36 lines
1.3 KiB
Python
36 lines
1.3 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import os
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class Trf(Package):
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"""Tandem Repeats Finder is a program to locate and display tandem repeats
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in DNA sequences.
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Note: A manual download is required for TRF.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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http://spack.readthedocs.io/en/latest/mirrors.html"""
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homepage = "https://tandem.bu.edu/trf/trf.html"
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version('4.09', '0c594fe666e0332db1df9d160d7fabc8', expand=False,
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url='file://{0}/trf409.linux64'.format(os.getcwd()))
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version('4.07b', sha256='a3a760c7b74c9603fbc08d95e8fa696c00f35a2f179b0bd63b2b13757ad3b471', expand=False,
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url='file://{0}/trf407b.linux64'.format(os.getcwd()))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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trfname = 'trf{0}.linux64'.format(self.version.joined)
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install(trfname, prefix.bin)
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chmod = which('chmod')
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chmod('+x', os.path.join(prefix.bin, trfname))
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os.symlink(trfname, prefix.bin.trf)
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