45 lines
2.0 KiB
Python
45 lines
2.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RGviz(RPackage):
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"""Genomic data analyses requires integrated visualization
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of known genomic information and new experimental data. Gviz
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uses the biomaRt and the rtracklayer packages to perform live
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annotation queries to Ensembl and UCSC and translates this to
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e.g. gene/transcript structures in viewports of the grid
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graphics package. This results in genomic information plotted
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together with your data."""
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homepage = "http://bioconductor.org/packages/Gviz/"
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git = "https://git.bioconductor.org/packages/Gviz.git"
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version('1.20.0', commit='299b8255e1b03932cebe287c3690d58c88f5ba5c')
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depends_on('r@3.4.0:3.4.9', when='@1.20.0')
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-genomicranges', type=('build', 'run'))
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depends_on('r-xvector', type=('build', 'run'))
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depends_on('r-rtracklayer', type=('build', 'run'))
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depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-rcolorbrewer', type=('build', 'run'))
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depends_on('r-biomart', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-genomicfeatures', type=('build', 'run'))
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depends_on('r-bsgenome', type=('build', 'run'))
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depends_on('r-biostrings', type=('build', 'run'))
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depends_on('r-biovizbase', type=('build', 'run'))
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depends_on('r-rsamtools', type=('build', 'run'))
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depends_on('r-latticeextra', type=('build', 'run'))
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depends_on('r-matrixstats', type=('build', 'run'))
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depends_on('r-genomicalignments', type=('build', 'run'))
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depends_on('r-genomeinfodb', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-digest', type=('build', 'run'))
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