spack/var/spack/repos/builtin/packages
Mark Olesen 5fd3b5acda openfoam: rename openfoam-com to openfoam (#11876)
The original packaging, with openfoam as a virtual and with
openfoam-com, openfoam-org and openfoam-extend as
providers, adds an obfuscation layer without any benefit.

- Rename `openfoam-com` to `openfoam`, and remove the 
  `openfoam` virtual package.
2019-07-01 22:54:36 -07:00
..
abinit
abyss
accfft
ack
activeharmony
acts-core ACTS package: add versions including 0.10.1 (#11606) 2019-06-18 11:00:02 -07:00
adept-utils
adios
adios2 ADIOS2: v2.4.0 (#11904) 2019-07-01 13:47:31 -04:00
adlbx swift-t: New release packages for 1.4.3 (#11684) 2019-06-14 09:49:51 -05:00
adol-c
aegean
aida
alan alan: new package at 2.1.1 (#11593) 2019-05-30 17:50:14 -05:00
albany
albert
alglib
allinea-reports
allpaths-lg
alquimia xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
alsa-lib
aluminum Update lbann sw stack dependencies (#10579) 2019-02-13 11:19:15 -08:00
amber New package: amber (starting at v16) (#11619) 2019-06-18 19:01:03 -07:00
amg AMG: update version (#11099) 2019-04-03 11:11:06 -06:00
amg2013
aml Adds the aml memory management library. (#11590) 2019-05-30 16:01:28 -05:00
amp
ampliconnoise
amrex xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
amrvis
andi
angsd
ant
antlr
ants
aoflagger Aoflagger: a new package. (#10840) 2019-03-12 19:59:24 -05:00
aom update aom package license 2019-05-10 04:37:56 +09:00
ape
aperture-photometry
apex Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx New package: ArborX (#11474) 2019-06-18 19:14:05 -07:00
archer
argobots Add margo package and add rc1 tag for argobots package (#11281) 2019-05-01 09:47:34 +09:00
argp-standalone
argtable
arlecore
arm-forge arm-forge: add all available versions (#11198) 2019-05-03 08:14:25 -07:00
armadillo
arpack-ng arpack-ng package: add version 3.7.0 (#11041) 2019-04-02 17:08:16 -07:00
arrow py-arrow and arrow: add version 0.12.1 (#11004) 2019-04-02 17:00:04 -07:00
ascent Remove version from py-mpi4py. (#11587) 2019-06-17 10:59:34 -04:00
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli Update remaining packages to use Stage.source_path (#11662) 2019-06-12 17:07:47 -07:00
assimp
astra
astral astral: add 5.6.1 (#11195) 2019-04-17 09:32:50 -05:00
astyle remove myself from maintainers of some packages (#11319) 2019-04-30 10:16:53 +02:00
at-spi2-atk
at-spi2-core
atk
atlas
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autofact autofact: fix dependency (#10818) 2019-03-07 13:51:40 -06:00
autogen
automaded
automake automake package: add version 1.13.4 (#10662) 2019-02-22 18:38:00 -06:00
awscli awscli: new package (#11796) 2019-06-23 14:54:48 -04:00
axel
axl
bamdst Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel build env: simplify handling of parallel jobs (#11524) 2019-05-24 11:45:22 -07:00
bbcp
bbmap
bc
bcftools
bcl2fastq2 Update remaining packages to use Stage.source_path (#11662) 2019-06-12 17:07:47 -07:00
bdftopcf
bdw-gc
bear
beast1 beast1 package: add version 1.10.4, use url_for_version (#11009) 2019-03-26 15:39:42 -05:00
beast2 beast2 package: add version 2.5.2 (#10723) 2019-02-26 18:38:21 -06:00
beast-tracer beast-tracer: new package at 1.7.1 (#10652) 2019-02-22 19:22:30 -06:00
bedops bedops: avoid static linking with glibc (#10456) 2019-03-01 10:17:01 -06:00
bedtools2
beforelight
benchmark Add Google Benchmark version 1.5.0 (#11626) 2019-06-04 22:53:07 -05:00
berkeley-db
bertini
bib2xhtml bib2xhtml: replace version and change the download url (#11837) 2019-06-28 11:03:54 -07:00
bigreqsproto
binutils
bioawk
biobloom
biopieces
bismark
bison
bitmap
blasr
blasr-libcpp
blast2go blast2go: new package at 5.2.5 (#10725) 2019-03-01 12:36:00 -06:00
blast-legacy blast-legacy: new package at 2.2.26 (#10610) 2019-03-01 10:14:37 -06:00
blast-plus blast-plus package: remove --with-64 on ARM. (#11877) 2019-06-28 10:11:04 -07:00
blat
blaze
blis
bliss
blitz
bmake
bmi add BMI package (#11310) 2019-05-03 09:11:31 +02:00
bml bml: add v1.3.1 (#11856) 2019-06-27 10:57:09 -06:00
bohrium
bolt
bookleaf-cpp
boost boost: add variant for symbol visibility (#11801) 2019-06-20 17:43:25 -04:00
boostmplcartesianproduct
bowtie bowtie: Add missing zlib dependency (#10984) 2019-03-22 11:17:16 +01:00
bowtie2 added checksum for new bowtie2 version (#10930) 2019-03-19 15:14:25 +01:00
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson branson: fix install (#11093) 2019-04-02 16:44:46 -06:00
breakdancer
breseq breseq package: Add version 0.33.2 and zlib dependency (#10747) 2019-03-08 20:57:00 -06:00
bridger bridger: new package at 2014-12-01 (#10611) 2019-03-01 10:09:23 -06:00
brigand
brotli Nix package: update dependencies (#10646) 2019-03-07 13:32:55 -06:00
bsseeker2 bsseeker2 package: Add versions 2.1.8 and 2.1.5 (#10748) 2019-03-06 20:55:06 -06:00
bucky
bumpversion
busco
butter
bwa
bwtool
byobu
bzip2
c-blosc c-blosc package: add version 1.16.3 (#11014) 2019-03-26 15:40:24 -05:00
c-lime
cabana cabana: cuda backend (#10660) 2019-03-18 14:02:28 -06:00
caffe
cairo
cairomm
caliper Update caliper package (#10750) 2019-03-12 20:28:13 -05:00
callpath
camellia camellia: fix hdf5 dependency (#11810) 2019-07-01 13:40:53 -04:00
candle-benchmarks
cantera cantera: make sundials dependency optional (#10764) 2019-03-05 19:58:00 +01:00
canu canu: Add versions 1.8 and 1.7 (#10978) 2019-03-22 11:27:36 +01:00
cap3
capstone
cardioid
cares
casacore casacore does not support fftw+mpi . (#10839) 2019-03-12 19:59:48 -05:00
cask
casper
catalyst vtk, paraview, catalyst packages: Add maintainers (#11774) 2019-06-19 10:57:19 -07:00
catch Catch: 2.8.0 (#11570) 2019-05-28 15:24:18 -05:00
cbench
cblas
cbtf OpenSpeedShop/CBTF package updates and fixes (#11470) 2019-05-16 18:19:55 -07:00
cbtf-argonavis OpenSpeedShop/CBTF package updates and fixes (#11470) 2019-05-16 18:19:55 -07:00
cbtf-argonavis-gui OpenSpeedShop/CBTF package updates and fixes (#11470) 2019-05-16 18:19:55 -07:00
cbtf-krell cbtf-krell: fixed to build on ARM. (#11859) 2019-06-27 11:55:15 +02:00
cbtf-lanl OpenSpeedShop/CBTF package updates and fixes (#11470) 2019-05-16 18:19:55 -07:00
ccache
ccfits New package: CCfits (#11262) 2019-05-07 03:58:29 +09:00
cctools
cdbfasta
cdd
cddlib
cdecimal Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
cdhit cdhit - add new release 4.8.1 checksum (#11130) 2019-04-09 10:33:07 +02:00
cdo cdo: Remove obsolete patch (#11854) 2019-06-26 19:36:41 -05:00
ceed [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
cereal
ceres-solver
cfitsio
cgal cgal: add version 4.13 2019-04-18 19:31:08 -07:00
cgm
cgns cgns package: add version 3.4.0 and update hdf5 dependency (#10803) 2019-03-11 19:43:16 -05:00
channelflow
chapel Added a package for chapel. (#11002) 2019-03-24 17:18:19 -05:00
charliecloud add charliecloud-0.9.10 (#11471) 2019-06-13 16:50:55 -05:00
charmpp Update remaining packages to use Stage.source_path (#11662) 2019-06-12 17:07:47 -07:00
chatterbug
check
chill New packages: Chill and IEGenLib (#11406) 2019-06-27 13:41:06 -07:00
chlorop
chombo
chrpath
cinch Added Cinch Spackage (#11759) 2019-06-18 16:45:58 -05:00
circos
cistem
citcoms
cityhash
clamav Fix pkgconfig dependencies (#11864) 2019-06-27 14:56:42 +02:00
clamr
clapack
claw Add version 1.2.2 and 1.2.3 to the package (#11748) 2019-06-17 16:03:26 +02:00
cleaveland4
cleverleaf
clfft
clhep Update remaining packages to use Stage.source_path (#11662) 2019-06-12 17:07:47 -07:00
clingo
cln New package: CLN library (#11167) 2019-04-16 16:03:51 -07:00
cloc
cloog
cloverleaf cloverleaf: overwrite flags (#10829) 2019-03-07 14:08:36 -07:00
cloverleaf3d cloverleaf3d: overwrite flags (#10830) 2019-03-07 14:08:52 -07:00
clp
clustalo
clustalw
cmake Remove gnutls dependency and disable openssl when appropriate (#11646) 2019-06-10 11:19:26 -04:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator Cnvnator: a new package. (#8959) 2019-02-13 11:15:00 +01:00
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
connect-proxy connect-proxy: new package (#10635) 2019-02-19 11:30:09 +01:00
constype
converge
coreutils
corset
cosmomc
cosp2
cotter New package: cotter (#10838) 2019-03-11 19:46:40 -05:00
cowsay cowsay: new package (#11743) 2019-06-16 17:29:25 +02:00
cp2k elpa: override headers prop for common include-dir localization 2019-05-10 03:43:02 +09:00
cppad
cppcheck Add cppcheck version 1.87. (#11536) 2019-05-22 18:52:48 -05:00
cppgsl
cpprestsdk
cppunit cppunit: New version 1.14.0. (#11359) 2019-05-03 09:12:22 +02:00
cppzmq
cpu-features
cpuinfo
cquery cquery: new package (#10636) 2019-02-19 11:30:41 +01:00
cram
cryptopp
cscope
csdp
ctffind
cub
cube Update scorep and friends (#11523) 2019-05-21 12:28:12 +02:00
cubelib Update scorep and friends (#11523) 2019-05-21 12:28:12 +02:00
cubew Update scorep and friends (#11523) 2019-05-21 12:28:12 +02:00
cuda Update remaining packages to use Stage.source_path (#11662) 2019-06-12 17:07:47 -07:00
cuda-memtest
cudnn LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
cufflinks
cups
curl cURL package: add gssapi option (#11344) 2019-05-04 05:43:56 +09:00
cvs
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime Darshan 3.1.7 and develop versions fpr darshan-runtime and darshan-util (#11269) 2019-05-01 09:42:32 +09:00
darshan-util Darshan 3.1.7 and develop versions fpr darshan-runtime and darshan-util (#11269) 2019-05-01 09:42:32 +09:00
dash
datamash
dataspaces
dateutils dateutils: new package (#11623) 2019-06-08 13:32:57 -07:00
davix
dbcsr
dbus new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
dcmtk
dd4hep Add a DD4hep package (#9208) 2019-02-13 22:58:27 -06:00
dealii dealii: add 9.1.1 (#11573) 2019-05-28 15:22:39 -05:00
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign-tx
diamond
diffsplice
diffutils Download GNU packages from mirrors (Part 2) (#10555) 2019-02-20 09:08:42 -06:00
direnv
discovar
discovardenovo
dislin mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
draco Draco: add variants (#10925) 2019-03-19 08:49:30 -06:00
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst dyninst: rework the cmake args for version 10.1 and later (#11484) 2019-05-18 23:00:48 -05:00
dysco New package: dysco (#10767) 2019-03-06 20:25:06 -06:00
ea-utils
easybuild
ebms
eccodes
ecflow Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
eclipse-gcj-parser
ecp-io-sdk New Packages: ecp-io-sdk and ecp-viz-sdk (#11073) 2019-04-10 16:18:05 -07:00
ecp-proxy-apps ecp-proxy-apps: update version (#11119) 2019-04-06 15:33:29 -07:00
ecp-viz-sdk New Packages: ecp-io-sdk and ecp-viz-sdk (#11073) 2019-04-10 16:18:05 -07:00
ed
editline Nix package: update dependencies (#10646) 2019-03-07 13:32:55 -06:00
editres
eigen add eigen v3.3.7 (#10955) 2019-03-21 12:16:26 -05:00
elasticsearch
elemental
elfutils Elfutils package: add m4 dependency and version 0.176 (#10834) 2019-03-12 17:35:59 -05:00
elk Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
elmer-fem New package: elmer-fem (#10860) 2019-03-25 19:47:15 -05:00
elpa elpa: override headers prop for common include-dir localization 2019-05-10 03:43:02 +09:00
elsd
elsdc
elsi New Package: ELSI (#11605) 2019-06-18 18:30:57 -07:00
emacs
ember remove binary file that got added inadvertently via #11828 (#11848) 2019-06-25 21:31:36 -04:00
emboss
energyplus
entrezdirect
environment-modules environment-modules: add version 4.2.4 (#11307) 2019-04-27 20:32:57 +02:00
eospac eospac package: replace md5 checksums with sha256 (#11757) 2019-06-18 19:20:35 -07:00
eqr Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
er
erfa New package: erfa (#10763) 2019-03-05 17:40:39 -06:00
erne
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exmcutils swift-t: New release packages for 1.4.3 (#11684) 2019-06-14 09:49:51 -05:00
exodusii
exonerate exonerate use autotools. (#11805) 2019-06-21 07:55:29 -04:00
expat
expect
express
extrae
exuberant-ctags
eztrace
f18
f90cache f90cache: change the download url (#11838) 2019-06-27 12:55:48 -04:00
fabtests Mercury package: add version 1.0.1 and update dependencies (#10906) 2019-04-20 15:03:18 -07:00
falcon
faodel FAODEL: Add FAODEL package to spack (#11323) 2019-05-06 13:44:32 -04:00
fast-global-file-status
fasta
fastjar
fastmath Update FASTMath metapackage (#11171) 2019-04-12 16:54:19 -05:00
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics fenics, llvm: Fix package names being overriden (#11879) 2019-06-28 15:59:19 +02:00
fermi
fermikit
fermisciencetools
ferret
ffmpeg ffmpeg package: add aom support (#11210) 2019-05-02 03:33:03 +09:00
fftw
fgsl New package: fgsl: fortran interface to GSL (#11775) 2019-06-19 10:59:11 -07:00
figtree
fimpute
findutils
fio fio package: add optional libaio dependency (#11083) 2019-04-02 18:21:45 -07:00
fish
fixesproto
flac
flang
flann
flash
flatbuffers
flatcc
flecsale
flecsi added min version for gasnet and legion (#11853) 2019-06-26 14:46:18 -06:00
flex flex: Apply 2.6.4 patch regardless of gcc version (#10841) 2019-03-11 15:12:28 -05:00
flint
flit
fltk
flux-core add pkgconfig as dependence for flux packages (#11036) 2019-04-01 18:33:55 +02:00
flux-sched add pkgconfig as dependence for flux packages (#11036) 2019-04-01 18:33:55 +02:00
fluxbox
fmt fmt: Add version 5.3.0 with cxxstd variant support (#11799) 2019-06-25 12:01:31 +01:00
foam-extend openfoam: rename openfoam-com to openfoam (#11876) 2019-07-01 22:54:36 -07:00
folly
font-util font-util: Add missing mkfontdir build dependency (#11865) 2019-06-27 15:53:05 +02:00
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fqtrim fqtrim: Create new package (#10861) 2019-03-12 21:30:30 -05:00
fr-hit
freebayes
freeglut
freetype Dynamic library/include paths (#8136) 2019-02-13 17:38:14 -06:00
freexl
fseq
fsl mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
fslsfonts
fstobdf
fstrack
ftgl ftgl: update to 2.1.3-rc5. (#11214) 2019-04-23 09:42:10 -05:00
funhpc
fyba
fzf fzf package: change mirror and add vim plugin (#10920) 2019-04-10 16:23:37 -07:00
g4abla Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4emlow Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4ensdfstate Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4ndl Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4neutronxs Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4photonevaporation Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4pii Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4radioactivedecay Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4realsurface Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4saiddata Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
g4tendl Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
gapbs
gapcloser
gapfiller
gasnet gasnet: 2019.3.0 (#11503) 2019-05-17 12:02:43 -06:00
gatk
gaudi Gaudi package: new version + xenv bugfix (#10668) 2019-02-21 19:04:03 -06:00
gaussian
gawk
gblocks
gcc gcc: Add 9.1.0 (#11386) 2019-05-09 11:25:29 -05:00
gccmakedep
gccxml
gconf
gcta
gdal ncl: Fix build (#11855) 2019-06-26 19:36:29 -05:00
gdb gdb: add version 8.2.1 (#10988) 2019-03-22 11:00:28 +01:00
gdbm
gdk-pixbuf
gdl Add GDL 0.9.9 (#11760) 2019-06-20 13:36:10 -04:00
geant4 mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
geant4-data Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
geopm GEOPM package: add version 1.0.0-rc2 (#10737) 2019-03-07 13:18:05 -06:00
geos Add GEOS 3.7.2 (#11734) 2019-06-17 20:58:43 -04:00
gettext gettext: fix dependency type of xz (#10935) 2019-03-20 04:57:08 +01:00
gflags
ghost
ghostscript various package version updates and build fixes (#10775) 2019-03-05 11:59:47 -08:00
ghostscript-fonts
giflib
ginkgo Ginkgo package: update to release 1.0.0 (#11312) 2019-05-02 08:25:39 +09:00
git Revert "Git: patch to make git relocatable with buildcache. (#11596)" (#11625) 2019-06-04 21:09:05 -05:00
git-fat-git
git-imerge
git-lfs git-lfs: add version 2.7.2 (#11311) 2019-04-30 10:20:03 +02:00
gl2ps gl2ps: add missing dependencies and doc variant. (#10886) 2019-03-25 20:04:33 -05:00
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap gmap-gsnap: add 2019-05-12 (#11453) 2019-05-14 15:58:48 -05:00
gmime
gmodel
gmp
gmsh Update GMSH to 4.2.2 with OpenMP variant (#10914) 2019-03-20 05:12:57 +01:00
gmt
gmtsar New package: GMTSAR (#11315) 2019-05-04 05:40:14 +09:00
gnat
gnu-prolog
gnupg Update GnuPG and associated packages (#11564) 2019-05-26 20:41:37 -05:00
gnuplot
gnutls gnutls: workaround guile build error on macos (#11751) 2019-06-25 13:08:28 -04:00
go Added newer GoLang versions (#11756) 2019-06-17 17:23:09 -05:00
go-bootstrap
gobject-introspection
googletest
gotcha Gotcha package: fixed to build on ARM. (#11840) 2019-06-27 15:34:11 -07:00
gource
gperf
gperftools
gpgme
gplates Restrict gplates to proj@:5 (#11761) 2019-06-18 15:15:14 -04:00
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
grass GRASS GIS does not yet support PROJ.6 (#11762) 2019-06-17 20:59:12 -04:00
grib-api
grnboost
groff
gromacs gromacs: added 2019 patch releases (#11211) 2019-04-17 12:48:06 -05:00
gsl
gslib [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels hacckernels: fix install (#11089) 2019-04-02 15:58:40 -06:00
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
harminv
hc
hdf Add HDF 4.2.14 (#11723) 2019-06-16 08:45:23 +02:00
hdf5 hdf5: add symbols (#10991) 2019-04-20 15:09:46 -07:00
hdf5-blosc
help2man help2man: Add version 1.47.8 and perl runtime dependency (#10862) 2019-03-13 15:11:45 +01:00
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea
hmmer
homer
hoomd-blue
hotspot hotspot: new package at 6.0 (#11610) 2019-06-04 09:35:54 +02:00
hpccg
hpctoolkit
hpcviewer intel-xed and hpcviewer: adapt to new resource placement (#11676) 2019-06-13 09:53:30 +02:00
hpgmg [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
hpl Fix latest HPL for MKL use (#11712) 2019-06-15 15:46:59 -05:00
hpx hpx: overhaul of the package recipe (#11194) 2019-04-19 16:58:46 +02:00
hpx5
hsakmt
hstr
htop
htslib samtools package: Add version 1.5 and htslib 1.5 dependency (#10825) 2019-03-11 19:29:29 -05:00
httpie
hub
hugo
hunspell
hwloc
hybpiper
hydra
hydrogen LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
hyphy hyphy: new package at 2.3.14 (#10759) 2019-03-01 09:31:46 -06:00
hypre hypre: superlu-dist-link-2.15.0.patch is now in hypre@develop (#11829) 2019-06-24 17:55:04 -04:00
i3
ibm-java hpcviewer: new package (#10878) 2019-03-15 15:47:22 -05:00
ibmisc Restrict ibmisc to proj@:4 (#11753) 2019-06-17 18:02:09 -04:00
iceauth
icedtea
icet
ico
icu4c icu4c: Add cxxstd variant (#10552) 2019-02-13 23:05:39 -06:00
id3lib
idba
iegenlib New packages: Chill and IEGenLib (#11406) 2019-06-27 13:41:06 -07:00
igraph
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel intel: add version 19.0.4 (#11741) 2019-06-15 23:19:58 -05:00
intel-daal intel: add 2019.3 (#10843) 2019-03-08 14:50:58 -08:00
intel-gpu-tools
intel-ipp intel: add 2019.3 (#10843) 2019-03-08 14:50:58 -08:00
intel-mkl intel: consolidate libs() in the base class (#11143) 2019-04-09 13:54:21 -07:00
intel-mkl-dnn Add new versions for intel-mkl-dnn. (#11549) 2019-05-26 20:44:34 -05:00
intel-mpi intel: add version 19.0.4 (#11741) 2019-06-15 23:19:58 -05:00
intel-parallel-studio intel: add version 19.0.4 (#11741) 2019-06-15 23:19:58 -05:00
intel-pin new package: intel-pin (#10546) 2019-03-01 12:29:01 -06:00
intel-tbb intel-tbb: fix patch for old compilers (#11371) 2019-05-18 21:00:32 -05:00
intel-xed Resources: use expanded archive name by default (#11688) 2019-06-20 11:09:31 -07:00
intltool
ior ior package: Add patch to fix 3.2.0 with hdf5 (#10923) 2019-03-26 13:36:54 -05:00
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
itstool
itsx
jackcess Update URL for older version of jackcess (#11724) 2019-06-16 08:46:13 +02:00
jags
jansson
jasper
jbigkit
jchronoss
jdk jdk package: Fix fetching with curl 7.64.0+ (#11108) 2019-04-19 14:43:45 -07:00
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-fortran packages/json-fortran: initial commit, required by CP2K+sirius 2019-05-10 03:43:02 +09:00
json-glib
jsoncpp
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3
kealib kealib package: add version 1.4.11 (#10706) 2019-02-26 18:39:27 -06:00
kentutils
kibana
kim-api kim-api and openkim-models: version update and rename (#11065) 2019-04-02 17:44:24 -07:00
kitty kitty: Fix pkgconfig dependency (#11465) 2019-05-15 12:18:16 +02:00
kmergenie
kokkos Kokkos package: add debug variant (#11469) 2019-05-16 17:35:23 -07:00
kraken
krb5
krims
kripke kripke: fix install (#11090) 2019-04-02 16:05:21 -06:00
kvasir-mpl
kvtree
ladot Add ladot package (#10905) 2019-03-15 01:13:25 -05:00
laghos [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
lammps added jpeg,png,ffmpeg variants to lammps (#10404) 2019-06-12 21:02:20 -06:00
last
lastz
latte
launchmon Fix pkgconfig dependencies (#11864) 2019-06-27 14:56:42 +02:00
lazyten
lbann LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
lbxproxy
lbzip2
lcals
lcms
ldc
ldc-bootstrap
legion legion: added recent releases (#11889) 2019-06-29 07:12:24 -06:00
lemon
leveldb Add master branch of leveldb (#11405) 2019-05-13 14:35:15 -04:00
lftp
libaec
libaio
libapplewm
libarchive
libassuan Update GnuPG and associated packages (#11564) 2019-05-26 20:41:37 -05:00
libatomic-ops
libbeagle libbeagle: add 3.1.2 (#10789) 2019-03-05 14:02:52 +01:00
libbeato
libbsd Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
libbson
libcanberra
libcap
libceed [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
libcerf
libcheck
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata libeatmydata: new package (#10941) 2019-03-20 04:47:45 +01:00
libedit
libelf libelf: move url to fossies.org (#10815) 2019-03-06 11:42:44 -08:00
libemos
libepoxy add glx variant to libepoxy (#11814) 2019-06-24 17:57:17 -04:00
libev
libevent
libevpath
libfabric Mercury package: add version 1.0.1 and update dependencies (#10906) 2019-04-20 15:03:18 -07:00
libffi
libffs
libfontenc
libfs
libgcrypt Update GnuPG and associated packages (#11564) 2019-05-26 20:41:37 -05:00
libgd
libgeotiff Add libgeotiff 1.5.1 (#11731) 2019-06-17 20:46:46 -04:00
libgit2
libgpg-error Update GnuPG and associated packages (#11564) 2019-05-26 20:41:37 -05:00
libgpuarray
libgridxc
libgtextutils
libharu
libhio Add libhio v1.4.1.3, 1.4.1.1 (#10699) 2019-02-26 09:56:20 +01:00
libiberty
libice
libiconv
libidn2 CMake package: add dependencies (#11257) 2019-05-15 10:07:31 -07:00
libint cp2k is now a MakefilePackage (#10570) 2019-02-14 07:11:20 +01:00
libjpeg
libjpeg-turbo Add libjpeg-turbo 2.0.2 (#11725) 2019-06-16 08:47:14 +02:00
libksba
liblbxutil
liblockfile
libmatheval
libmaxminddb
libmesh Libmesh updates (#11750) 2019-06-17 19:38:19 -05:00
libmng
libmo-unpack New packages: libmo-unpack and py-mo-pack (#11895) 2019-07-01 18:24:45 -07:00
libmongoc
libmonitor
libnbc
libnl
libnova
libnrm New packages: nrm and libnrm (#11777) 2019-06-20 19:21:44 -07:00
libnsl Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
libogg
liboldx
libpcap Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
libpciaccess
libpfm4
libpipeline
libplist libplist, libusbmuxd: Fix pkgconfig dependency (#10876) 2019-03-13 14:55:23 -05:00
libpmemobj-cpp New package: libpmemobj-cpp (#11309) 2019-05-02 08:12:01 +09:00
libpng
libpsl
libpthread-stubs
libquo
librom
libseccomp Nix package: update dependencies (#10646) 2019-03-07 13:32:55 -06:00
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium added libsodium 1.0.16 and 1.0.17 (#11231) 2019-04-19 12:19:51 -07:00
libspatialindex Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
libspatialite Restrict libspatialite to proj@:5' (#11752) 2019-06-17 23:48:16 -04:00
libsplash
libssh
libssh2
libsvm
libszip
libtasn1 new package: libtasn1 (#10681) 2019-02-26 20:52:04 -06:00
libtermkey
libtiff Add libtiff 4.0.10 (#11732) 2019-06-16 08:52:16 +02:00
libtirpc Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
libtomlc99 libtomlc99: Update version 2019-06-30 16:02:08 -07:00
libtool
libunistring libunistring: added newer versions and patch older ones (#11255) 2019-05-04 03:21:43 +09:00
libunwind
libusb new package: libusb (#10682) 2019-02-26 20:52:47 -06:00
libusbmuxd libplist, libusbmuxd: Fix pkgconfig dependency (#10876) 2019-03-13 14:55:23 -05:00
libuuid
libuv CMake package: update libuv dependency constraints (#10824) 2019-03-07 12:42:24 -06:00
libvdwxc packages/libvdwxc: initial commit, required for SIRIUS 2019-05-10 03:43:02 +09:00
libvorbis
libvterm
libwebsockets
libwindowswm
libx11 new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
libxau
libxaw libxaw: added version 1.0.12 (#10591) 2019-03-14 12:55:56 +01:00
libxaw3d
libxc cp2k is now a MakefilePackage (#10570) 2019-02-14 07:11:20 +01:00
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
libxkbfile
libxkbui
libxml2 libxml2: New version 2.9.9. (#11357) 2019-05-03 09:13:22 +02:00
libxmu
libxp
libxpm libxpm: revert change made in unrelated PR (#11634) 2019-06-05 15:13:19 -05:00
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm LIBXSMM 1.12.1 (#11538) 2019-05-23 10:16:32 -05:00
libxstream Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml new package: libyaml (#10634) 2019-02-19 12:45:31 -06:00
libyogrt libyogrt package: add versions, scheduler support (#10884) 2019-03-27 10:25:31 -07:00
libzip
lighttpd
likwid likwid package: Fix build with version 4.3.4 (#11878) 2019-06-28 10:05:38 -07:00
linkphase3
linux-headers
listres
llvm llvm: don't build CppBackend for flang versions of llvm (#11841) 2019-06-30 17:04:29 -07:00
llvm-openmp-ompt
lm-sensors
lmdb
lmod Update remaining packages to use Stage.source_path (#11662) 2019-06-12 17:07:47 -07:00
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf Add LSF dependency for OpenMPI (#11532) 2019-05-29 10:38:55 -07:00
lsof
ltrace
lua Updated lmod (to version 8.1.5) and associated dependencies (#11552) 2019-05-24 12:45:52 -05:00
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem bugfix: lua-luafilesystem package should use stage.source_path (#11648) 2019-06-06 14:07:46 -07:00
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4 lz4: Add 1.9.0 (#11207) 2019-04-17 09:30:23 -05:00
lzma
lzo lzo package: add version 2.10 (#11015) 2019-03-26 15:40:48 -05:00
m4 Define LDFLAGS when using fujitsu compiler (#11669) 2019-06-10 11:01:32 -04:00
macsio macsio: fix install (#11088) 2019-04-02 15:58:21 -06:00
mad-numdiff
mafft
magics Restrict magics to proj@:5 (#11763) 2019-06-17 21:33:25 -04:00
magma Add version 2.5.1-alpha1 of MAGMA (#11486) 2019-05-17 08:19:32 -05:00
makedepend
mallocmc
man-db
manta
mapserver Specify which versions of PROJ work with MapServer (#11764) 2019-06-17 21:34:54 -04:00
maq
margo Add margo package and add rc1 tag for argobots package (#11281) 2019-05-01 09:47:34 +09:00
mariadb New package: mariadb-c-client (#7729) 2019-03-15 14:12:30 -05:00
mariadb-c-client New package: mariadb-c-client (#7729) 2019-03-15 14:12:30 -05:00
masa Add new versions of metaphysicl and change masa to use branch instead of tag. (#11436) 2019-05-14 08:56:52 +09:00
masurca Masurca (#11286) 2019-04-30 08:24:12 -05:00
mathematica mathematica: new package at 12.0.0 (#11509) 2019-05-30 13:21:16 -04:00
matio
matlab
maven
maverick
mawk
mbedtls mbedtls: add pic variant (#11558) 2019-05-24 21:50:13 -05:00
mc
mcl
mdtest
med
meep
mefit
megadock megadock: new package at 4.0.3 (#10537) 2019-05-14 14:47:19 -05:00
megahit megahit: Add version 1.1.4 (#10979) 2019-03-22 11:19:28 +01:00
memaxes
meme
memkind
memsurfer memsurfer: add new package 2019-04-18 19:31:08 -07:00
meraculous
mercurial
mercury Clean up mercury package and add boostsys, shared variants (#11368) 2019-05-09 12:56:10 -05:00
mesa mesa: Revert updated meson build and restore autotools build (#11595) 2019-06-03 10:55:36 -04:00
mesa-glu mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
meshkit
meson
mesquite
metabat
metaphysicl Add new versions of metaphysicl and change masa to use branch instead of tag. (#11436) 2019-05-14 08:56:52 +09:00
metis
mfem [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
mgis Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). (#11109) 2019-04-08 09:09:14 +02:00
microbiomeutil
migrate
minced
mindthegap
miniaero
miniamr miniamr: add develop version and update release (#11101) 2019-04-03 16:17:04 -06:00
miniasm
miniconda2 miniconda 2 and 3 packages: add version 4.6.14 (#11232) 2019-04-19 17:42:02 -07:00
miniconda3 miniconda 2 and 3 packages: add version 4.6.14 (#11232) 2019-04-19 17:42:02 -07:00
minife
minighost
minigmg
minimap2
minimd
miniqmc miniqmc: fix install (#11091) 2019-04-02 16:23:37 -06:00
minisign
minismac2d
minitri
minivite Bumping-up miniVite to version 1.1 (#11828) 2019-06-24 19:41:01 -06:00
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg New package: MMG (#10902) 2019-03-25 20:24:40 -05:00
moab
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-cxx-driver
mono mono package: add new versions (#10670) 2019-02-21 18:52:30 -06:00
montage montage: new package at 6.0 (#11696) 2019-06-14 16:40:50 -05:00
mosh
mothur
motif
motioncor2
mount-point-attributes
mozjs
mpark-variant
mpc Download GNU packages from mirrors (Part 2) (#10555) 2019-02-20 09:08:42 -06:00
mpdecimal Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
mpe2 mpe2 use autotools and add libx11 dependency. (#11807) 2019-06-21 07:54:51 -04:00
mpest
mpfr
mpibash
mpiblast
mpich mpich: wrapperrpath variant allows disablement of RPATH usage in mpicc 2019-07-01 15:09:40 -07:00
mpifileutils mpifileutils v0.9.1 (#11216) 2019-04-17 18:11:14 -05:00
mpilander
mpileaks mpileaks: use autotools. (#11808) 2019-06-21 07:55:04 -04:00
mpip various package version updates and build fixes (#10775) 2019-03-05 11:59:47 -08:00
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3 mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
mscgen
msgpack-c
mshadow
msmc
multitail
multitime
multiverso
mummer
mumps MUMPS: add version 5.2.0 (#11234) 2019-04-19 15:55:56 -05:00
munge
muparser
muscle
muse
muster
mutationpp new package: mutationpp (#11705) 2019-06-15 10:29:36 -05:00
mvapich2 mvapich2 package: add version 2.3.1 (#11037) 2019-04-02 17:07:06 -07:00
mxml
mxnet
mysql mysql: 5.7.X versions link boost (#11237) 2019-04-19 15:34:55 -07:00
nag
nalu
nalu-wind nalu-wind package: require hypre without superlu-dist. (#11022) 2019-04-02 17:02:22 -07:00
namd
nano
nanoflann
nanopb
nasm Add nasm 2.14.02 (#11729) 2019-06-16 08:50:05 +02:00
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
nccmp
ncdu
ncftp
ncl ncl: Fix build (#11855) 2019-06-26 19:36:29 -05:00
nco nco: Add 4.7.9 (#11389) 2019-05-09 12:33:36 -05:00
ncurses
ncview
ndiff
nek5000 Nek5000: Fix CFLAGS and FFLAGS handling (#11339) 2019-05-04 03:52:45 +09:00
nekbone [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
nekcem [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
nektar
nektools [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
neovim
nest nest: change cmake_options to args. (#11273) 2019-04-24 11:09:49 +09:00
netcdf netcdf: Fix build if curl is not installed (#11387) 2019-05-09 13:23:49 -04:00
netcdf-cxx netcdf-cxx package: set ldflags for hdf5 and netcdf (#11026) 2019-04-02 17:04:09 -07:00
netcdf-cxx4
netcdf-fortran Bump netcdf-fortran version to 4.4.5 (#11790) 2019-06-19 17:38:17 -05:00
netgauge
netgen netgen: update broken URL (#10882) 2019-03-22 10:01:07 -05:00
netlib-lapack
netlib-scalapack netlib-scalapack: fix compatibility with mpi2 i.e openmpi-4 (#11124) 2019-04-07 10:01:54 -05:00
netlib-xblas
nettle nettle: fix broken build (#11611) 2019-06-05 19:09:01 -05:00
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
ninja ninja{-fortran}: make pkgs nonvirtual (fix #11628) (#11629) 2019-06-10 12:53:30 -04:00
ninja-fortran ninja{-fortran}: make pkgs nonvirtual (fix #11628) (#11629) 2019-06-10 12:53:30 -04:00
nix nix package: improve dependencies based on prerequisites from manual. (#10927) 2019-03-26 13:39:40 -05:00
nlohmann-json NLohmann-JSON: v3.5.0 (#10615) 2019-02-18 08:53:50 +01:00
nlopt
nmap
nnvm
node-js node-js package: Depend on zlib when +zlib (#10965) 2019-03-26 14:43:30 -05:00
notmuch
npb
npm
npth
nrm New packages: nrm and libnrm (#11777) 2019-06-20 19:21:44 -07:00
nseg Update remaining packages to use Stage.source_path (#11662) 2019-06-12 17:07:47 -07:00
nspr
ntpoly New Package: NTPoly (#11412) 2019-05-15 04:06:10 +09:00
numactl
numdiff remove myself from maintainers of some packages (#11319) 2019-04-30 10:16:53 +02:00
nut nut: add v0.1.1 (#11444) 2019-05-14 16:36:31 -06:00
nvptx-tools
nwchem
nyancat
ocaml
occa [WIP] CEED 2.0 (#10903) 2019-04-17 17:37:41 -07:00
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write openfoam: rename openfoam-com to openfoam (#11876) 2019-07-01 22:54:36 -07:00
of-catalyst openfoam: rename openfoam-com to openfoam (#11876) 2019-07-01 22:54:36 -07:00
of-precice openfoam: rename openfoam-com to openfoam (#11876) 2019-07-01 22:54:36 -07:00
omega-h omega-h package: add version 9.27.0 (#11366) 2019-05-04 06:59:26 +09:00
ompss
ompt-openmp
oniguruma
ont-albacore Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
opa-psm2
opam
opari2 Fix URLs for VI-HPS projects (#10821) 2019-03-11 20:12:44 -05:00
openbabel
openblas Add OpenBLAS 0.3.6 (#11375) 2019-05-07 13:36:38 -05:00
opencoarrays
opencv OpenCV: New versions, adjust protobuf dependency (#11243) 2019-05-01 03:37:47 +09:00
openexr
openfast
openfoam openfoam: rename openfoam-com to openfoam (#11876) 2019-07-01 22:54:36 -07:00
openfoam-org openfoam: rename openfoam-com to openfoam (#11876) 2019-07-01 22:54:36 -07:00
openfst
opengl mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
openglu
openimageio
openjdk New package: ibm-java (#10777) 2019-03-12 18:05:47 -05:00
openjpeg Add openjpeg 2.3.1 (#11728) 2019-06-16 08:49:36 +02:00
openkim-models kim-api and openkim-models: version update and rename (#11065) 2019-04-02 17:44:24 -07:00
openmc
openmpi Add LSF dependency for OpenMPI (#11532) 2019-05-29 10:38:55 -07:00
opennurbs
openpa
openpmd-api openPMD-api: pybind11>=2.3.0 (#11744) 2019-06-16 17:47:55 +02:00
openscenegraph
openslide
openspeedshop OpenSpeedShop/CBTF package updates and fixes (#11470) 2019-05-16 18:19:55 -07:00
openspeedshop-utils OpenSpeedShop/CBTF package updates and fixes (#11470) 2019-05-16 18:19:55 -07:00
openssh
openssl openssl: Add 1.1.1b, 1.1.0j and 1.0.2r (#10779) 2019-03-05 16:26:18 +01:00
opium
optional-lite Update optional-lite and span-lite to use CMakePackage (#11407) 2019-05-20 13:04:06 -05:00
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osu-micro-benchmarks osu-micro-benchmarks: add version 5.6.1 (#11779) 2019-06-19 11:04:03 -07:00
otf OTF package: use autotools. (#11873) 2019-06-28 10:13:21 -07:00
otf2 Fix URLs for VI-HPS projects (#10821) 2019-03-11 20:12:44 -05:00
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal New package: pal (#10766) 2019-03-05 17:41:54 -06:00
paml
panda
pandaseq
pango
pangomm
papi papi: Add 5.7.0 (#11390) 2019-05-09 11:26:05 -05:00
papyrus
paradiseo
parallel added checksum for 20190222 release of gnu parallel (#10865) 2019-03-12 19:40:29 -05:00
parallel-netcdf PNetCDF package: enable option required by NetCDF (#11420) 2019-05-15 05:15:38 +09:00
paraver
paraview vtk, paraview, catalyst packages: Add maintainers (#11774) 2019-06-19 10:57:19 -07:00
parmetis
parmgridgen
parquet
parsimonator
parsplice added branch multisplice to the parsplice package (#11504) 2019-05-17 12:08:40 -06:00
partitionfinder Rename py-pytables -> py-tables (#11847) 2019-06-25 21:32:49 -04:00
pasta New package: PASTA (#11338) 2019-05-04 03:50:54 +09:00
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre qt: Use more system dependencies and fix build with new gcc versions (#10817) 2019-03-12 20:04:11 -05:00
pcre2 qt: Use more system dependencies and fix build with new gcc versions (#10817) 2019-03-12 20:04:11 -05:00
pdf2svg Updates to poppler to get pdf2svg working (#11681) 2019-06-15 17:32:39 -05:00
pdftk
pdsh
pdt Package/tau/tau 2.28.1 update (#11591) 2019-05-31 10:01:19 -05:00
pegtl
pennant
percept
perl Fix bug when system perl is used. (#11034) 2019-04-10 08:44:27 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-logger-simple
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intspan
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml
perl-yaml-libyaml
petsc petsc: add version 3.11.3 (#11857) 2019-06-27 07:02:03 +02:00
pexsi
pfft
pflotran xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
pfunit pfunit: fixed a typo (#11843) 2019-06-25 14:06:52 -04:00
pgdspider
pgi Add new version of PGI compiler. (#11417) 2019-05-10 13:11:23 -05:00
pgmath
phantompeakqualtools
phast
phasta
phist phist can't be compiled with gcc older than 4.9.2 (#11677) 2019-06-25 12:53:21 -04:00
phrap-crossmatch-swat
phred new package: phred (#10700) 2019-02-26 19:14:58 -06:00
phylip
phyluce
picard picard package: Add version 2.19.0 (#11018) 2019-04-02 17:01:17 -07:00
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism Restrict pism to proj@:4 (#11754) 2019-06-17 18:35:03 -04:00
pixman pixman: fix patch (#11173) 2019-04-15 14:49:02 +02:00
pkg-config
pkgconf pkgconf: Add 1.6.1 (#11863) 2019-06-27 22:15:04 +02:00
planck-likelihood planck-likelihood: remove -m64 on ARM (#11902) 2019-07-01 10:48:45 -07:00
plasma xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
platypus
plink
plplot
plumed cp2k is now a MakefilePackage (#10570) 2019-02-14 07:11:20 +01:00
pmdk PMDK package: requires ncurses dependency (#11868) 2019-06-28 10:15:06 -07:00
pmgr-collective
pmix
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler Updates to poppler to get pdf2svg working (#11681) 2019-06-15 17:32:39 -05:00
poppler-data
porta
portage portage: add v1.2.2 (#11842) 2019-06-28 06:39:26 -06:00
portcullis
postgresql postgresql package: build enhancements. (#10877) 2019-03-25 19:51:51 -05:00
ppl
pplacer
prank
precice precice: add version 1.5.1 (#11809) 2019-06-21 07:56:35 -04:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj Add PROJ.6 (#11730) 2019-06-17 23:46:42 -04:00
protobuf LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
proxymngr
prrte New package: PRRTE (#11614) 2019-06-18 18:47:24 -07:00
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py add new package py-absl-py (#11812) 2019-06-23 17:33:36 -04:00
py-adios
py-advancedhtmlparser py-advancedhtmlparser: new package (#10867) 2019-03-13 15:06:01 +01:00
py-aenum Add py-aenum package (#11716) 2019-06-16 08:39:54 +02:00
py-affine
py-alabaster Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-alembic
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astor New package py-astor (and test dependency py-astunparse) (#11813) 2019-06-23 17:33:22 -04:00
py-astroid Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
py-astropy
py-astunparse New package py-astor (and test dependency py-astunparse) (#11813) 2019-06-23 17:33:22 -04:00
py-async-generator
py-atomicwrites
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap fixes py-basemap package (#11104) 2019-04-05 11:27:23 -07:00
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biomine py-biomine: new package (#10868) 2019-03-13 15:17:06 +01:00
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach
py-blessed new package/py-blessed (#11656) 2019-06-22 17:05:03 -05:00
py-blessings
py-bokeh Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-boltons
py-boto3 Add new package py-boto3 (#11722) 2019-06-16 08:44:41 +02:00
py-botocore Add new package py-botocore (#11720) 2019-06-16 08:43:06 +02:00
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy py-cartopy does not yet support PROJ.6 (#11765) 2019-06-17 21:35:14 -04:00
py-cclib
py-cdat-lite
py-cdo
py-certifi py-certifi: Add version 2017.4.17 (#10828) 2019-03-07 13:09:26 -06:00
py-cffi Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-cftime
py-chardet py-chardet: Add version 3.0.2 (#10827) 2019-03-11 19:44:30 -05:00
py-checkm-genome
py-cheetah
py-click
py-click-plugins
py-cligj Add py-cligj 0.5.0 (#11727) 2019-06-16 08:48:42 +02:00
py-cloudpickle
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap py-crossmap: new package at 0.3.3 (#10854) 2019-03-11 15:13:02 -05:00
py-cryptography
py-csvkit Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython Add latest version of py-cython (#11494) 2019-05-23 20:01:45 -05:00
py-dask Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-dbf
py-decorator
py-deeptools py-deeptools: adding release 3.2.1 sha256 sum (#11174) 2019-04-12 09:45:04 +02:00
py-dendropy
py-descartes
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints py-flake8: Add missing dependencies for @3.7.7 (#10796) 2019-03-07 12:50:30 -06:00
py-enum34
py-epydoc
py-espresso py-espresso: added v4.0.2 2019-05-03 10:40:54 +09:00
py-espressopp py-espressopp: add v2.0.2 (#10909) 2019-03-15 12:59:23 -05:00
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-filelock
py-fiona Add py-fiona 1.8.6 (#11736) 2019-06-17 20:54:58 -04:00
py-fiscalyear
py-flake8 py-flake8: Add missing dependencies for @3.7.7 (#10796) 2019-03-07 12:50:30 -06:00
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye py-flye: new package at 2.4.2 (#11584) 2019-05-29 15:37:52 -05:00
py-fn
py-fparser
py-freezegun Add new package py-freezegun (#11718) 2019-06-16 08:41:27 +02:00
py-funcsigs
py-functools32
py-future
py-futures
py-fypp
py-gdbgui
py-genders
py-genshi
py-geopandas Add py-geopandas 0.5.0 (#11737) 2019-06-16 08:57:13 +02:00
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-graphviz LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5glance
py-h5py Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-hdfs
py-hepdata-validator
py-hpccm py-hpccm: New package (#10957) 2019-03-22 11:39:10 +01:00
py-html2text
py-html5lib
py-htseq py-htseq: new version (#11525) 2019-05-21 12:08:31 -05:00
py-httpbin
py-hypothesis Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-iminuit
py-importlib
py-invoke
py-ipaddress
py-ipdb
py-ipykernel Py-jupyter package: dependency fixes (#10966) 2019-03-26 15:05:39 -05:00
py-ipython Fix py-yt for Python 2 by requesting older py-ipython version (#11416) 2019-05-15 04:24:52 +09:00
py-ipython-genutils Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2 Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-jmespath Add new package py-jmespath (#11719) 2019-06-16 08:42:35 +02:00
py-joblib Add latest version of joblib (#11495) 2019-05-19 14:17:03 -05:00
py-jprops
py-jpype
py-jsonpatch New packages: nrm and libnrm (#11777) 2019-06-20 19:21:44 -07:00
py-jsonpointer New packages: nrm and libnrm (#11777) 2019-06-20 19:21:44 -07:00
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console Py-jupyter package: dependency fixes (#10966) 2019-03-26 15:05:39 -05:00
py-jupyter-core
py-jupyter-notebook Py-jupyter package: dependency fixes (#10966) 2019-03-26 15:05:39 -05:00
py-jupyterhub Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-keras
py-keras-applications Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-keras-preprocessing Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-kiwisolver
py-kmodes Add py-kmodes package (#11497) 2019-05-19 14:17:30 -05:00
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble Update libensemble to v0.5.0 (#11544) 2019-05-24 15:11:56 -05:00
py-line-profiler
py-linecache2
py-lit Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-llvmlite py-llvmlite: Add versions 0.26.0 and 0.27.1 (#10866) 2019-03-12 19:40:01 -05:00
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-luigi Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-mappy
py-markdown py-markdown package: update dependency version range (#11908) 2019-07-01 17:52:41 -07:00
py-markupsafe
py-matplotlib py-matplotlib: Fix dependencies in [2.1.0:3.0.0) (#11787) 2019-06-19 17:38:04 -05:00
py-mccabe
py-mdanalysis Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
py-meep
py-memory-profiler
py-merlin
py-metasv py-metasv: new package at 0.5.4 (#11476) 2019-05-17 14:33:04 -05:00
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mo-pack New packages: libmo-unpack and py-mo-pack (#11895) 2019-07-01 18:24:45 -07:00
py-mock
py-modred
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-mpmath Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-multiprocess
py-multiqc
py-munch
py-mx
py-mxnet
py-myhdl
py-mysql-connector New package: py-mysql-connector (#10327) 2019-03-12 20:52:43 -05:00
py-mysqldb1 Fix mysqldb1 (#9978) 2019-03-12 20:57:29 -05:00
py-natsort
py-nbconvert
py-nbformat
py-nc-time-axis New package: py-nc-time-axis (#11898) 2019-07-01 18:07:57 -07:00
py-neo
py-nestle
py-netcdf4 py-netcdf4: depend on hdf5+hl (#11893) 2019-07-01 15:38:35 +02:00
py-netifaces
py-networkx Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-nose
py-nosexcover
py-numba py-numba package: Depend on py-setuptools so an egg isn't built (#10964) 2019-03-26 14:42:57 -05:00
py-numexpr
py-numexpr3
py-numpy Add py-numpy 1.16.4 (#11726) 2019-06-16 08:47:38 +02:00
py-numpydoc
py-olefile
py-onnx LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
py-ont-fast5-api
py-openpmd-validator Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-packaging
py-palettable
py-pandas Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-paramiko
py-partd
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pauvre rename py-pauvr to py-pauvre (#11437) 2019-05-14 08:55:53 +09:00
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-petsc4py petsc4py: add verson 3.11.0 (#11186) 2019-04-15 09:54:40 +02:00
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pint
py-pip Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pipits
py-pkgconfig Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-plotly
py-pluggy
py-ply
py-pmw Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-poster
py-pox
py-ppft
py-prettytable
py-progress
py-progressbar2 New package: py-progressbar2 (#11421) 2019-05-15 10:49:28 +09:00
py-projectq
py-prometheus-client
py-prompt-toolkit Py-jupyter package: dependency fixes (#10966) 2019-03-26 15:05:39 -05:00
py-protobuf LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
py-psutil Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow py-arrow and arrow: add version 0.12.1 (#11004) 2019-04-02 17:00:04 -07:00
py-pyasn1
py-pybedtools py-pybedtools: new package at 0.6.9 (#11475) 2019-05-17 14:32:21 -05:00
py-pybigwig py-pybigwig: needs curl at link time (#10892) 2019-03-14 11:07:50 +01:00
py-pybind11 pybind11: v2.3.0 (#11713) 2019-06-15 10:30:04 -05:00
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares New package: py-pycares (starting at 3.0.0) (#11340) 2019-05-11 03:48:37 +09:00
py-pychecker
py-pycodestyle py-flake8: Add missing dependencies for @3.7.7 (#10796) 2019-03-07 12:50:30 -06:00
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pydv Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pygdbmi
py-pygments Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pylint Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pymatgen
py-pyminifier
py-pymol Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc New package: py-pyodbc (#10972) 2019-03-26 15:09:55 -05:00
py-pypar
py-pyparsing Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pypeflow
py-pyprof2html
py-pyproj Add py-pyproj 2.2.0 (#11735) 2019-06-17 20:23:40 -04:00
py-pyqi
py-pyqt
py-pyrad
py-pyrosar New package: py-pyrosar (#11428) 2019-05-15 10:53:30 +09:00
py-pysam py-pysam: update (#11377) 2019-05-07 08:29:05 -05:00
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysocks
py-pyspark
py-pysqlite
py-pytest Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil py-python-dateutil: Version 2.7.0 acquired dependency on setuptools-scm (#11795) 2019-06-20 09:18:04 -05:00
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-levenshtein
py-python-socketio
py-python-utils New package: py-python-utils (#11422) 2019-05-15 10:47:28 +09:00
py-pythonqwt
py-pytorch
py-pytz py-pytz package: add version 2018.4 (#10959) 2019-03-26 14:41:09 -05:00
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-queryablelist py-advancedhtmlparser: new package (#10867) 2019-03-13 15:06:01 +01:00
py-radical-utils
py-ranger
py-rasterio Add py-rasterio 1.0.24 (#11738) 2019-06-18 15:14:27 -04:00
py-readme-renderer
py-regex
py-reportlab
py-requests py-requests: Add missing dependencies for versions 2.16.0 and up (#10996) 2019-04-10 15:38:28 -07:00
py-requests-toolbelt
py-restview
py-rope
py-rpy2 Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-rsa
py-rseqc
py-rtree
py-s3transfer Add new package py-s3transfer (#11721) 2019-06-16 08:43:41 +02:00
py-saga-python
py-scandir
py-scientificpython
py-scikit-image Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-scikit-learn py-scikit-learn: needs setuptools (#11379) 2019-05-07 13:35:32 -05:00
py-scikit-optimize New package: py-scikit-optimize (#10973) 2019-03-26 15:10:35 -05:00
py-scipy Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-scoop New package: py-scoop (#11423) 2019-05-15 10:50:41 +09:00
py-seaborn
py-send2trash
py-setuptools Add latest version of setuptools (#11493) 2019-05-19 14:16:37 -05:00
py-setuptools-git
py-setuptools-scm
py-sfepy Rename py-pytables -> py-tables (#11847) 2019-06-25 21:32:49 -04:00
py-sh
py-shapely Add py-shapely 1.6.4.post2 (#11739) 2019-06-18 14:24:56 -04:00
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip py-sip package: Add version 4.19.3 (#10742) 2019-03-07 13:16:54 -06:00
py-six Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spatialist New package: py-spatialist (#11427) 2019-05-15 10:52:31 +09:00
py-spectra
py-spefile
py-spglib
py-sphinx Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-sphinxautomodapi
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-tables Rename py-pytables -> py-tables (#11847) 2019-06-25 21:32:49 -04:00
py-tabulate
py-tappy
py-tblib New package: py-tblib (#11425) 2019-05-15 10:51:37 +09:00
py-terminado
py-testinfra
py-tetoolkit py-tetoolkit: Add version 2.0.3 (#10749) 2019-02-28 12:59:30 +01:00
py-texttable LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
py-theano Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-tifffile
py-toml
py-tomopy
py-toolz
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash py-treehash: Create new package (#10872) 2019-03-13 16:03:09 -05:00
py-tuiview
py-twisted
py-typesentry new python package/py-typesentry (#11657) 2019-06-11 14:33:43 -04:00
py-typing Added setuptools to receipe (#11463) 2019-05-15 12:19:04 +02:00
py-typing-extensions LBANN: add support for new python front end (#11395) 2019-05-15 06:20:00 +09:00
py-tzlocal
py-udunits
py-umi-tools py-umi-tools: Add latest versions (#11256) 2019-04-23 18:23:44 +09:00
py-unicycler py-unicycler: new package (#7727) 2019-02-25 09:44:05 +01:00
py-unittest2
py-unittest2py3k
py-urllib3 py-urllib3: Add version 1.21.1 (#10826) 2019-03-11 19:44:07 -05:00
py-urwid
py-vcversioner
py-virtualenv Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-warlock New packages: nrm and libnrm (#11777) 2019-06-20 19:21:44 -07:00
py-wcsaxes
py-wcwidth
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel Add newer versions for 51 Python packages (#10738) 2019-02-27 12:45:28 -06:00
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xdot
py-xenv Gaudi package: new version + xenv bugfix (#10668) 2019-02-21 19:04:03 -06:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen py-xopen: Add version 0.5.0 (#10995) 2019-03-26 15:32:09 -05:00
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt Fix py-yt for Python 2 by requesting older py-ipython version (#11416) 2019-05-15 04:24:52 +09:00
py-ytopt
py-zmq
py-zope-event
py-zope-interface
pythia6 pythia6: fix input verification issue and example data checksum. (#10563) 2019-02-13 23:17:46 -06:00
python added tix package and python variant for tix (#11599) 2019-06-06 17:19:24 -04:00
qbank
qbox
qca
qhull
qjson
qmcpack QMCPACK Update May 2019 (#11492) 2019-05-18 22:57:52 -05:00
qmd-progress
qorts
qrupdate
qt fix qt build on gcc8.3 (#11633) 2019-06-08 13:09:16 -04:00
qt-creator various package version updates and build fixes (#10775) 2019-03-05 11:59:47 -08:00
qtgraph OpenSpeedShop/CBTF package updates and fixes (#11470) 2019-05-16 18:19:55 -07:00
qthreads qthreads package: make hwloc dependency optional and add version 1.14 (#11780) 2019-06-28 11:43:06 -07:00
quantum-espresso elpa: override headers prop for common include-dir localization 2019-05-10 03:43:02 +09:00
quinoa
qwt
r R: add version 3.6.0 2019-05-02 08:34:00 +09:00
r3d r3d: add version 2018-01-07 (#11770) 2019-06-18 09:36:49 -05:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beanplot
r-bfast r-bfast: new package at 1.5.7 (#10733) 2019-03-01 10:17:37 -06:00
r-bfastspatial r-bfastspatial: new package at 0.6.2 (#10734) 2019-03-01 10:18:14 -06:00
r-bglr r-bglr: new package at 1.0.8 (#11489) 2019-05-17 14:35:38 -05:00
r-bh r-bh: add 1.69.0-1 (#11435) 2019-05-14 08:56:14 +09:00
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-caret
r-caroline r-caroline: new package at 0.7.6 (#11450) 2019-05-14 15:57:33 -05:00
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-clipr
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat
r-commonmark r-commonmark: new package at 1.7 (#11049) 2019-04-02 17:22:42 -07:00
r-complexheatmap
r-compositions
r-construct r-construct: new package at 1.0.3 (#11452) 2019-05-14 16:24:01 -05:00
r-convevol
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-crul r-crul: new package at 0.7.4 (#11459) 2019-05-15 15:51:11 -05:00
r-ctc
r-cubature
r-cubist
r-curl r-curl: add 3.3 (#11456) 2019-05-15 15:47:45 -05:00
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-desc r-desc: new package at 1.2.0 (#11048) 2019-04-02 17:10:24 -07:00
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-edger
r-ellipse
r-emmli r-emmli: new package (#11557) 2019-05-26 20:43:22 -05:00
r-energy
r-ensembldb
r-ergm
r-evaluate
r-expint
r-expm
r-factoextra
r-factominer
r-fansi Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gcrma
r-gdalutils r-gdalutils: new package at 2.0.1.14 (#10731) 2019-03-01 09:53:30 -06:00
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph r-geomorph: new version (#11556) 2019-05-26 23:34:17 -05:00
r-geonames r-geonames: new package at 0.999 (#11455) 2019-05-15 16:04:50 -05:00
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-gwmodel New package: r-gwmodel (starting at 2.0-9) (#11887) 2019-07-01 18:14:29 -07:00
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-hoardr r-hoardr: new package at 0.5.2 (#11051) 2019-04-02 17:28:05 -07:00
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode r-httpcode: new package at 0.2.0 (#11454) 2019-05-15 15:50:32 -05:00
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-intervals r-intervals: new package at 0.15.1 (#11884) 2019-06-28 19:42:55 -04:00
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-isdparser r-isdparser: new package at 0.3.0 (#11460) 2019-05-15 15:51:50 -05:00
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-loo r-loo: new package at 2.1.0 (#11448) 2019-05-14 16:22:29 -05:00
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv r-nleqslv: new package at 3.3.2 (#10696) 2019-02-26 12:19:48 -06:00
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-nortest r-nortest: new package at 1.0-4 (#10729) 2019-03-01 09:55:30 -06:00
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-optparse
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phylostratr r-phylostratr: new package (#11053) 2019-05-15 16:03:36 -05:00
r-phytools
r-picante
r-pillar Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-pkgbuild r-pkgbuild: new package at 1.0.3 (#11046) 2019-04-02 17:09:59 -07:00
r-pkgconfig Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-pkgload r-pkgload: new package at 1.0.2 (#11047) 2019-04-02 17:21:55 -07:00
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-popgenome
r-popvar r-popvar: new package at 1.2.1 (#11490) 2019-05-17 14:45:21 -05:00
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-qtl r-qtl: new package at 1.44-9 (#11487) 2019-05-17 14:33:42 -05:00
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomfields
r-randomfieldsutils
r-randomforest
r-randomglm r-randomglm: new package at 1.02-1 (#11589) 2019-05-30 13:35:01 -05:00
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal r-rgdal does not yet support PROJ.6 (#11766) 2019-06-17 23:47:52 -04:00
r-rgenoud
r-rgeos
r-rgl mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhmmer r-rhmmer: new package at 0.1.0 (#11050) 2019-04-02 17:25:55 -07:00
r-rhtslib
r-rinside r-rinside package: add version 0.2.15 (#10949) 2019-03-26 14:37:49 -05:00
r-rjags
r-rjava rJava package: add version 0.9-11 (#11334) 2019-05-04 03:45:35 +09:00
r-rjson
r-rjsonio
r-rlang Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql r-rmysql: add 0.10.17, mariadb-connector-c dependency (#11044) 2019-05-15 15:58:15 -05:00
r-rngtools
r-rnoaa r-rnoaa: new package at 0.8.4 (#11461) 2019-05-15 15:52:17 -05:00
r-robust
r-robustbase
r-rocr
r-rodbc
r-rots
r-roxygen2 r-roxygen2 package: added 6.1.1, more dependencies (#11045) 2019-04-02 17:27:04 -07:00
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup r-rrblup: new package at 4.6 (#11488) 2019-05-17 14:34:33 -05:00
r-rrcov
r-rrpp
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan r-rstan: add 2.18.2 (#11447) 2019-05-14 16:23:14 -05:00
r-rstantools r-rstantools: new package at 1.5.1 (#11451) 2019-05-14 15:57:54 -05:00
r-rstudioapi
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf r-sf may not support PROJ.6 (#11767) 2019-06-23 11:35:33 -05:00
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-spacetime r-spacetime: new package at 1.2-2 (#11885) 2019-07-01 13:39:15 -04:00
r-sparsem
r-spatial r-spatial: new package at 7.3-11 (#10728) 2019-03-01 09:57:59 -06:00
r-spatialreg New package: r-spatialreg (starting at 1.1-3) (#11886) 2019-07-01 18:13:06 -07:00
r-spdata New package: r-spdata (starting at version 0.3.0) (#11883) 2019-07-01 18:11:16 -07:00
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squash
r-sseq
r-stanheaders r-stanheaders: add 2.18.1 (#11446) 2019-05-14 15:18:03 -05:00
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-taxizedb r-taxizedb: new package at 0.1.4 (#11052) 2019-05-15 16:02:54 -05:00
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-triebeard r-triebeard: new package at 0.3.0 (#11457) 2019-05-15 15:48:17 -05:00
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-urltools r-urltools: new package at 1.7.3 (#11458) 2019-05-15 15:48:54 -05:00
r-utf8 Package Updates for ECP CANDLE Supervisor (#10760) 2019-03-01 14:46:13 -06:00
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vfs r-vfs: new package at 1.0.2 (#10697) 2019-02-26 12:21:12 -06:00
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-wgcna
r-whisker
r-withr r-withr: add 2.1.2 (#11445) 2019-05-14 15:17:25 -05:00
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xtable
r-xts r-xts: add 0.11-2 (#10730) 2019-03-01 09:54:26 -06:00
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon racon: Add versions 1.3.2 and 1.3.1 (#10980) 2019-03-22 11:19:13 +01:00
raft
ragel
raja Fix CMake versions dependencies in RAJA package (#11440) 2019-05-16 13:54:52 +02:00
randfold
random123 Provide a patched version of random123 that will work on ARM platforms (#11388) 2019-05-08 08:38:47 -06:00
randrproto
range-v3 range-v3: New versions 0.3.7, 0.4.0, 0.5.0. (#11358) 2019-05-03 09:13:50 +02:00
rankstr
rapidjson "Werror" too strict for recent compilers (#10802) 2019-03-12 20:10:51 -05:00
ravel
raxml
ray
rclone Ensure proper gopath set for rclone (#11755) 2019-06-18 10:49:07 -07:00
rdma-core
rdp-classifier
re2c
readfq
readline
recon recon: new package at 1.08 (#11408) 2019-05-15 15:55:10 -05:00
recordproto
redis redis: new package (#10915) 2019-03-16 14:47:11 +01:00
redset
redundans
regcm Revert to manual flag enabling, due to RegCM bug in configure. (#10863) 2019-03-12 19:48:45 -05:00
relax Add Gaudi and RELAX packages (#9194) 2019-02-13 23:04:38 -06:00
relion RELION package: add version 3.0.6 (#11851) 2019-06-26 09:57:14 -07:00
rempi
rename
rendercheck
renderproto
repeatmasker repeatmasker: perl and HMMER dependency fixes (#11660) 2019-06-18 11:11:00 -07:00
repeatmodeler repeatmodeler: new package at 1.0.11 (#11472) 2019-05-17 14:31:26 -05:00
repeatscout repeatscout: new package at 1.0.5 (#11409) 2019-05-15 16:04:17 -05:00
resourceproto
revbayes Revbayes update (#11559) 2019-05-30 13:23:32 -04:00
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb
rockstar
rodinia New package: Rodinia (starting at 3.1) (#11650) 2019-06-24 18:32:46 -07:00
root Buildcache relocate.py error fix (#11616) 2019-06-04 14:39:04 -05:00
rose ROSE: add version 0.9.10.0, update to Autotools, add variants (#9484) 2019-05-29 12:00:50 -07:00
ross ross package: add version 7.0.1 (#11078) 2019-04-02 17:50:41 -07:00
routino new package: routino (#10679) 2019-02-26 18:41:44 -06:00
rpcsvc-proto Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
rr
rsbench
rsem update package rsem (#10813) 2019-03-06 14:57:54 +01:00
rstart
rsync
rtags
rtax
ruby ruby: Install certificate for +openssl only (#11184) 2019-04-17 13:03:58 -05:00
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust Added rust 1.34.0 (#11200) 2019-04-16 18:32:11 -05:00
rust-bindgen
sabre
saga-gis PROJ.6 not yet supported in SAGA-GIS (#11768) 2019-06-17 21:39:05 -04:00
sailfish
salmon
sambamba
samblaster
samrai
samtools samtools package: Add version 1.5 and htslib 1.5 dependency (#10825) 2019-03-11 19:29:29 -05:00
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop
scalpel
scan-for-matches
scons scons: add version 3.0.5 (#11709) 2019-06-14 16:39:58 -05:00
scorec-core
scorep Update scorep and friends (#11523) 2019-05-21 12:28:12 +02:00
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sdsl-lite
seacas seacas: Update NetCDF version requirement (#10787) 2019-03-05 14:05:52 +01:00
sed
sentieon-genomics
seqan
seqprep
seqtk seqtk package: Add version 1.3 (#10743) 2019-03-07 13:16:20 -06:00
serf various package version updates and build fixes (#10775) 2019-03-05 11:59:47 -08:00
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid update license date range for simgrid 2019-05-10 04:37:56 +09:00
simplemoc
simul
simulationio
singularity Singularity package: add version 3.2.1 (#11833) 2019-06-24 18:20:23 -07:00
singularity-legacy Singularity package: new version, legacy builds, and root permissions (#11094) 2019-05-03 10:27:13 +09:00
sirius elpa: override headers prop for common include-dir localization 2019-05-10 03:43:02 +09:00
skilion-onedrive
sl New Package: sl (#11565) 2019-05-26 20:40:55 -05:00
slate SLATE package: fix variant/header errors (#11353) 2019-05-07 02:52:40 +09:00
sleef
slepc xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
slurm slurm: Add PMI support (#10683) 2019-02-25 13:05:31 -06:00
smalt
smof smof: new package at 2.13.1 (#11502) 2019-05-17 14:44:35 -05:00
smproxy
snakemake
snap snap: overwrite flags (#10832) 2019-03-07 14:53:04 -07:00
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
span-lite Update optional-lite and span-lite to use CMakePackage (#11407) 2019-05-20 13:04:06 -05:00
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite sqlite: add versions; restore old versions; variant resolves security issues. (#11336) 2019-05-11 02:58:23 +09:00
sqlitebrowser
squashfs squashfs should depend_on('zlib') (#11265) 2019-04-24 09:01:36 +09:00
squid
sra-toolkit sra-toolkit new version (#11111) 2019-04-08 08:56:49 +02:00
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks stacks package: add version 2.3b (#10653) 2019-02-22 19:16:44 -06:00
staden-io-lib
star STAR: Add versions 2.7.0d and 2.7.0e (#10831) 2019-03-11 19:44:54 -05:00
star-ccm-plus
startup-notification
stat various package version updates and build fixes (#10775) 2019-03-05 11:59:47 -08:00
stata
stc swift-t: New release packages for 1.4.3 (#11684) 2019-06-14 09:49:51 -05:00
steps
stow
strace strace: add 5.0 (#10940) 2019-03-20 04:48:13 +01:00
stream
strelka
stress
string-view-lite Update optional-lite and span-lite to use CMakePackage (#11407) 2019-05-20 13:04:06 -05:00
stringtie
structure
strumpack xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
sublime-text sublime-text: Miscellaneous improvements (#11154) 2019-04-17 13:44:34 -07:00
subread subread: add 1.6.4 (#11800) 2019-06-20 13:54:20 -05:00
subversion
suite-sparse fix suite-sparse built with tbb from intel-parallel-studio (#11134) 2019-05-15 11:03:19 -07:00
sumaclust
sundials sundials: add new version (4.1.0) (#10890) 2019-03-14 11:00:22 +01:00
superlu
superlu-dist xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
superlu-mt
supernova Supernova package: add version 2.1.1 (#11285) 2019-05-01 09:56:53 +09:00
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig
symengine symengine: add 0.4.0, fix dependency in dealii (#11473) 2019-05-16 12:23:21 +02:00
sympol
sz
tabix
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian xsdk: add/update maintainers to xsdk packages (#11146) 2019-04-18 08:20:22 -05:00
tassel
tau Package/tau/tau 2.28.1 update (#11591) 2019-05-31 10:01:19 -05:00
tcl added tix package and python variant for tix (#11599) 2019-06-06 17:19:24 -04:00
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh tcsh: change the download url, add version 6.21.00 (#11836) 2019-06-27 12:53:43 -04:00
tealeaf
templight
templight-tools
tetgen
tethex remove myself from maintainers of some packages (#11319) 2019-04-30 10:16:53 +02:00
texinfo
texlive update to texlive 2019 (#11365) 2019-05-09 13:47:43 -05:00
tfel Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). (#11109) 2019-04-08 09:09:14 +02:00
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust thrust: add versions 1.9.0-1.9.4 (#10823) 2019-03-07 14:36:59 +01:00
tig
time Download GNU packages from mirrors (Part 2) (#10555) 2019-02-20 09:08:42 -06:00
tinyxml
tinyxml2
tioga
tix added tix package and python variant for tix (#11599) 2019-06-06 17:19:24 -04:00
tk tk: avoid search for X headers and libraries (#11892) 2019-07-01 13:47:04 -04:00
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder transdecoder package: Add version 5.5.0 and fix up url and installation paths (#10745) 2019-03-06 20:58:50 -06:00
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos dtk@develop now requires 'submodules=True' flag (#11694) 2019-06-14 11:04:48 -05:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore trimgalore: Add versions 0.6.0 and 0.6.1 (#10981) 2019-03-22 11:18:45 +01:00
trimmomatic trimmomatic package: restrict java dependency to version 8 (#10741) 2019-03-07 13:49:57 -06:00
trinity
trinotate
trnascan-se
turbine swift-t: New release packages for 1.4.3 (#11684) 2019-06-14 09:49:51 -05:00
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx UCX package: add versions 1.5.1/1.5.2 (#11832) 2019-06-24 18:21:06 -07:00
udunits2
ufo-core
ufo-filters
umpire Update Umpire package with new versions (#11441) 2019-05-18 23:04:12 -05:00
unblur
uncrustify
unibilium
unifycr unifycr: dependency changes and new version (#10722) 2019-03-06 10:56:20 -08:00
unison
units
unittest-cpp Add support for new unittest-cpp package (#11575) 2019-05-28 15:21:24 -05:00
unixodbc
unuran
unzip
usearch
util-linux build fixes for util-linux (#10811) 2019-03-06 11:04:53 -08:00
util-macros new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
uuid
uvw uvw: new package (#10645) 2019-02-20 13:53:07 +01:00
valgrind
vampirtrace vampirtrace: patch for new mpich and openmpi versions (#10665) 2019-02-26 18:48:14 -06:00
vardictjava
varscan varscan: set VARSCAN_HOME variable to jar file location (#10744) 2019-03-12 20:29:48 -05:00
vc
vcftools
vcsh
vdt vdt: Add version 0.4.3 (#10982) 2019-03-22 11:57:30 +01:00
vecgeom Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518) 2019-02-13 22:51:26 -06:00
veclibfort
vegas2
veloc veloc package: add version 1.1 and update master dependencies (#11270) 2019-05-01 09:44:51 +09:00
velvet
verilator verilator: Fix FlexLexer.h not found (#11185) 2019-04-15 09:56:07 +02:00
verrou
videoproto
viennarna
viewres
vigra
vim
virtualgl mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk vtk, paraview, catalyst packages: Add maintainers (#11774) 2019-06-19 10:57:19 -07:00
vtkh
vtkm vtkm: fix the directory cmake looks for the source code (#11576) 2019-05-29 11:10:12 -04:00
wannier90
warpx Resources: use expanded archive name by default (#11688) 2019-06-20 11:09:31 -07:00
wcslib
wget wget: add version 1.20.3 (#11148) 2019-04-09 18:37:04 -05:00
wgsim
windowswmproto
wireshark
wordnet
workrave
wt
wtdbg2 wtdbg2: new package (#10639) 2019-02-27 13:27:45 -06:00
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm xcb-util-wm: add m4 build system dependency (#11056) 2019-04-04 13:11:02 +02:00
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd xfd package: use Spack-installed libintl (#11545) 2019-06-19 10:54:50 -07:00
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server mesa: re-written to new meson build system (#10482) 2019-05-01 17:57:33 -05:00
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd Xrootd: set PYTHON_EXECUTABLE with +python variant (#11581) 2019-05-29 15:41:30 -05:00
xrx
xsbench
xscope
xsd
xsdk xsdk@0.4.0: update dealii defaults wrt changes in a973ab475 (#11562) 2019-05-26 10:43:06 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd xtensor package: add version 0.20.7 and update dependencies (#11574) 2019-06-18 17:05:47 -07:00
xsm
xstdcmap
xtensor xtensor package: add version 0.20.7 and update dependencies (#11574) 2019-06-18 17:05:47 -07:00
xtensor-python xtensor package: add version 0.20.7 and update dependencies (#11574) 2019-06-18 17:05:47 -07:00
xterm
xtl xtensor package: add version 0.20.7 and update dependencies (#11574) 2019-06-18 17:05:47 -07:00
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash xxhash: edit prefix in Makefile for macOS (#10606) 2019-02-20 10:55:09 +01:00
xz Python: optional dependencies and post-installation tests (#10335) 2019-02-23 12:36:26 -06:00
yajl
yambo
yaml-cpp Make yaml-cpp build with libc++ (#10504) 2019-06-26 14:29:09 -07:00
yara added yara (#10901) 2019-03-20 04:55:02 +01:00
yasm
yorick
z3
zeromq
zfp zfp: Add 0.5.4 (#11016) 2019-04-08 09:11:28 +02:00
zip
zlib
zoltan Packages/zoltan (#10432) 2019-03-23 13:38:29 +01:00
zsh
zstd zstd: Add 1.4.0 (#11208) 2019-04-17 09:29:52 -05:00