28 lines
840 B
Python
28 lines
840 B
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Mefit(Package):
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"""This pipeline will merge overlapping paired-end reads, calculate
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merge statistics, and filter reads for quality."""
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homepage = "https://github.com/nisheth/MeFiT"
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git = "https://github.com/nisheth/MeFiT.git"
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version('1.0', commit='0733326d8917570bbf70ff5c0f710bf66c13db09')
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depends_on('py-numpy')
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depends_on('py-htseq')
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depends_on('jellyfish')
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depends_on('casper %gcc@4.8.5')
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def install(self, spec, prefix):
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install_tree('.', prefix)
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def setup_environment(self, spack_env, run_env):
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run_env.prepend_path('PATH', self.prefix)
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