 18:19:55 -07:00
cbtf-argonavis-gui
OpenSpeedShop/CBTF package updates and fixes ( #11470 )
2019-05-16 18:19:55 -07:00
cbtf-krell
cbtf-krell: fixed to build on ARM. ( #11859 )
2019-06-27 11:55:15 +02:00
cbtf-lanl
OpenSpeedShop/CBTF package updates and fixes ( #11470 )
2019-05-16 18:19:55 -07:00
ccache
ccfits
New package: CCfits ( #11262 )
2019-05-07 03:58:29 +09:00
cctools
cdbfasta
cdd
cddlib
cdecimal
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
cdhit
cdhit - add new release 4.8.1 checksum ( #11130 )
2019-04-09 10:33:07 +02:00
cdo
cdo: Remove obsolete patch ( #11854 )
2019-06-26 19:36:41 -05:00
ceed
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
cereal
ceres-solver
cfitsio
cgal
cgal: add version 4.13
2019-04-18 19:31:08 -07:00
cgm
cgns
cgns package: add version 3.4.0 and update hdf5 dependency ( #10803 )
2019-03-11 19:43:16 -05:00
channelflow
chapel
Added a package for chapel. ( #11002 )
2019-03-24 17:18:19 -05:00
charliecloud
add charliecloud-0.9.10 ( #11471 )
2019-06-13 16:50:55 -05:00
charmpp
Update remaining packages to use Stage.source_path ( #11662 )
2019-06-12 17:07:47 -07:00
chatterbug
check
chill
New packages: Chill and IEGenLib ( #11406 )
2019-06-27 13:41:06 -07:00
chlorop
chombo
chrpath
cinch
Added Cinch Spackage ( #11759 )
2019-06-18 16:45:58 -05:00
circos
cistem
citcoms
cityhash
clamav
Fix pkgconfig dependencies ( #11864 )
2019-06-27 14:56:42 +02:00
clamr
clapack
claw
Add version 1.2.2 and 1.2.3 to the package ( #11748 )
2019-06-17 16:03:26 +02:00
cleaveland4
cleverleaf
clfft
clhep
Update remaining packages to use Stage.source_path ( #11662 )
2019-06-12 17:07:47 -07:00
clingo
cln
New package: CLN library ( #11167 )
2019-04-16 16:03:51 -07:00
cloc
cloog
cloverleaf
cloverleaf: overwrite flags ( #10829 )
2019-03-07 14:08:36 -07:00
cloverleaf3d
cloverleaf3d: overwrite flags ( #10830 )
2019-03-07 14:08:52 -07:00
clp
clustalo
clustalw
cmake
Remove gnutls dependency and disable openssl when appropriate ( #11646 )
2019-06-10 11:19:26 -04:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator
Cnvnator: a new package. ( #8959 )
2019-02-13 11:15:00 +01:00
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
connect-proxy
connect-proxy: new package ( #10635 )
2019-02-19 11:30:09 +01:00
constype
converge
coreutils
corset
cosmomc
cosp2
cotter
New package: cotter ( #10838 )
2019-03-11 19:46:40 -05:00
cowsay
cowsay: new package ( #11743 )
2019-06-16 17:29:25 +02:00
cp2k
elpa: override headers prop for common include-dir localization
2019-05-10 03:43:02 +09:00
cppad
cppcheck
Add cppcheck version 1.87. ( #11536 )
2019-05-22 18:52:48 -05:00
cppgsl
cpprestsdk
cppunit
cppunit: New version 1.14.0. ( #11359 )
2019-05-03 09:12:22 +02:00
cppzmq
cpu-features
cpuinfo
cquery
cquery: new package ( #10636 )
2019-02-19 11:30:41 +01:00
cram
cryptopp
cscope
csdp
ctffind
cub
cube
Update scorep and friends ( #11523 )
2019-05-21 12:28:12 +02:00
cubelib
Update scorep and friends ( #11523 )
2019-05-21 12:28:12 +02:00
cubew
Update scorep and friends ( #11523 )
2019-05-21 12:28:12 +02:00
cuda
Update remaining packages to use Stage.source_path ( #11662 )
2019-06-12 17:07:47 -07:00
cuda-memtest
cudnn
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
cufflinks
cups
curl
cURL package: add gssapi option ( #11344 )
2019-05-04 05:43:56 +09:00
cvs
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
Darshan 3.1.7 and develop versions fpr darshan-runtime and darshan-util ( #11269 )
2019-05-01 09:42:32 +09:00
darshan-util
Darshan 3.1.7 and develop versions fpr darshan-runtime and darshan-util ( #11269 )
2019-05-01 09:42:32 +09:00
dash
datamash
dataspaces
dateutils
dateutils: new package ( #11623 )
2019-06-08 13:32:57 -07:00
davix
dbcsr
dbus
new package: kitty terminal ( #9621 )
2019-04-18 08:53:52 +02:00
dcmtk
dd4hep
Add a DD4hep package ( #9208 )
2019-02-13 22:58:27 -06:00
dealii
dealii: add 9.1.1 ( #11573 )
2019-05-28 15:22:39 -05:00
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign-tx
diamond
diffsplice
diffutils
Download GNU packages from mirrors (Part 2) ( #10555 )
2019-02-20 09:08:42 -06:00
direnv
discovar
discovardenovo
dislin
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
draco
Draco: add variants ( #10925 )
2019-03-19 08:49:30 -06:00
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst
dyninst: rework the cmake args for version 10.1 and later ( #11484 )
2019-05-18 23:00:48 -05:00
dysco
New package: dysco ( #10767 )
2019-03-06 20:25:06 -06:00
ea-utils
easybuild
ebms
eccodes
ecflow
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
eclipse-gcj-parser
ecp-io-sdk
New Packages: ecp-io-sdk and ecp-viz-sdk ( #11073 )
2019-04-10 16:18:05 -07:00
ecp-proxy-apps
ecp-proxy-apps: update version ( #11119 )
2019-04-06 15:33:29 -07:00
ecp-viz-sdk
New Packages: ecp-io-sdk and ecp-viz-sdk ( #11073 )
2019-04-10 16:18:05 -07:00
ed
editline
Nix package: update dependencies ( #10646 )
2019-03-07 13:32:55 -06:00
editres
eigen
add eigen v3.3.7 ( #10955 )
2019-03-21 12:16:26 -05:00
elasticsearch
elemental
elfutils
Elfutils package: add m4 dependency and version 0.176 ( #10834 )
2019-03-12 17:35:59 -05:00
elk
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
elmer-fem
New package: elmer-fem ( #10860 )
2019-03-25 19:47:15 -05:00
elpa
elpa: override headers prop for common include-dir localization
2019-05-10 03:43:02 +09:00
elsd
elsdc
elsi
New Package: ELSI ( #11605 )
2019-06-18 18:30:57 -07:00
emacs
ember
remove binary file that got added inadvertently via #11828 ( #11848 )
2019-06-25 21:31:36 -04:00
emboss
energyplus
entrezdirect
environment-modules
environment-modules: add version 4.2.4 ( #11307 )
2019-04-27 20:32:57 +02:00
eospac
eospac package: replace md5 checksums with sha256 ( #11757 )
2019-06-18 19:20:35 -07:00
eqr
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
er
erfa
New package: erfa ( #10763 )
2019-03-05 17:40:39 -06:00
erne
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exmcutils
swift-t: New release packages for 1.4.3 ( #11684 )
2019-06-14 09:49:51 -05:00
exodusii
exonerate
exonerate use autotools. ( #11805 )
2019-06-21 07:55:29 -04:00
expat
expect
express
extrae
exuberant-ctags
eztrace
f18
f90cache
f90cache: change the download url ( #11838 )
2019-06-27 12:55:48 -04:00
fabtests
Mercury package: add version 1.0.1 and update dependencies ( #10906 )
2019-04-20 15:03:18 -07:00
falcon
faodel
FAODEL: Add FAODEL package to spack ( #11323 )
2019-05-06 13:44:32 -04:00
fast-global-file-status
fasta
fastjar
fastmath
Update FASTMath metapackage ( #11171 )
2019-04-12 16:54:19 -05:00
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fenics, llvm: Fix package names being overriden ( #11879 )
2019-06-28 15:59:19 +02:00
fermi
fermikit
fermisciencetools
ferret
ffmpeg
ffmpeg package: add aom support ( #11210 )
2019-05-02 03:33:03 +09:00
fftw
fgsl
New package: fgsl: fortran interface to GSL ( #11775 )
2019-06-19 10:59:11 -07:00
figtree
fimpute
findutils
fio
fio package: add optional libaio dependency ( #11083 )
2019-04-02 18:21:45 -07:00
fish
fixesproto
flac
flang
flann
flash
flatbuffers
flatcc
flecsale
flecsi
added min version for gasnet and legion ( #11853 )
2019-06-26 14:46:18 -06:00
flex
flex: Apply 2.6.4 patch regardless of gcc version ( #10841 )
2019-03-11 15:12:28 -05:00
flint
flit
fltk
flux-core
add pkgconfig as dependence for flux packages ( #11036 )
2019-04-01 18:33:55 +02:00
flux-sched
add pkgconfig as dependence for flux packages ( #11036 )
2019-04-01 18:33:55 +02:00
fluxbox
fmt
fmt: Add version 5.3.0 with cxxstd variant support ( #11799 )
2019-06-25 12:01:31 +01:00
foam-extend
openfoam: rename openfoam-com to openfoam ( #11876 )
2019-07-01 22:54:36 -07:00
folly
font-util
font-util: Add missing mkfontdir build dependency ( #11865 )
2019-06-27 15:53:05 +02:00
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fqtrim
fqtrim: Create new package ( #10861 )
2019-03-12 21:30:30 -05:00
fr-hit
freebayes
freeglut
freetype
Dynamic library/include paths ( #8136 )
2019-02-13 17:38:14 -06:00
freexl
fseq
fsl
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
fslsfonts
fstobdf
fstrack
ftgl
ftgl: update to 2.1.3-rc5. ( #11214 )
2019-04-23 09:42:10 -05:00
funhpc
fyba
fzf
fzf package: change mirror and add vim plugin ( #10920 )
2019-04-10 16:23:37 -07:00
g4abla
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4emlow
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4ensdfstate
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4ndl
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4neutronxs
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4photonevaporation
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4pii
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4radioactivedecay
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4realsurface
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4saiddata
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
g4tendl
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
gapbs
gapcloser
gapfiller
gasnet
gasnet: 2019.3.0 ( #11503 )
2019-05-17 12:02:43 -06:00
gatk
gaudi
Gaudi package: new version + xenv bugfix ( #10668 )
2019-02-21 19:04:03 -06:00
gaussian
gawk
gblocks
gcc
gcc: Add 9.1.0 ( #11386 )
2019-05-09 11:25:29 -05:00
gccmakedep
gccxml
gconf
gcta
gdal
ncl: Fix build ( #11855 )
2019-06-26 19:36:29 -05:00
gdb
gdb: add version 8.2.1 ( #10988 )
2019-03-22 11:00:28 +01:00
gdbm
gdk-pixbuf
gdl
Add GDL 0.9.9 ( #11760 )
2019-06-20 13:36:10 -04:00
geant4
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
geant4-data
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
geopm
GEOPM package: add version 1.0.0-rc2 ( #10737 )
2019-03-07 13:18:05 -06:00
geos
Add GEOS 3.7.2 ( #11734 )
2019-06-17 20:58:43 -04:00
gettext
gettext: fix dependency type of xz ( #10935 )
2019-03-20 04:57:08 +01:00
gflags
ghost
ghostscript
various package version updates and build fixes ( #10775 )
2019-03-05 11:59:47 -08:00
ghostscript-fonts
giflib
ginkgo
Ginkgo package: update to release 1.0.0 ( #11312 )
2019-05-02 08:25:39 +09:00
git
Revert "Git: patch to make git relocatable with buildcache. ( #11596 )" ( #11625 )
2019-06-04 21:09:05 -05:00
git-fat-git
git-imerge
git-lfs
git-lfs: add version 2.7.2 ( #11311 )
2019-04-30 10:20:03 +02:00
gl2ps
gl2ps: add missing dependencies and doc variant. ( #10886 )
2019-03-25 20:04:33 -05:00
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap
gmap-gsnap: add 2019-05-12 ( #11453 )
2019-05-14 15:58:48 -05:00
gmime
gmodel
gmp
gmsh
Update GMSH to 4.2.2 with OpenMP variant ( #10914 )
2019-03-20 05:12:57 +01:00
gmt
gmtsar
New package: GMTSAR ( #11315 )
2019-05-04 05:40:14 +09:00
gnat
gnu-prolog
gnupg
Update GnuPG and associated packages ( #11564 )
2019-05-26 20:41:37 -05:00
gnuplot
gnutls
gnutls: workaround guile build error on macos ( #11751 )
2019-06-25 13:08:28 -04:00
go
Added newer GoLang versions ( #11756 )
2019-06-17 17:23:09 -05:00
go-bootstrap
gobject-introspection
googletest
gotcha
Gotcha package: fixed to build on ARM. ( #11840 )
2019-06-27 15:34:11 -07:00
gource
gperf
gperftools
gpgme
gplates
Restrict gplates to proj@:5 ( #11761 )
2019-06-18 15:15:14 -04:00
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
grass
GRASS GIS does not yet support PROJ.6 ( #11762 )
2019-06-17 20:59:12 -04:00
grib-api
grnboost
groff
gromacs
gromacs: added 2019 patch releases ( #11211 )
2019-04-17 12:48:06 -05:00
gsl
gslib
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hacckernels: fix install ( #11089 )
2019-04-02 15:58:40 -06:00
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz
new package: kitty terminal ( #9621 )
2019-04-18 08:53:52 +02:00
harminv
hc
hdf
Add HDF 4.2.14 ( #11723 )
2019-06-16 08:45:23 +02:00
hdf5
hdf5: add symbols ( #10991 )
2019-04-20 15:09:46 -07:00
hdf5-blosc
help2man
help2man: Add version 1.47.8 and perl runtime dependency ( #10862 )
2019-03-13 15:11:45 +01:00
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea
hmmer
homer
hoomd-blue
hotspot
hotspot: new package at 6.0 ( #11610 )
2019-06-04 09:35:54 +02:00
hpccg
hpctoolkit
hpcviewer
intel-xed and hpcviewer: adapt to new resource placement ( #11676 )
2019-06-13 09:53:30 +02:00
hpgmg
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
hpl
Fix latest HPL for MKL use ( #11712 )
2019-06-15 15:46:59 -05:00
hpx
hpx: overhaul of the package recipe ( #11194 )
2019-04-19 16:58:46 +02:00
hpx5
hsakmt
hstr
htop
htslib
samtools package: Add version 1.5 and htslib 1.5 dependency ( #10825 )
2019-03-11 19:29:29 -05:00
httpie
hub
hugo
hunspell
hwloc
hybpiper
hydra
hydrogen
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
hyphy
hyphy: new package at 2.3.14 ( #10759 )
2019-03-01 09:31:46 -06:00
hypre
hypre: superlu-dist-link-2.15.0.patch is now in hypre@develop ( #11829 )
2019-06-24 17:55:04 -04:00
i3
ibm-java
hpcviewer: new package ( #10878 )
2019-03-15 15:47:22 -05:00
ibmisc
Restrict ibmisc to proj@:4 ( #11753 )
2019-06-17 18:02:09 -04:00
iceauth
icedtea
icet
ico
icu4c
icu4c: Add cxxstd variant ( #10552 )
2019-02-13 23:05:39 -06:00
id3lib
idba
iegenlib
New packages: Chill and IEGenLib ( #11406 )
2019-06-27 13:41:06 -07:00
igraph
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel
intel: add version 19.0.4 ( #11741 )
2019-06-15 23:19:58 -05:00
intel-daal
intel: add 2019.3 ( #10843 )
2019-03-08 14:50:58 -08:00
intel-gpu-tools
intel-ipp
intel: add 2019.3 ( #10843 )
2019-03-08 14:50:58 -08:00
intel-mkl
intel: consolidate libs() in the base class ( #11143 )
2019-04-09 13:54:21 -07:00
intel-mkl-dnn
Add new versions for intel-mkl-dnn. ( #11549 )
2019-05-26 20:44:34 -05:00
intel-mpi
intel: add version 19.0.4 ( #11741 )
2019-06-15 23:19:58 -05:00
intel-parallel-studio
intel: add version 19.0.4 ( #11741 )
2019-06-15 23:19:58 -05:00
intel-pin
new package: intel-pin ( #10546 )
2019-03-01 12:29:01 -06:00
intel-tbb
intel-tbb: fix patch for old compilers ( #11371 )
2019-05-18 21:00:32 -05:00
intel-xed
Resources: use expanded archive name by default ( #11688 )
2019-06-20 11:09:31 -07:00
intltool
ior
ior package: Add patch to fix 3.2.0 with hdf5 ( #10923 )
2019-03-26 13:36:54 -05:00
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
itstool
itsx
jackcess
Update URL for older version of jackcess ( #11724 )
2019-06-16 08:46:13 +02:00
jags
jansson
jasper
jbigkit
jchronoss
jdk
jdk package: Fix fetching with curl 7.64.0+ ( #11108 )
2019-04-19 14:43:45 -07:00
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-fortran
packages/json-fortran: initial commit, required by CP2K+sirius
2019-05-10 03:43:02 +09:00
json-glib
jsoncpp
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3
kealib
kealib package: add version 1.4.11 ( #10706 )
2019-02-26 18:39:27 -06:00
kentutils
kibana
kim-api
kim-api and openkim-models: version update and rename ( #11065 )
2019-04-02 17:44:24 -07:00
kitty
kitty: Fix pkgconfig dependency ( #11465 )
2019-05-15 12:18:16 +02:00
kmergenie
kokkos
Kokkos package: add debug variant ( #11469 )
2019-05-16 17:35:23 -07:00
kraken
krb5
krims
kripke
kripke: fix install ( #11090 )
2019-04-02 16:05:21 -06:00
kvasir-mpl
kvtree
ladot
Add ladot package ( #10905 )
2019-03-15 01:13:25 -05:00
laghos
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
lammps
added jpeg,png,ffmpeg variants to lammps ( #10404 )
2019-06-12 21:02:20 -06:00
last
lastz
latte
launchmon
Fix pkgconfig dependencies ( #11864 )
2019-06-27 14:56:42 +02:00
lazyten
lbann
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
lbxproxy
lbzip2
lcals
lcms
ldc
ldc-bootstrap
legion
legion: added recent releases ( #11889 )
2019-06-29 07:12:24 -06:00
lemon
leveldb
Add master branch of leveldb ( #11405 )
2019-05-13 14:35:15 -04:00
lftp
libaec
libaio
libapplewm
libarchive
libassuan
Update GnuPG and associated packages ( #11564 )
2019-05-26 20:41:37 -05:00
libatomic-ops
libbeagle
libbeagle: add 3.1.2 ( #10789 )
2019-03-05 14:02:52 +01:00
libbeato
libbsd
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
libbson
libcanberra
libcap
libceed
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
libcerf
libcheck
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata
libeatmydata: new package ( #10941 )
2019-03-20 04:47:45 +01:00
libedit
libelf
libelf: move url to fossies.org ( #10815 )
2019-03-06 11:42:44 -08:00
libemos
libepoxy
add glx variant to libepoxy ( #11814 )
2019-06-24 17:57:17 -04:00
libev
libevent
libevpath
libfabric
Mercury package: add version 1.0.1 and update dependencies ( #10906 )
2019-04-20 15:03:18 -07:00
libffi
libffs
libfontenc
libfs
libgcrypt
Update GnuPG and associated packages ( #11564 )
2019-05-26 20:41:37 -05:00
libgd
libgeotiff
Add libgeotiff 1.5.1 ( #11731 )
2019-06-17 20:46:46 -04:00
libgit2
libgpg-error
Update GnuPG and associated packages ( #11564 )
2019-05-26 20:41:37 -05:00
libgpuarray
libgridxc
libgtextutils
libharu
libhio
Add libhio v1.4.1.3, 1.4.1.1 ( #10699 )
2019-02-26 09:56:20 +01:00
libiberty
libice
libiconv
libidn2
CMake package: add dependencies ( #11257 )
2019-05-15 10:07:31 -07:00
libint
cp2k is now a MakefilePackage ( #10570 )
2019-02-14 07:11:20 +01:00
libjpeg
libjpeg-turbo
Add libjpeg-turbo 2.0.2 ( #11725 )
2019-06-16 08:47:14 +02:00
libksba
liblbxutil
liblockfile
libmatheval
libmaxminddb
libmesh
Libmesh updates ( #11750 )
2019-06-17 19:38:19 -05:00
libmng
libmo-unpack
New packages: libmo-unpack and py-mo-pack ( #11895 )
2019-07-01 18:24:45 -07:00
libmongoc
libmonitor
libnbc
libnl
libnova
libnrm
New packages: nrm and libnrm ( #11777 )
2019-06-20 19:21:44 -07:00
libnsl
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
libogg
liboldx
libpcap
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
libpciaccess
libpfm4
libpipeline
libplist
libplist, libusbmuxd: Fix pkgconfig dependency ( #10876 )
2019-03-13 14:55:23 -05:00
libpmemobj-cpp
New package: libpmemobj-cpp ( #11309 )
2019-05-02 08:12:01 +09:00
libpng
libpsl
libpthread-stubs
libquo
librom
libseccomp
Nix package: update dependencies ( #10646 )
2019-03-07 13:32:55 -06:00
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium
added libsodium 1.0.16 and 1.0.17 ( #11231 )
2019-04-19 12:19:51 -07:00
libspatialindex
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
libspatialite
Restrict libspatialite to proj@:5' ( #11752 )
2019-06-17 23:48:16 -04:00
libsplash
libssh
libssh2
libsvm
libszip
libtasn1
new package: libtasn1 ( #10681 )
2019-02-26 20:52:04 -06:00
libtermkey
libtiff
Add libtiff 4.0.10 ( #11732 )
2019-06-16 08:52:16 +02:00
libtirpc
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
libtomlc99
libtomlc99: Update version
2019-06-30 16:02:08 -07:00
libtool
libunistring
libunistring: added newer versions and patch older ones ( #11255 )
2019-05-04 03:21:43 +09:00
libunwind
libusb
new package: libusb ( #10682 )
2019-02-26 20:52:47 -06:00
libusbmuxd
libplist, libusbmuxd: Fix pkgconfig dependency ( #10876 )
2019-03-13 14:55:23 -05:00
libuuid
libuv
CMake package: update libuv dependency constraints ( #10824 )
2019-03-07 12:42:24 -06:00
libvdwxc
packages/libvdwxc: initial commit, required for SIRIUS
2019-05-10 03:43:02 +09:00
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
new package: kitty terminal ( #9621 )
2019-04-18 08:53:52 +02:00
libxau
libxaw
libxaw: added version 1.0.12 ( #10591 )
2019-03-14 12:55:56 +01:00
libxaw3d
libxc
cp2k is now a MakefilePackage ( #10570 )
2019-02-14 07:11:20 +01:00
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
new package: kitty terminal ( #9621 )
2019-04-18 08:53:52 +02:00
libxkbfile
libxkbui
libxml2
libxml2: New version 2.9.9. ( #11357 )
2019-05-03 09:13:22 +02:00
libxmu
libxp
libxpm
libxpm: revert change made in unrelated PR ( #11634 )
2019-06-05 15:13:19 -05:00
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
LIBXSMM 1.12.1 ( #11538 )
2019-05-23 10:16:32 -05:00
libxstream
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
new package: libyaml ( #10634 )
2019-02-19 12:45:31 -06:00
libyogrt
libyogrt package: add versions, scheduler support ( #10884 )
2019-03-27 10:25:31 -07:00
libzip
lighttpd
likwid
likwid package: Fix build with version 4.3.4 ( #11878 )
2019-06-28 10:05:38 -07:00
linkphase3
linux-headers
listres
llvm
llvm: don't build CppBackend for flang versions of llvm ( #11841 )
2019-06-30 17:04:29 -07:00
llvm-openmp-ompt
lm-sensors
lmdb
lmod
Update remaining packages to use Stage.source_path ( #11662 )
2019-06-12 17:07:47 -07:00
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf
Add LSF dependency for OpenMPI ( #11532 )
2019-05-29 10:38:55 -07:00
lsof
ltrace
lua
Updated lmod (to version 8.1.5) and associated dependencies ( #11552 )
2019-05-24 12:45:52 -05:00
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
bugfix: lua-luafilesystem package should use stage.source_path ( #11648 )
2019-06-06 14:07:46 -07:00
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4
lz4: Add 1.9.0 ( #11207 )
2019-04-17 09:30:23 -05:00
lzma
lzo
lzo package: add version 2.10 ( #11015 )
2019-03-26 15:40:48 -05:00
m4
Define LDFLAGS when using fujitsu compiler ( #11669 )
2019-06-10 11:01:32 -04:00
macsio
macsio: fix install ( #11088 )
2019-04-02 15:58:21 -06:00
mad-numdiff
mafft
magics
Restrict magics to proj@:5 ( #11763 )
2019-06-17 21:33:25 -04:00
magma
Add version 2.5.1-alpha1 of MAGMA ( #11486 )
2019-05-17 08:19:32 -05:00
makedepend
mallocmc
man-db
manta
mapserver
Specify which versions of PROJ work with MapServer ( #11764 )
2019-06-17 21:34:54 -04:00
maq
margo
Add margo package and add rc1 tag for argobots package ( #11281 )
2019-05-01 09:47:34 +09:00
mariadb
New package: mariadb-c-client ( #7729 )
2019-03-15 14:12:30 -05:00
mariadb-c-client
New package: mariadb-c-client ( #7729 )
2019-03-15 14:12:30 -05:00
masa
Add new versions of metaphysicl and change masa to use branch instead of tag. ( #11436 )
2019-05-14 08:56:52 +09:00
masurca
Masurca ( #11286 )
2019-04-30 08:24:12 -05:00
mathematica
mathematica: new package at 12.0.0 ( #11509 )
2019-05-30 13:21:16 -04:00
matio
matlab
maven
maverick
mawk
mbedtls
mbedtls: add pic variant ( #11558 )
2019-05-24 21:50:13 -05:00
mc
mcl
mdtest
med
meep
mefit
megadock
megadock: new package at 4.0.3 ( #10537 )
2019-05-14 14:47:19 -05:00
megahit
megahit: Add version 1.1.4 ( #10979 )
2019-03-22 11:19:28 +01:00
memaxes
meme
memkind
memsurfer
memsurfer: add new package
2019-04-18 19:31:08 -07:00
meraculous
mercurial
mercury
Clean up mercury package and add boostsys, shared variants ( #11368 )
2019-05-09 12:56:10 -05:00
mesa
mesa: Revert updated meson build and restore autotools build ( #11595 )
2019-06-03 10:55:36 -04:00
mesa-glu
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
meshkit
meson
mesquite
metabat
metaphysicl
Add new versions of metaphysicl and change masa to use branch instead of tag. ( #11436 )
2019-05-14 08:56:52 +09:00
metis
mfem
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
mgis
Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). ( #11109 )
2019-04-08 09:09:14 +02:00
microbiomeutil
migrate
minced
mindthegap
miniaero
miniamr
miniamr: add develop version and update release ( #11101 )
2019-04-03 16:17:04 -06:00
miniasm
miniconda2
miniconda 2 and 3 packages: add version 4.6.14 ( #11232 )
2019-04-19 17:42:02 -07:00
miniconda3
miniconda 2 and 3 packages: add version 4.6.14 ( #11232 )
2019-04-19 17:42:02 -07:00
minife
minighost
minigmg
minimap2
minimd
miniqmc
miniqmc: fix install ( #11091 )
2019-04-02 16:23:37 -06:00
minisign
minismac2d
minitri
minivite
Bumping-up miniVite to version 1.1 ( #11828 )
2019-06-24 19:41:01 -06:00
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg
New package: MMG ( #10902 )
2019-03-25 20:24:40 -05:00
moab
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-cxx-driver
mono
mono package: add new versions ( #10670 )
2019-02-21 18:52:30 -06:00
montage
montage: new package at 6.0 ( #11696 )
2019-06-14 16:40:50 -05:00
mosh
mothur
motif
motioncor2
mount-point-attributes
mozjs
mpark-variant
mpc
Download GNU packages from mirrors (Part 2) ( #10555 )
2019-02-20 09:08:42 -06:00
mpdecimal
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
mpe2
mpe2 use autotools and add libx11 dependency. ( #11807 )
2019-06-21 07:54:51 -04:00
mpest
mpfr
mpibash
mpiblast
mpich
mpich: wrapperrpath variant allows disablement of RPATH usage in mpicc
2019-07-01 15:09:40 -07:00
mpifileutils
mpifileutils v0.9.1 ( #11216 )
2019-04-17 18:11:14 -05:00
mpilander
mpileaks
mpileaks: use autotools. ( #11808 )
2019-06-21 07:55:04 -04:00
mpip
various package version updates and build fixes ( #10775 )
2019-03-05 11:59:47 -08:00
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
mscgen
msgpack-c
mshadow
msmc
multitail
multitime
multiverso
mummer
mumps
MUMPS: add version 5.2.0 ( #11234 )
2019-04-19 15:55:56 -05:00
munge
muparser
muscle
muse
muster
mutationpp
new package: mutationpp ( #11705 )
2019-06-15 10:29:36 -05:00
mvapich2
mvapich2 package: add version 2.3.1 ( #11037 )
2019-04-02 17:07:06 -07:00
mxml
mxnet
mysql
mysql: 5.7.X versions link boost ( #11237 )
2019-04-19 15:34:55 -07:00
nag
nalu
nalu-wind
nalu-wind package: require hypre without superlu-dist. ( #11022 )
2019-04-02 17:02:22 -07:00
namd
nano
nanoflann
nanopb
nasm
Add nasm 2.14.02 ( #11729 )
2019-06-16 08:50:05 +02:00
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
nccmp
ncdu
ncftp
ncl
ncl: Fix build ( #11855 )
2019-06-26 19:36:29 -05:00
nco
nco: Add 4.7.9 ( #11389 )
2019-05-09 12:33:36 -05:00
ncurses
ncview
ndiff
nek5000
Nek5000: Fix CFLAGS and FFLAGS handling ( #11339 )
2019-05-04 03:52:45 +09:00
nekbone
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
nekcem
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
nektar
nektools
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
neovim
nest
nest: change cmake_options to args. ( #11273 )
2019-04-24 11:09:49 +09:00
netcdf
netcdf: Fix build if curl is not installed ( #11387 )
2019-05-09 13:23:49 -04:00
netcdf-cxx
netcdf-cxx package: set ldflags for hdf5 and netcdf ( #11026 )
2019-04-02 17:04:09 -07:00
netcdf-cxx4
netcdf-fortran
Bump netcdf-fortran version to 4.4.5 ( #11790 )
2019-06-19 17:38:17 -05:00
netgauge
netgen
netgen: update broken URL ( #10882 )
2019-03-22 10:01:07 -05:00
netlib-lapack
netlib-scalapack
netlib-scalapack: fix compatibility with mpi2 i.e openmpi-4 ( #11124 )
2019-04-07 10:01:54 -05:00
netlib-xblas
nettle
nettle: fix broken build ( #11611 )
2019-06-05 19:09:01 -05:00
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja{-fortran}: make pkgs nonvirtual ( fix #11628 ) ( #11629 )
2019-06-10 12:53:30 -04:00
ninja-fortran
ninja{-fortran}: make pkgs nonvirtual ( fix #11628 ) ( #11629 )
2019-06-10 12:53:30 -04:00
nix
nix package: improve dependencies based on prerequisites from manual. ( #10927 )
2019-03-26 13:39:40 -05:00
nlohmann-json
NLohmann-JSON: v3.5.0 ( #10615 )
2019-02-18 08:53:50 +01:00
nlopt
nmap
nnvm
node-js
node-js package: Depend on zlib when +zlib ( #10965 )
2019-03-26 14:43:30 -05:00
notmuch
npb
npm
npth
nrm
New packages: nrm and libnrm ( #11777 )
2019-06-20 19:21:44 -07:00
nseg
Update remaining packages to use Stage.source_path ( #11662 )
2019-06-12 17:07:47 -07:00
nspr
ntpoly
New Package: NTPoly ( #11412 )
2019-05-15 04:06:10 +09:00
numactl
numdiff
remove myself from maintainers of some packages ( #11319 )
2019-04-30 10:16:53 +02:00
nut
nut: add v0.1.1 ( #11444 )
2019-05-14 16:36:31 -06:00
nvptx-tools
nwchem
nyancat
ocaml
occa
[WIP] CEED 2.0 ( #10903 )
2019-04-17 17:37:41 -07:00
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
openfoam: rename openfoam-com to openfoam ( #11876 )
2019-07-01 22:54:36 -07:00
of-catalyst
openfoam: rename openfoam-com to openfoam ( #11876 )
2019-07-01 22:54:36 -07:00
of-precice
openfoam: rename openfoam-com to openfoam ( #11876 )
2019-07-01 22:54:36 -07:00
omega-h
omega-h package: add version 9.27.0 ( #11366 )
2019-05-04 06:59:26 +09:00
ompss
ompt-openmp
oniguruma
ont-albacore
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
opa-psm2
opam
opari2
Fix URLs for VI-HPS projects ( #10821 )
2019-03-11 20:12:44 -05:00
openbabel
openblas
Add OpenBLAS 0.3.6 ( #11375 )
2019-05-07 13:36:38 -05:00
opencoarrays
opencv
OpenCV: New versions, adjust protobuf dependency ( #11243 )
2019-05-01 03:37:47 +09:00
openexr
openfast
openfoam
openfoam: rename openfoam-com to openfoam ( #11876 )
2019-07-01 22:54:36 -07:00
openfoam-org
openfoam: rename openfoam-com to openfoam ( #11876 )
2019-07-01 22:54:36 -07:00
openfst
opengl
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
openglu
openimageio
openjdk
New package: ibm-java ( #10777 )
2019-03-12 18:05:47 -05:00
openjpeg
Add openjpeg 2.3.1 ( #11728 )
2019-06-16 08:49:36 +02:00
openkim-models
kim-api and openkim-models: version update and rename ( #11065 )
2019-04-02 17:44:24 -07:00
openmc
openmpi
Add LSF dependency for OpenMPI ( #11532 )
2019-05-29 10:38:55 -07:00
opennurbs
openpa
openpmd-api
openPMD-api: pybind11>=2.3.0 ( #11744 )
2019-06-16 17:47:55 +02:00
openscenegraph
openslide
openspeedshop
OpenSpeedShop/CBTF package updates and fixes ( #11470 )
2019-05-16 18:19:55 -07:00
openspeedshop-utils
OpenSpeedShop/CBTF package updates and fixes ( #11470 )
2019-05-16 18:19:55 -07:00
openssh
openssl
openssl: Add 1.1.1b, 1.1.0j and 1.0.2r ( #10779 )
2019-03-05 16:26:18 +01:00
opium
optional-lite
Update optional-lite and span-lite to use CMakePackage ( #11407 )
2019-05-20 13:04:06 -05:00
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osu-micro-benchmarks
osu-micro-benchmarks: add version 5.6.1 ( #11779 )
2019-06-19 11:04:03 -07:00
otf
OTF package: use autotools. ( #11873 )
2019-06-28 10:13:21 -07:00
otf2
Fix URLs for VI-HPS projects ( #10821 )
2019-03-11 20:12:44 -05:00
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
New package: pal ( #10766 )
2019-03-05 17:41:54 -06:00
paml
panda
pandaseq
pango
pangomm
papi
papi: Add 5.7.0 ( #11390 )
2019-05-09 11:26:05 -05:00
papyrus
paradiseo
parallel
added checksum for 20190222 release of gnu parallel ( #10865 )
2019-03-12 19:40:29 -05:00
parallel-netcdf
PNetCDF package: enable option required by NetCDF ( #11420 )
2019-05-15 05:15:38 +09:00
paraver
paraview
vtk, paraview, catalyst packages: Add maintainers ( #11774 )
2019-06-19 10:57:19 -07:00
parmetis
parmgridgen
parquet
parsimonator
parsplice
added branch multisplice to the parsplice package ( #11504 )
2019-05-17 12:08:40 -06:00
partitionfinder
Rename py-pytables -> py-tables ( #11847 )
2019-06-25 21:32:49 -04:00
pasta
New package: PASTA ( #11338 )
2019-05-04 03:50:54 +09:00
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre
qt: Use more system dependencies and fix build with new gcc versions ( #10817 )
2019-03-12 20:04:11 -05:00
pcre2
qt: Use more system dependencies and fix build with new gcc versions ( #10817 )
2019-03-12 20:04:11 -05:00
pdf2svg
Updates to poppler to get pdf2svg working ( #11681 )
2019-06-15 17:32:39 -05:00
pdftk
pdsh
pdt
Package/tau/tau 2.28.1 update ( #11591 )
2019-05-31 10:01:19 -05:00
pegtl
pennant
percept
perl
Fix bug when system perl is used. ( #11034 )
2019-04-10 08:44:27 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-logger-simple
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intspan
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml
perl-yaml-libyaml
petsc
petsc: add version 3.11.3 ( #11857 )
2019-06-27 07:02:03 +02:00
pexsi
pfft
pflotran
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
pfunit
pfunit: fixed a typo ( #11843 )
2019-06-25 14:06:52 -04:00
pgdspider
pgi
Add new version of PGI compiler. ( #11417 )
2019-05-10 13:11:23 -05:00
pgmath
phantompeakqualtools
phast
phasta
phist
phist can't be compiled with gcc older than 4.9.2 ( #11677 )
2019-06-25 12:53:21 -04:00
phrap-crossmatch-swat
phred
new package: phred ( #10700 )
2019-02-26 19:14:58 -06:00
phylip
phyluce
picard
picard package: Add version 2.19.0 ( #11018 )
2019-04-02 17:01:17 -07:00
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism
Restrict pism to proj@:4 ( #11754 )
2019-06-17 18:35:03 -04:00
pixman
pixman: fix patch ( #11173 )
2019-04-15 14:49:02 +02:00
pkg-config
pkgconf
pkgconf: Add 1.6.1 ( #11863 )
2019-06-27 22:15:04 +02:00
planck-likelihood
planck-likelihood: remove -m64 on ARM ( #11902 )
2019-07-01 10:48:45 -07:00
plasma
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
platypus
plink
plplot
plumed
cp2k is now a MakefilePackage ( #10570 )
2019-02-14 07:11:20 +01:00
pmdk
PMDK package: requires ncurses dependency ( #11868 )
2019-06-28 10:15:06 -07:00
pmgr-collective
pmix
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
Updates to poppler to get pdf2svg working ( #11681 )
2019-06-15 17:32:39 -05:00
poppler-data
porta
portage
portage: add v1.2.2 ( #11842 )
2019-06-28 06:39:26 -06:00
portcullis
postgresql
postgresql package: build enhancements. ( #10877 )
2019-03-25 19:51:51 -05:00
ppl
pplacer
prank
precice
precice: add version 1.5.1 ( #11809 )
2019-06-21 07:56:35 -04:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
Add PROJ.6 ( #11730 )
2019-06-17 23:46:42 -04:00
protobuf
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
proxymngr
prrte
New package: PRRTE ( #11614 )
2019-06-18 18:47:24 -07:00
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py
add new package py-absl-py ( #11812 )
2019-06-23 17:33:36 -04:00
py-adios
py-advancedhtmlparser
py-advancedhtmlparser: new package ( #10867 )
2019-03-13 15:06:01 +01:00
py-aenum
Add py-aenum package ( #11716 )
2019-06-16 08:39:54 +02:00
py-affine
py-alabaster
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-alembic
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astor
New package py-astor (and test dependency py-astunparse) ( #11813 )
2019-06-23 17:33:22 -04:00
py-astroid
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
py-astropy
py-astunparse
New package py-astor (and test dependency py-astunparse) ( #11813 )
2019-06-23 17:33:22 -04:00
py-async-generator
py-atomicwrites
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
fixes py-basemap package ( #11104 )
2019-04-05 11:27:23 -07:00
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biomine
py-biomine: new package ( #10868 )
2019-03-13 15:17:06 +01:00
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach
py-blessed
new package/py-blessed ( #11656 )
2019-06-22 17:05:03 -05:00
py-blessings
py-bokeh
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-boltons
py-boto3
Add new package py-boto3 ( #11722 )
2019-06-16 08:44:41 +02:00
py-botocore
Add new package py-botocore ( #11720 )
2019-06-16 08:43:06 +02:00
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy
py-cartopy does not yet support PROJ.6 ( #11765 )
2019-06-17 21:35:14 -04:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-certifi: Add version 2017.4.17 ( #10828 )
2019-03-07 13:09:26 -06:00
py-cffi
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-cftime
py-chardet
py-chardet: Add version 3.0.2 ( #10827 )
2019-03-11 19:44:30 -05:00
py-checkm-genome
py-cheetah
py-click
py-click-plugins
py-cligj
Add py-cligj 0.5.0 ( #11727 )
2019-06-16 08:48:42 +02:00
py-cloudpickle
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-crossmap: new package at 0.3.3 ( #10854 )
2019-03-11 15:13:02 -05:00
py-cryptography
py-csvkit
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython
Add latest version of py-cython ( #11494 )
2019-05-23 20:01:45 -05:00
py-dask
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-dbf
py-decorator
py-deeptools
py-deeptools: adding release 3.2.1 sha256 sum ( #11174 )
2019-04-12 09:45:04 +02:00
py-dendropy
py-descartes
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-flake8: Add missing dependencies for @3.7.7 ( #10796 )
2019-03-07 12:50:30 -06:00
py-enum34
py-epydoc
py-espresso
py-espresso: added v4.0.2
2019-05-03 10:40:54 +09:00
py-espressopp
py-espressopp: add v2.0.2 ( #10909 )
2019-03-15 12:59:23 -05:00
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-filelock
py-fiona
Add py-fiona 1.8.6 ( #11736 )
2019-06-17 20:54:58 -04:00
py-fiscalyear
py-flake8
py-flake8: Add missing dependencies for @3.7.7 ( #10796 )
2019-03-07 12:50:30 -06:00
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye
py-flye: new package at 2.4.2 ( #11584 )
2019-05-29 15:37:52 -05:00
py-fn
py-fparser
py-freezegun
Add new package py-freezegun ( #11718 )
2019-06-16 08:41:27 +02:00
py-funcsigs
py-functools32
py-future
py-futures
py-fypp
py-gdbgui
py-genders
py-genshi
py-geopandas
Add py-geopandas 0.5.0 ( #11737 )
2019-06-16 08:57:13 +02:00
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-graphviz
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5glance
py-h5py
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-hdfs
py-hepdata-validator
py-hpccm
py-hpccm: New package ( #10957 )
2019-03-22 11:39:10 +01:00
py-html2text
py-html5lib
py-htseq
py-htseq: new version ( #11525 )
2019-05-21 12:08:31 -05:00
py-httpbin
py-hypothesis
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-iminuit
py-importlib
py-invoke
py-ipaddress
py-ipdb
py-ipykernel
Py-jupyter package: dependency fixes ( #10966 )
2019-03-26 15:05:39 -05:00
py-ipython
Fix py-yt for Python 2 by requesting older py-ipython version ( #11416 )
2019-05-15 04:24:52 +09:00
py-ipython-genutils
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-jmespath
Add new package py-jmespath ( #11719 )
2019-06-16 08:42:35 +02:00
py-joblib
Add latest version of joblib ( #11495 )
2019-05-19 14:17:03 -05:00
py-jprops
py-jpype
py-jsonpatch
New packages: nrm and libnrm ( #11777 )
2019-06-20 19:21:44 -07:00
py-jsonpointer
New packages: nrm and libnrm ( #11777 )
2019-06-20 19:21:44 -07:00
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
Py-jupyter package: dependency fixes ( #10966 )
2019-03-26 15:05:39 -05:00
py-jupyter-core
py-jupyter-notebook
Py-jupyter package: dependency fixes ( #10966 )
2019-03-26 15:05:39 -05:00
py-jupyterhub
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-keras
py-keras-applications
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-keras-preprocessing
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-kiwisolver
py-kmodes
Add py-kmodes package ( #11497 )
2019-05-19 14:17:30 -05:00
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble
Update libensemble to v0.5.0 ( #11544 )
2019-05-24 15:11:56 -05:00
py-line-profiler
py-linecache2
py-lit
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-llvmlite
py-llvmlite: Add versions 0.26.0 and 0.27.1 ( #10866 )
2019-03-12 19:40:01 -05:00
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-luigi
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-mappy
py-markdown
py-markdown package: update dependency version range ( #11908 )
2019-07-01 17:52:41 -07:00
py-markupsafe
py-matplotlib
py-matplotlib: Fix dependencies in [2.1.0:3.0.0) ( #11787 )
2019-06-19 17:38:04 -05:00
py-mccabe
py-mdanalysis
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
py-meep
py-memory-profiler
py-merlin
py-metasv
py-metasv: new package at 0.5.4 ( #11476 )
2019-05-17 14:33:04 -05:00
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mo-pack
New packages: libmo-unpack and py-mo-pack ( #11895 )
2019-07-01 18:24:45 -07:00
py-mock
py-modred
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-mpmath
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-multiprocess
py-multiqc
py-munch
py-mx
py-mxnet
py-myhdl
py-mysql-connector
New package: py-mysql-connector ( #10327 )
2019-03-12 20:52:43 -05:00
py-mysqldb1
Fix mysqldb1 ( #9978 )
2019-03-12 20:57:29 -05:00
py-natsort
py-nbconvert
py-nbformat
py-nc-time-axis
New package: py-nc-time-axis ( #11898 )
2019-07-01 18:07:57 -07:00
py-neo
py-nestle
py-netcdf4
py-netcdf4: depend on hdf5+hl ( #11893 )
2019-07-01 15:38:35 +02:00
py-netifaces
py-networkx
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-nose
py-nosexcover
py-numba
py-numba package: Depend on py-setuptools so an egg isn't built ( #10964 )
2019-03-26 14:42:57 -05:00
py-numexpr
py-numexpr3
py-numpy
Add py-numpy 1.16.4 ( #11726 )
2019-06-16 08:47:38 +02:00
py-numpydoc
py-olefile
py-onnx
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
py-ont-fast5-api
py-openpmd-validator
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-packaging
py-palettable
py-pandas
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-paramiko
py-partd
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pauvre
rename py-pauvr to py-pauvre ( #11437 )
2019-05-14 08:55:53 +09:00
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-petsc4py
petsc4py: add verson 3.11.0 ( #11186 )
2019-04-15 09:54:40 +02:00
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pint
py-pip
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pipits
py-pkgconfig
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-plotly
py-pluggy
py-ply
py-pmw
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-poster
py-pox
py-ppft
py-prettytable
py-progress
py-progressbar2
New package: py-progressbar2 ( #11421 )
2019-05-15 10:49:28 +09:00
py-projectq
py-prometheus-client
py-prompt-toolkit
Py-jupyter package: dependency fixes ( #10966 )
2019-03-26 15:05:39 -05:00
py-protobuf
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
py-psutil
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow
py-arrow and arrow: add version 0.12.1 ( #11004 )
2019-04-02 17:00:04 -07:00
py-pyasn1
py-pybedtools
py-pybedtools: new package at 0.6.9 ( #11475 )
2019-05-17 14:32:21 -05:00
py-pybigwig
py-pybigwig: needs curl at link time ( #10892 )
2019-03-14 11:07:50 +01:00
py-pybind11
pybind11: v2.3.0 ( #11713 )
2019-06-15 10:30:04 -05:00
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares
New package: py-pycares (starting at 3.0.0) ( #11340 )
2019-05-11 03:48:37 +09:00
py-pychecker
py-pycodestyle
py-flake8: Add missing dependencies for @3.7.7 ( #10796 )
2019-03-07 12:50:30 -06:00
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pydv
Rename py-dateutil -> py-python-dateutil ( #11717 )
2019-06-16 08:40:56 +02:00
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pygdbmi
py-pygments
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pylint
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pymatgen
py-pyminifier
py-pymol
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
New package: py-pyodbc ( #10972 )
2019-03-26 15:09:55 -05:00
py-pypar
py-pyparsing
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pypeflow
py-pyprof2html
py-pyproj
Add py-pyproj 2.2.0 ( #11735 )
2019-06-17 20:23:40 -04:00
py-pyqi
py-pyqt
py-pyrad
py-pyrosar
New package: py-pyrosar ( #11428 )
2019-05-15 10:53:30 +09:00
py-pysam
py-pysam: update ( #11377 )
2019-05-07 08:29:05 -05:00
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysocks
py-pyspark
py-pysqlite
py-pytest
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil
py-python-dateutil: Version 2.7.0 acquired dependency on setuptools-scm ( #11795 )
2019-06-20 09:18:04 -05:00
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-levenshtein
py-python-socketio
py-python-utils
New package: py-python-utils ( #11422 )
2019-05-15 10:47:28 +09:00
py-pythonqwt
py-pytorch
py-pytz
py-pytz package: add version 2018.4 ( #10959 )
2019-03-26 14:41:09 -05:00
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-queryablelist
py-advancedhtmlparser: new package ( #10867 )
2019-03-13 15:06:01 +01:00
py-radical-utils
py-ranger
py-rasterio
Add py-rasterio 1.0.24 ( #11738 )
2019-06-18 15:14:27 -04:00
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests: Add missing dependencies for versions 2.16.0 and up ( #10996 )
2019-04-10 15:38:28 -07:00
py-requests-toolbelt
py-restview
py-rope
py-rpy2
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-rsa
py-rseqc
py-rtree
py-s3transfer
Add new package py-s3transfer ( #11721 )
2019-06-16 08:43:41 +02:00
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-scikit-learn
py-scikit-learn: needs setuptools ( #11379 )
2019-05-07 13:35:32 -05:00
py-scikit-optimize
New package: py-scikit-optimize ( #10973 )
2019-03-26 15:10:35 -05:00
py-scipy
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-scoop
New package: py-scoop ( #11423 )
2019-05-15 10:50:41 +09:00
py-seaborn
py-send2trash
py-setuptools
Add latest version of setuptools ( #11493 )
2019-05-19 14:16:37 -05:00
py-setuptools-git
py-setuptools-scm
py-sfepy
Rename py-pytables -> py-tables ( #11847 )
2019-06-25 21:32:49 -04:00
py-sh
py-shapely
Add py-shapely 1.6.4.post2 ( #11739 )
2019-06-18 14:24:56 -04:00
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-sip package: Add version 4.19.3 ( #10742 )
2019-03-07 13:16:54 -06:00
py-six
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spatialist
New package: py-spatialist ( #11427 )
2019-05-15 10:52:31 +09:00
py-spectra
py-spefile
py-spglib
py-sphinx
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-sphinxautomodapi
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-tables
Rename py-pytables -> py-tables ( #11847 )
2019-06-25 21:32:49 -04:00
py-tabulate
py-tappy
py-tblib
New package: py-tblib ( #11425 )
2019-05-15 10:51:37 +09:00
py-terminado
py-testinfra
py-tetoolkit
py-tetoolkit: Add version 2.0.3 ( #10749 )
2019-02-28 12:59:30 +01:00
py-texttable
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
py-theano
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-tifffile
py-toml
py-tomopy
py-toolz
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-treehash: Create new package ( #10872 )
2019-03-13 16:03:09 -05:00
py-tuiview
py-twisted
py-typesentry
new python package/py-typesentry ( #11657 )
2019-06-11 14:33:43 -04:00
py-typing
Added setuptools to receipe ( #11463 )
2019-05-15 12:19:04 +02:00
py-typing-extensions
LBANN: add support for new python front end ( #11395 )
2019-05-15 06:20:00 +09:00
py-tzlocal
py-udunits
py-umi-tools
py-umi-tools: Add latest versions ( #11256 )
2019-04-23 18:23:44 +09:00
py-unicycler
py-unicycler: new package ( #7727 )
2019-02-25 09:44:05 +01:00
py-unittest2
py-unittest2py3k
py-urllib3
py-urllib3: Add version 1.21.1 ( #10826 )
2019-03-11 19:44:07 -05:00
py-urwid
py-vcversioner
py-virtualenv
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-warlock
New packages: nrm and libnrm ( #11777 )
2019-06-20 19:21:44 -07:00
py-wcsaxes
py-wcwidth
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xdot
py-xenv
Gaudi package: new version + xenv bugfix ( #10668 )
2019-02-21 19:04:03 -06:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xopen: Add version 0.5.0 ( #10995 )
2019-03-26 15:32:09 -05:00
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
Fix py-yt for Python 2 by requesting older py-ipython version ( #11416 )
2019-05-15 04:24:52 +09:00
py-ytopt
py-zmq
py-zope-event
py-zope-interface
pythia6
pythia6: fix input verification issue and example data checksum. ( #10563 )
2019-02-13 23:17:46 -06:00
python
added tix package and python variant for tix ( #11599 )
2019-06-06 17:19:24 -04:00
qbank
qbox
qca
qhull
qjson
qmcpack
QMCPACK Update May 2019 ( #11492 )
2019-05-18 22:57:52 -05:00
qmd-progress
qorts
qrupdate
qt
fix qt build on gcc8.3 ( #11633 )
2019-06-08 13:09:16 -04:00
qt-creator
various package version updates and build fixes ( #10775 )
2019-03-05 11:59:47 -08:00
qtgraph
OpenSpeedShop/CBTF package updates and fixes ( #11470 )
2019-05-16 18:19:55 -07:00
qthreads
qthreads package: make hwloc dependency optional and add version 1.14 ( #11780 )
2019-06-28 11:43:06 -07:00
quantum-espresso
elpa: override headers prop for common include-dir localization
2019-05-10 03:43:02 +09:00
quinoa
qwt
r
R: add version 3.6.0
2019-05-02 08:34:00 +09:00
r3d
r3d: add version 2018-01-07 ( #11770 )
2019-06-18 09:36:49 -05:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beanplot
r-bfast
r-bfast: new package at 1.5.7 ( #10733 )
2019-03-01 10:17:37 -06:00
r-bfastspatial
r-bfastspatial: new package at 0.6.2 ( #10734 )
2019-03-01 10:18:14 -06:00
r-bglr
r-bglr: new package at 1.0.8 ( #11489 )
2019-05-17 14:35:38 -05:00
r-bh
r-bh: add 1.69.0-1 ( #11435 )
2019-05-14 08:56:14 +09:00
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-caret
r-caroline
r-caroline: new package at 0.7.6 ( #11450 )
2019-05-14 15:57:33 -05:00
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-clipr
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat
r-commonmark
r-commonmark: new package at 1.7 ( #11049 )
2019-04-02 17:22:42 -07:00
r-complexheatmap
r-compositions
r-construct
r-construct: new package at 1.0.3 ( #11452 )
2019-05-14 16:24:01 -05:00
r-convevol
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-crul
r-crul: new package at 0.7.4 ( #11459 )
2019-05-15 15:51:11 -05:00
r-ctc
r-cubature
r-cubist
r-curl
r-curl: add 3.3 ( #11456 )
2019-05-15 15:47:45 -05:00
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-desc
r-desc: new package at 1.2.0 ( #11048 )
2019-04-02 17:10:24 -07:00
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-edger
r-ellipse
r-emmli
r-emmli: new package ( #11557 )
2019-05-26 20:43:22 -05:00
r-energy
r-ensembldb
r-ergm
r-evaluate
r-expint
r-expm
r-factoextra
r-factominer
r-fansi
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gcrma
r-gdalutils
r-gdalutils: new package at 2.0.1.14 ( #10731 )
2019-03-01 09:53:30 -06:00
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph
r-geomorph: new version ( #11556 )
2019-05-26 23:34:17 -05:00
r-geonames
r-geonames: new package at 0.999 ( #11455 )
2019-05-15 16:04:50 -05:00
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-gwmodel
New package: r-gwmodel (starting at 2.0-9) ( #11887 )
2019-07-01 18:14:29 -07:00
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-hoardr
r-hoardr: new package at 0.5.2 ( #11051 )
2019-04-02 17:28:05 -07:00
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode
r-httpcode: new package at 0.2.0 ( #11454 )
2019-05-15 15:50:32 -05:00
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-intervals
r-intervals: new package at 0.15.1 ( #11884 )
2019-06-28 19:42:55 -04:00
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-isdparser
r-isdparser: new package at 0.3.0 ( #11460 )
2019-05-15 15:51:50 -05:00
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-loo
r-loo: new package at 2.1.0 ( #11448 )
2019-05-14 16:22:29 -05:00
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv
r-nleqslv: new package at 3.3.2 ( #10696 )
2019-02-26 12:19:48 -06:00
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-nortest
r-nortest: new package at 1.0-4 ( #10729 )
2019-03-01 09:55:30 -06:00
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-optparse
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phylostratr
r-phylostratr: new package ( #11053 )
2019-05-15 16:03:36 -05:00
r-phytools
r-picante
r-pillar
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-pkgbuild
r-pkgbuild: new package at 1.0.3 ( #11046 )
2019-04-02 17:09:59 -07:00
r-pkgconfig
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-pkgload
r-pkgload: new package at 1.0.2 ( #11047 )
2019-04-02 17:21:55 -07:00
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-popgenome
r-popvar
r-popvar: new package at 1.2.1 ( #11490 )
2019-05-17 14:45:21 -05:00
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-qtl
r-qtl: new package at 1.44-9 ( #11487 )
2019-05-17 14:33:42 -05:00
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomfields
r-randomfieldsutils
r-randomforest
r-randomglm
r-randomglm: new package at 1.02-1 ( #11589 )
2019-05-30 13:35:01 -05:00
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgdal does not yet support PROJ.6 ( #11766 )
2019-06-17 23:47:52 -04:00
r-rgenoud
r-rgeos
r-rgl
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhmmer
r-rhmmer: new package at 0.1.0 ( #11050 )
2019-04-02 17:25:55 -07:00
r-rhtslib
r-rinside
r-rinside package: add version 0.2.15 ( #10949 )
2019-03-26 14:37:49 -05:00
r-rjags
r-rjava
rJava package: add version 0.9-11 ( #11334 )
2019-05-04 03:45:35 +09:00
r-rjson
r-rjsonio
r-rlang
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rmysql: add 0.10.17, mariadb-connector-c dependency ( #11044 )
2019-05-15 15:58:15 -05:00
r-rngtools
r-rnoaa
r-rnoaa: new package at 0.8.4 ( #11461 )
2019-05-15 15:52:17 -05:00
r-robust
r-robustbase
r-rocr
r-rodbc
r-rots
r-roxygen2
r-roxygen2 package: added 6.1.1, more dependencies ( #11045 )
2019-04-02 17:27:04 -07:00
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup
r-rrblup: new package at 4.6 ( #11488 )
2019-05-17 14:34:33 -05:00
r-rrcov
r-rrpp
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstan: add 2.18.2 ( #11447 )
2019-05-14 16:23:14 -05:00
r-rstantools
r-rstantools: new package at 1.5.1 ( #11451 )
2019-05-14 15:57:54 -05:00
r-rstudioapi
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sf may not support PROJ.6 ( #11767 )
2019-06-23 11:35:33 -05:00
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-spacetime
r-spacetime: new package at 1.2-2 ( #11885 )
2019-07-01 13:39:15 -04:00
r-sparsem
r-spatial
r-spatial: new package at 7.3-11 ( #10728 )
2019-03-01 09:57:59 -06:00
r-spatialreg
New package: r-spatialreg (starting at 1.1-3) ( #11886 )
2019-07-01 18:13:06 -07:00
r-spdata
New package: r-spdata (starting at version 0.3.0) ( #11883 )
2019-07-01 18:11:16 -07:00
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squash
r-sseq
r-stanheaders
r-stanheaders: add 2.18.1 ( #11446 )
2019-05-14 15:18:03 -05:00
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-taxizedb
r-taxizedb: new package at 0.1.4 ( #11052 )
2019-05-15 16:02:54 -05:00
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-triebeard
r-triebeard: new package at 0.3.0 ( #11457 )
2019-05-15 15:48:17 -05:00
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-urltools
r-urltools: new package at 1.7.3 ( #11458 )
2019-05-15 15:48:54 -05:00
r-utf8
Package Updates for ECP CANDLE Supervisor ( #10760 )
2019-03-01 14:46:13 -06:00
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vfs
r-vfs: new package at 1.0.2 ( #10697 )
2019-02-26 12:21:12 -06:00
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-wgcna
r-whisker
r-withr
r-withr: add 2.1.2 ( #11445 )
2019-05-14 15:17:25 -05:00
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xtable
r-xts
r-xts: add 0.11-2 ( #10730 )
2019-03-01 09:54:26 -06:00
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
racon: Add versions 1.3.2 and 1.3.1 ( #10980 )
2019-03-22 11:19:13 +01:00
raft
ragel
raja
Fix CMake versions dependencies in RAJA package ( #11440 )
2019-05-16 13:54:52 +02:00
randfold
random123
Provide a patched version of random123 that will work on ARM platforms ( #11388 )
2019-05-08 08:38:47 -06:00
randrproto
range-v3
range-v3: New versions 0.3.7, 0.4.0, 0.5.0. ( #11358 )
2019-05-03 09:13:50 +02:00
rankstr
rapidjson
"Werror" too strict for recent compilers ( #10802 )
2019-03-12 20:10:51 -05:00
ravel
raxml
ray
rclone
Ensure proper gopath set for rclone ( #11755 )
2019-06-18 10:49:07 -07:00
rdma-core
rdp-classifier
re2c
readfq
readline
recon
recon: new package at 1.08 ( #11408 )
2019-05-15 15:55:10 -05:00
recordproto
redis
redis: new package ( #10915 )
2019-03-16 14:47:11 +01:00
redset
redundans
regcm
Revert to manual flag enabling, due to RegCM bug in configure. ( #10863 )
2019-03-12 19:48:45 -05:00
relax
Add Gaudi and RELAX packages ( #9194 )
2019-02-13 23:04:38 -06:00
relion
RELION package: add version 3.0.6 ( #11851 )
2019-06-26 09:57:14 -07:00
rempi
rename
rendercheck
renderproto
repeatmasker
repeatmasker: perl and HMMER dependency fixes ( #11660 )
2019-06-18 11:11:00 -07:00
repeatmodeler
repeatmodeler: new package at 1.0.11 ( #11472 )
2019-05-17 14:31:26 -05:00
repeatscout
repeatscout: new package at 1.0.5 ( #11409 )
2019-05-15 16:04:17 -05:00
resourceproto
revbayes
Revbayes update ( #11559 )
2019-05-30 13:23:32 -04:00
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb
rockstar
rodinia
New package: Rodinia (starting at 3.1) ( #11650 )
2019-06-24 18:32:46 -07:00
root
Buildcache relocate.py error fix ( #11616 )
2019-06-04 14:39:04 -05:00
rose
ROSE: add version 0.9.10.0, update to Autotools, add variants ( #9484 )
2019-05-29 12:00:50 -07:00
ross
ross package: add version 7.0.1 ( #11078 )
2019-04-02 17:50:41 -07:00
routino
new package: routino ( #10679 )
2019-02-26 18:41:44 -06:00
rpcsvc-proto
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
rr
rsbench
rsem
update package rsem ( #10813 )
2019-03-06 14:57:54 +01:00
rstart
rsync
rtags
rtax
ruby
ruby: Install certificate for +openssl only ( #11184 )
2019-04-17 13:03:58 -05:00
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
Added rust 1.34.0 ( #11200 )
2019-04-16 18:32:11 -05:00
rust-bindgen
sabre
saga-gis
PROJ.6 not yet supported in SAGA-GIS ( #11768 )
2019-06-17 21:39:05 -04:00
sailfish
salmon
sambamba
samblaster
samrai
samtools
samtools package: Add version 1.5 and htslib 1.5 dependency ( #10825 )
2019-03-11 19:29:29 -05:00
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop
scalpel
scan-for-matches
scons
scons: add version 3.0.5 ( #11709 )
2019-06-14 16:39:58 -05:00
scorec-core
scorep
Update scorep and friends ( #11523 )
2019-05-21 12:28:12 +02:00
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sdsl-lite
seacas
seacas: Update NetCDF version requirement ( #10787 )
2019-03-05 14:05:52 +01:00
sed
sentieon-genomics
seqan
seqprep
seqtk
seqtk package: Add version 1.3 ( #10743 )
2019-03-07 13:16:20 -06:00
serf
various package version updates and build fixes ( #10775 )
2019-03-05 11:59:47 -08:00
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid
update license date range for simgrid
2019-05-10 04:37:56 +09:00
simplemoc
simul
simulationio
singularity
Singularity package: add version 3.2.1 ( #11833 )
2019-06-24 18:20:23 -07:00
singularity-legacy
Singularity package: new version, legacy builds, and root permissions ( #11094 )
2019-05-03 10:27:13 +09:00
sirius
elpa: override headers prop for common include-dir localization
2019-05-10 03:43:02 +09:00
skilion-onedrive
sl
New Package: sl ( #11565 )
2019-05-26 20:40:55 -05:00
slate
SLATE package: fix variant/header errors ( #11353 )
2019-05-07 02:52:40 +09:00
sleef
slepc
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
slurm
slurm: Add PMI support ( #10683 )
2019-02-25 13:05:31 -06:00
smalt
smof
smof: new package at 2.13.1 ( #11502 )
2019-05-17 14:44:35 -05:00
smproxy
snakemake
snap
snap: overwrite flags ( #10832 )
2019-03-07 14:53:04 -07:00
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
span-lite
Update optional-lite and span-lite to use CMakePackage ( #11407 )
2019-05-20 13:04:06 -05:00
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite
sqlite: add versions; restore old versions; variant resolves security issues. ( #11336 )
2019-05-11 02:58:23 +09:00
sqlitebrowser
squashfs
squashfs should depend_on('zlib') ( #11265 )
2019-04-24 09:01:36 +09:00
squid
sra-toolkit
sra-toolkit new version ( #11111 )
2019-04-08 08:56:49 +02:00
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
stacks package: add version 2.3b ( #10653 )
2019-02-22 19:16:44 -06:00
staden-io-lib
star
STAR: Add versions 2.7.0d and 2.7.0e ( #10831 )
2019-03-11 19:44:54 -05:00
star-ccm-plus
startup-notification
stat
various package version updates and build fixes ( #10775 )
2019-03-05 11:59:47 -08:00
stata
stc
swift-t: New release packages for 1.4.3 ( #11684 )
2019-06-14 09:49:51 -05:00
steps
stow
strace
strace: add 5.0 ( #10940 )
2019-03-20 04:48:13 +01:00
stream
strelka
stress
string-view-lite
Update optional-lite and span-lite to use CMakePackage ( #11407 )
2019-05-20 13:04:06 -05:00
stringtie
structure
strumpack
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
sublime-text
sublime-text: Miscellaneous improvements ( #11154 )
2019-04-17 13:44:34 -07:00
subread
subread: add 1.6.4 ( #11800 )
2019-06-20 13:54:20 -05:00
subversion
suite-sparse
fix suite-sparse built with tbb from intel-parallel-studio ( #11134 )
2019-05-15 11:03:19 -07:00
sumaclust
sundials
sundials: add new version (4.1.0) ( #10890 )
2019-03-14 11:00:22 +01:00
superlu
superlu-dist
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
superlu-mt
supernova
Supernova package: add version 2.1.1 ( #11285 )
2019-05-01 09:56:53 +09:00
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig
symengine
symengine: add 0.4.0, fix dependency in dealii ( #11473 )
2019-05-16 12:23:21 +02:00
sympol
sz
tabix
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian
xsdk: add/update maintainers to xsdk packages ( #11146 )
2019-04-18 08:20:22 -05:00
tassel
tau
Package/tau/tau 2.28.1 update ( #11591 )
2019-05-31 10:01:19 -05:00
tcl
added tix package and python variant for tix ( #11599 )
2019-06-06 17:19:24 -04:00
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tcsh: change the download url, add version 6.21.00 ( #11836 )
2019-06-27 12:53:43 -04:00
tealeaf
templight
templight-tools
tetgen
tethex
remove myself from maintainers of some packages ( #11319 )
2019-04-30 10:16:53 +02:00
texinfo
texlive
update to texlive 2019 ( #11365 )
2019-05-09 13:47:43 -05:00
tfel
Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). ( #11109 )
2019-04-08 09:09:14 +02:00
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
thrust: add versions 1.9.0-1.9.4 ( #10823 )
2019-03-07 14:36:59 +01:00
tig
time
Download GNU packages from mirrors (Part 2) ( #10555 )
2019-02-20 09:08:42 -06:00
tinyxml
tinyxml2
tioga
tix
added tix package and python variant for tix ( #11599 )
2019-06-06 17:19:24 -04:00
tk
tk: avoid search for X headers and libraries ( #11892 )
2019-07-01 13:47:04 -04:00
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder
transdecoder package: Add version 5.5.0 and fix up url and installation paths ( #10745 )
2019-03-06 20:58:50 -06:00
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos
dtk@develop now requires 'submodules=True' flag ( #11694 )
2019-06-14 11:04:48 -05:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore
trimgalore: Add versions 0.6.0 and 0.6.1 ( #10981 )
2019-03-22 11:18:45 +01:00
trimmomatic
trimmomatic package: restrict java dependency to version 8 ( #10741 )
2019-03-07 13:49:57 -06:00
trinity
trinotate
trnascan-se
turbine
swift-t: New release packages for 1.4.3 ( #11684 )
2019-06-14 09:49:51 -05:00
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx
UCX package: add versions 1.5.1/1.5.2 ( #11832 )
2019-06-24 18:21:06 -07:00
udunits2
ufo-core
ufo-filters
umpire
Update Umpire package with new versions ( #11441 )
2019-05-18 23:04:12 -05:00
unblur
uncrustify
unibilium
unifycr
unifycr: dependency changes and new version ( #10722 )
2019-03-06 10:56:20 -08:00
unison
units
unittest-cpp
Add support for new unittest-cpp package ( #11575 )
2019-05-28 15:21:24 -05:00
unixodbc
unuran
unzip
usearch
util-linux
build fixes for util-linux ( #10811 )
2019-03-06 11:04:53 -08:00
util-macros
new package: kitty terminal ( #9621 )
2019-04-18 08:53:52 +02:00
uuid
uvw
uvw: new package ( #10645 )
2019-02-20 13:53:07 +01:00
valgrind
vampirtrace
vampirtrace: patch for new mpich and openmpi versions ( #10665 )
2019-02-26 18:48:14 -06:00
vardictjava
varscan
varscan: set VARSCAN_HOME variable to jar file location ( #10744 )
2019-03-12 20:29:48 -05:00
vc
vcftools
vcsh
vdt
vdt: Add version 0.4.3 ( #10982 )
2019-03-22 11:57:30 +01:00
vecgeom
Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant ( #10518 )
2019-02-13 22:51:26 -06:00
veclibfort
vegas2
veloc
veloc package: add version 1.1 and update master dependencies ( #11270 )
2019-05-01 09:44:51 +09:00
velvet
verilator
verilator: Fix FlexLexer.h not found ( #11185 )
2019-04-15 09:56:07 +02:00
verrou
videoproto
viennarna
viewres
vigra
vim
virtualgl
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk
vtk, paraview, catalyst packages: Add maintainers ( #11774 )
2019-06-19 10:57:19 -07:00
vtkh
vtkm
vtkm: fix the directory cmake looks for the source code ( #11576 )
2019-05-29 11:10:12 -04:00
wannier90
warpx
Resources: use expanded archive name by default ( #11688 )
2019-06-20 11:09:31 -07:00
wcslib
wget
wget: add version 1.20.3 ( #11148 )
2019-04-09 18:37:04 -05:00
wgsim
windowswmproto
wireshark
wordnet
workrave
wt
wtdbg2
wtdbg2: new package ( #10639 )
2019-02-27 13:27:45 -06:00
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-wm: add m4 build system dependency ( #11056 )
2019-04-04 13:11:02 +02:00
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfd package: use Spack-installed libintl ( #11545 )
2019-06-19 10:54:50 -07:00
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
new package: kitty terminal ( #9621 )
2019-04-18 08:53:52 +02:00
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
mesa: re-written to new meson build system ( #10482 )
2019-05-01 17:57:33 -05:00
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
Xrootd: set PYTHON_EXECUTABLE with +python variant ( #11581 )
2019-05-29 15:41:30 -05:00
xrx
xsbench
xscope
xsd
xsdk
xsdk@0.4.0: update dealii defaults wrt changes in a973ab475
( #11562 )
2019-05-26 10:43:06 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xtensor package: add version 0.20.7 and update dependencies ( #11574 )
2019-06-18 17:05:47 -07:00
xsm
xstdcmap
xtensor
xtensor package: add version 0.20.7 and update dependencies ( #11574 )
2019-06-18 17:05:47 -07:00
xtensor-python
xtensor package: add version 0.20.7 and update dependencies ( #11574 )
2019-06-18 17:05:47 -07:00
xterm
xtl
xtensor package: add version 0.20.7 and update dependencies ( #11574 )
2019-06-18 17:05:47 -07:00
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xxhash: edit prefix in Makefile for macOS ( #10606 )
2019-02-20 10:55:09 +01:00
xz
Python: optional dependencies and post-installation tests ( #10335 )
2019-02-23 12:36:26 -06:00
yajl
yambo
yaml-cpp
Make yaml-cpp build with libc++ ( #10504 )
2019-06-26 14:29:09 -07:00
yara
added yara ( #10901 )
2019-03-20 04:55:02 +01:00
yasm
yorick
z3
zeromq
zfp
zfp: Add 0.5.4 ( #11016 )
2019-04-08 09:11:28 +02:00
zip
zlib
zoltan
Packages/zoltan ( #10432 )
2019-03-23 13:38:29 +01:00
zsh
zstd
zstd: Add 1.4.0 ( #11208 )
2019-04-17 09:29:52 -05:00