Eric 60cc0b0b90 py-setuptools-git: Create new package (#7131)		2018-01-31 16:52:34 +01:00
..
abinit	Add Abinit 8.6.3 (#6959)	2018-01-20 10:20:00 -06:00
abyss	abyss: added missing libtool dependency (#7054)	2018-01-31 14:01:49 +01:00
ack	Version update for 2.22 (#7023)	2018-01-22 07:12:00 +01:00
activeharmony
adept-utils
adios
adios2	Cleanup: Remove Dbl Brackets (#6848)	2018-01-08 19:42:51 +01:00
adlbx
adol-c
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg
amg2013
amp
ampliconnoise
amr-exp-parabolic
amrex
andi
angsd
ant
antlr
ape
apex
applewmproto
appres
apr
apr-util
archer
argp-standalone	argp-standalone@1.3: new package (#7014)	2018-01-23 22:49:17 +01:00
argtable
arlecore
armadillo
arpack-ng
ascent	updates to conduit and ascent packages (new PR) (#6584)	2017-12-08 13:43:12 -08:00
asciidoc
aspa
aspell
aspell6-de
aspell6-en
aspell6-es
assimp
astra
astral
astyle	changed url for astyle (#6863)	2018-01-09 09:40:27 -06:00
atk
atlas
atom-dft	atom-dft: new package plus dependencies (#6653)	2018-01-02 20:32:37 -06:00
atompaw
atop
augustus	adding specific version url for augustus 3.3 due to old folder structure (#6813)	2018-01-02 19:24:28 -06:00
autoconf	Do not construct path to perl command manually (#6927)	2018-01-13 22:10:42 -06:00
autodock-vina
autogen
automaded
automake
bamtools	bamtools: Add version 2.5.1 (#6770)	2018-01-02 10:55:07 -08:00
bamutil
barrnap	barrnap: Create new package (#6855)	2018-01-08 19:35:31 -06:00
bash	Updated misc devel tools. (#6897)	2018-01-11 10:06:53 -06:00
bash-completion	Fix installation of bash-completion (#6911)	2018-01-14 15:40:22 -06:00
bats
bazel	bazel: include SPACK_DEBUG_LOG_ID in environment (#6562)	2017-12-11 10:34:06 -08:00
bbcp
bbmap
bcftools	bcftools is a AutotoolsPackage. (#6881)	2018-01-10 09:45:05 -06:00
bcl2fastq2
bdftopcf
bdw-gc
bear
beast2
bedtools2	bedtools2: Add version 2.27.1 (#6693)	2017-12-16 19:36:35 -07:00
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils	libtool, binutils: fix darwin linking (#7073)	2018-01-28 15:36:24 +01:00
bioawk
biopieces	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
bison
bitmap
blast-plus
blat
blaze
bliss
blitz	Blitz 1.0.1 (#6765)	2018-01-06 12:02:41 -06:00
bmake	bmake@20171207: new package (#7099)	2018-01-31 13:42:41 +01:00
bml
bohrium	add OctavePackage (#6746)	2018-01-02 20:03:27 -06:00
boost	Add boost 1.66.0 (#7000)	2018-01-20 17:10:25 +01:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
braker
branson
breakdancer	added breakdancer (#6319)	2017-12-14 14:43:32 -07:00
breseq	breseq: Create new package (#6648)	2017-12-16 19:47:11 -07:00
brigand
bsseeker2
bucky
busco
butter
bwa	bwa: added version 0.7.16a and checksum (#6658)	2017-12-16 19:43:02 -07:00
byobu
bzip2	Bzip2 now uses 'spack_cc' as a compiler, instead of plain 'cc' (#7074)	2018-01-26 09:52:04 +01:00
c-blosc
caffe
cairo	Updated i3 dependencies. (#6885)	2018-01-10 11:02:07 -06:00
caliper	Caliper update, add version 1.6.0 (#6680)	2017-12-16 19:39:52 -07:00
callpath
candle-benchmarks
cantera
canu	Do not construct path to perl command manually (#6927)	2018-01-13 22:10:42 -06:00
cap3
cares
cask
casper	casper: new package (#6873)	2018-01-09 22:07:05 -06:00
catalyst	Catalyst package (#6834)	2018-01-13 22:20:39 -06:00
catch	Updated catch to newer version (up to 2.1.0) (#6933)	2018-01-14 15:39:10 -06:00
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo	Package 'cdo': get rid of unnecessary dependency on MPI C++ library. (#6632)	2017-12-16 19:48:56 -07:00
cereal
cfitsio	Version update for cfitsio (#7032)	2018-01-23 09:44:40 +01:00
cgal
cgm
cgns
charm
check
chlorop
chombo
cityhash
clamr
cleaveland4
cleverleaf
clfft
clhep	Fix GEANT4 and make more portable and flexible (#6956)	2018-01-23 10:13:08 +01:00
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake	Updated misc devel tools. (#6897)	2018-01-11 10:06:53 -06:00
cmocka
cmor
cnmem
cnpy
cns-nospec
cntk
cntk1bitsgd
codar-cheetah
coevp
cohmm
coinhsl	coinhsl: add version 2014.01.10 (#6909)	2018-01-12 17:27:52 -06:00
comd
compiz
compositeproto
conduit	updates to conduit and ascent packages (new PR) (#6584)	2017-12-08 13:43:12 -08:00
constype
converge
coreutils
corset
cosmomc
cosp2
cp2k
cppad
cppcheck	Add version 1.81 of cppcheck (#6912)	2018-01-14 08:14:55 -06:00
cpprestsdk
cppunit
cppzmq
cram
cryptopp
cscope
csdp
ctffind	Add a package: ctffind. (#6836)	2018-01-05 13:46:48 -06:00
cub
cube
cuda	CUDA: 9.1 (#6663)	2017-12-13 14:43:40 +01:00
cuda-memtest
cudnn
cufflinks
cups
curl	make nghttp2 optional for curl, as it does not build for older compilers. (#5977)	2018-01-04 09:45:45 -06:00
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dbus
dealii	dealii: update CMake dependency (#7010)	2018-01-20 21:59:24 +01:00
dejagnu
delly2
denovogear	DeNovoGear: Create new package (#6699)	2017-12-16 19:34:53 -07:00
dia	Fix gtkplus build by hardcoding X11 support (#6971)	2018-01-23 15:24:20 -08:00
dialign-tx
diamond	new package: DIAMOND (#6793)	2018-01-02 12:03:45 -08:00
direnv
discovar
discovardenovo	discovardenovo: adding new package (#6888)	2018-01-10 20:40:41 -06:00
dlpack
dmlc-core
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dtcmp
dyninst
ea-utils
easybuild
ebms
eccodes
ecp-proxy-apps
editres
eigen
elemental	new package: essl (#6335)	2018-01-26 10:38:37 -08:00
elfutils
elk
elpa
emacs	Fix gtkplus build by hardcoding X11 support (#6971)	2018-01-23 15:24:20 -08:00
emboss
encodings
environment-modules
es
esmf	Esmf fixes for Cray, OSX and mpich (#6768)	2018-01-02 19:43:55 -06:00
espresso
essl	new package: essl (#6335)	2018-01-26 10:38:37 -08:00
ethminer	A new package: ethminer. (#6908)	2018-01-12 07:50:07 -06:00
etsf-io
everytrace
everytrace-example
evieext
exabayes
exampm
exasp2
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
f90cache
falcon
farmhash
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree	Feature/fasttree (#6227)	2017-12-20 19:10:24 -08:00
fastx-toolkit
fenics
ferret
ffmpeg
fftw	fftw: added version 3.3.7 (#6678)	2017-12-14 21:38:33 +01:00
fimpute
findutils
fio
fish
fixesproto
flac
flang	clang,flang: update CC, CXX environment in installation module (#6737)	2017-12-22 07:32:10 +01:00
flann
flash
flecsale
flecsi
flex	flex: restrict GCC conflict to newer Ubuntu releases (#6963)	2018-01-20 21:36:45 +01:00
flint
flit
fltk	fltk depends on libx11. (#6816)	2018-01-03 10:14:51 -06:00
flux
fmt
foam-extend	ENH: improved openfoam module creation (issue #4942)	2017-12-20 11:32:33 -08:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fpc
freebayes
freetype
fseq
fsl
fslsfonts
fstobdf
funhpc
gapbs
gapcloser
gapfiller
gasnet
gatk	gatk: boilerplate cleanup (#6744)	2018-01-02 20:05:04 -06:00
gaussian
gawk
gblocks
gcc	gcc: add version 7.3.0 (#7097)	2018-01-31 13:41:12 +01:00
gccmakedep
gccxml	add patch for gccxml with gcc@5: (#6913)	2018-01-13 08:46:00 -06:00
gconf
gdal
gdb	Updated misc devel tools. (#6897)	2018-01-11 10:06:53 -06:00
gdbm	Updated i3 dependencies. (#6885)	2018-01-10 11:02:07 -06:00
gdk-pixbuf
geant4	Fix GEANT4 and make more portable and flexible (#6956)	2018-01-23 10:13:08 +01:00
gearshifft	Cleanup: Remove Dbl Brackets (#6848)	2018-01-08 19:42:51 +01:00
gemmlowp
genemark-et
genometools
geos
gettext
gflags
ghostscript	Fix missing dependency in ghostscript (#6866)	2018-01-09 08:43:53 -06:00
ghostscript-fonts
giflib
git	Fix tests for git package (#6869)	2018-01-10 13:47:38 +01:00
git-lfs
gl2ps
glew
glib	glib: Fix python handling (#6910)	2018-01-13 08:50:06 -06:00
glm
global
globalarrays
globus-toolkit	globus-toolkit: add version and openssl dependency (#6617)	2017-12-18 15:23:56 -08:00
glog
glpk
glproto
gmake
gmap-gsnap	gmap-gsnap: adding version 2014_12_28 (#6720)	2017-12-22 06:56:58 +01:00
gmime
gmp
gmsh	gmsh: add 3.0.6 (#6718)	2017-12-19 08:31:23 +01:00
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go
go-bootstrap
gobject-introspection
googletest
gotcha
gource
gperf
gperftools
grackle	Update grackle (#6822)	2018-01-03 21:35:17 +01:00
gradle
grandr
graphlib
graphmap
graphviz	Reworked the graphviz package (#6865)	2018-01-15 15:26:14 +01:00
grib-api
groff
gromacs
gsl
gslib	new package: gslib (#6328)	2018-01-23 10:42:06 -08:00
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus	Fix gtkplus build by hardcoding X11 support (#6971)	2018-01-23 15:24:20 -08:00
gts
guidance
guile
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop	Hadoop: Replace broken url (#6671)	2017-12-16 19:42:03 -07:00
hapcut2
haploview
harfbuzz
harminv
hdf
hdf5
hdf5-blosc
help2man
hepmc
heppdt
highfive
highwayhash
hisat2
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hunspell
hwloc
hybpiper
hydra
hypre	hypre: add 2.13.0 (#6726)	2017-12-19 15:39:27 +01:00
i3	Updated i3 dependencies. (#6885)	2018-01-10 11:02:07 -06:00
ibmisc
iceauth
icedtea	Fix gtkplus build by hardcoding X11 support (#6971)	2018-01-23 15:24:20 -08:00
icet
ico
icu4c
id3lib
idba
igraph
igv	IGV: new package (#6710)	2017-12-18 19:37:09 -08:00
ilmbase
image-magick
imake
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn	Intel mkl dnn (#6268)	2018-01-02 21:27:34 -06:00
intel-mpi
intel-parallel-studio	fix ips 2018 vtune directory name (#6893)	2018-01-11 09:51:14 -06:00
intel-tbb	intel-tbb: add 2018.2 (#6725)	2017-12-19 15:39:42 +01:00
intltool
ior
iozone
ipopt	ipopt: add version 3.12.9 (#6982)	2018-01-20 19:11:18 +01:00
isaac
isaac-server
isl
itstool
itsx
jags	jags: lapack fix (#6764)	2018-01-02 19:57:54 -06:00
jansson
jasper
jbigkit	A new package: jbigkit. (#6847)	2018-01-09 10:03:31 -06:00
jdk
jellyfish	casper: new package (#6873)	2018-01-09 22:07:05 -06:00
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
kahip
kaks-calculator
kaldi	Install all the cli tools from all the sub-directories (#6705)	2018-01-02 20:14:39 -06:00
kallisto
kbproto
kdiff3
kealib
kentutils
kmergenie
kokkos
kraken
krims
kripke
kvasir-mpl
laghos	laghos: inject CXX (#6664)	2017-12-12 17:26:02 -07:00
lammps
last
latte
launchmon
lazyten
lbann	Lbann package: bug fix (#7066)	2018-01-25 12:10:37 -08:00
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion
leveldb
lftp	lftp: adding version 4.6.4 (#6721)	2017-12-19 08:19:33 +01:00
libaec
libaio	Fix in download url for package libaio (#6616)	2017-12-08 10:20:14 -07:00
libapplewm
libarchive	libarchive@3.3.2: new version (#7113)	2018-01-31 13:39:58 +01:00
libassuan
libatomic-ops
libbeagle
libbsd
libbson	libbson, libmongoc: Update to 1.9.1 (#6900)	2018-01-11 10:19:44 -06:00
libcanberra
libcap
libcerf
libcint
libcircle
libconfig
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libev	Added i3 and its dependencies. (#6805)	2018-01-04 14:45:25 -06:00
libevent
libevpath
libfabric	Added v1.4.2 to libfabric package (#7053)	2018-01-31 14:02:21 +01:00
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgit2	Added libgit2@0.26.0 (#6952)	2018-01-20 21:57:41 +01:00
libgpg-error
libgpuarray
libgridxc	atom-dft: new package plus dependencies (#6653)	2018-01-02 20:32:37 -06:00
libgtextutils
libharu	package libharu: Add build deps (#6883)	2018-01-10 12:28:32 -06:00
libhio
libice
libiconv	Older versions of libiconv don't work with newer versions of GCC (#6829)	2018-01-10 09:47:33 -06:00
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
libmatheval
libmesh
libmng
libmongoc	libbson, libmongoc: Update to 1.9.1 (#6900)	2018-01-11 10:19:44 -06:00
libmonitor
libnbc
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libpng
libpsl
libpthread-stubs
libquo
libsigsegv
libsm
libsodium	libsodium: Update to 1.0.15 (#6643)	2017-12-11 17:27:09 -07:00
libspatialindex
libsplash
libssh2	Added added libssh2@1.8.0 (#6951)	2018-01-20 21:56:55 +01:00
libsvm
libszip
libtermkey
libtiff	Add libtiff@3. (#6818)	2018-01-03 10:02:45 -06:00
libtool	libtool, binutils: fix darwin linking (#7073)	2018-01-28 15:36:24 +01:00
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite	Fix GEANT4 and make more portable and flexible (#6956)	2018-01-23 10:13:08 +01:00
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon	Added i3 and its dependencies. (#6805)	2018-01-04 14:45:25 -06:00
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm	LIBXSMM 1.8.2 (#6896)	2018-01-21 09:14:26 -06:00
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid	Do not construct path to perl command manually (#6927)	2018-01-13 22:10:42 -06:00
linkphase3
linux-headers
listres
llvm	llvm: add version 5.0.1 (#6957)	2018-01-20 21:09:31 +01:00
llvm-lld
llvm-openmp-ompt
lmdb
lmod	Relax restriction on lua version. (#5886)	2017-12-08 20:52:00 +01:00
lndir
log4cplus	A new package: log4cplus. (#7015)	2018-01-23 09:47:34 +01:00
log4cxx
lrslib
lrzip
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv	A new package: lumpy-sv. (#7009)	2018-01-20 18:38:31 +01:00
lwgrp
lwm2
lz4	lz4@1.8.1.2: new version (#7111)	2018-01-31 13:40:32 +01:00
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
maq	maq: Create new package. (#7133)	2018-01-31 13:12:43 +01:00
mariadb
masa
masurca
matio
matlab
maven
maverick
mawk
mbedtls
mcl
mdtest
meep
mefit	mefit: Create new package. (#6700)	2017-12-16 19:34:30 -07:00
memaxes
meme
meraculous
mercurial	fix post install method for py3 in mercurial (#6497)	2017-12-17 12:00:58 -06:00
mesa	Update gl/qt options for vtk package (#6551)	2018-01-22 10:46:44 -08:00
mesa-glu
meshkit
meson
mesquite
metaphysicl
metasv	MetaSV: adding new package (#6691)	2017-12-16 19:36:11 -07:00
metis	Provide build_type variant for Metis. (#6808)	2018-01-05 13:45:21 -06:00
mfem
microbiomeutil
minced	MinCED: Create new package (#6815)	2018-01-02 19:25:08 -06:00
miniaero
miniamr
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc	miniqmc: initial commit (#6991)	2018-01-19 09:38:21 -07:00
minisign	Add new package minisign (#6644)	2017-12-11 17:27:40 -07:00
minismac2d
minitri
minixyce
mira
mirdeep
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab
molcas
mono
mosh
mothur
motif	Fix GEANT4 and make more portable and flexible (#6956)	2018-01-23 10:13:08 +01:00
motioncor2	Create a symbolic link to the MotionCor2_x.x.x executable. (#6826)	2018-01-04 21:27:59 -06:00
mozjs
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
msgpack-c
mshadow
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2
mxml
mxnet
nag
nalu	Adding option to build Nalu with Hypre support. (#6782)	2018-01-02 19:42:47 -06:00
namd
nano
nanoflann
nasm
nauty
ncbi-rmblastn
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses	Emacs: added gnutls variant (tested on Centos 7) (#6711)	2017-12-19 08:36:54 +01:00
ncview
ndiff
nek5000	Adding Nek5000 to Spack (#6153)	2018-01-04 09:41:53 -06:00
nekbone	Adding Nek5000 to Spack (#6153)	2018-01-04 09:41:53 -06:00
nekcem	Add NekCEM package to spack (#6509)	2017-12-08 10:30:42 -07:00
neovim	Fix reference to self.versions in neovim package (#6639)	2017-12-10 21:43:49 +01:00
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack	netlib-xblas 1.0.248: new package (#7024)	2018-01-24 08:28:05 +01:00
netlib-scalapack
netlib-xblas	netlib-xblas 1.0.248: new package (#7024)	2018-01-24 08:28:05 +01:00
nettle
neuron	Adding NEURON simulator package (#5097)	2018-01-04 09:55:30 -06:00
nextflow	nextflow: adding version 0.21.0 (#6722)	2017-12-19 09:07:33 +01:00
nfft
nghttp2
nginx	Updated 'nginx' from v1.12.0 to v1.13.8. (#6810)	2018-01-02 19:29:47 -06:00
ngmlr
ninja
ninja-fortran
nlopt
nmap
nnvm
node-js
notmuch
npb
npm
npth
nspr
numactl
numdiff
nut
nwchem
ocaml	ocaml@4.06.0: new version (#7078)	2018-01-31 13:49:17 +01:00
oce
oclock
octave
octave-optim	add OctavePackage (#6746)	2018-01-02 20:03:27 -06:00
octave-splines	add OctavePackage (#6746)	2018-01-02 20:03:27 -06:00
octave-struct	add OctavePackage (#6746)	2018-01-02 20:03:27 -06:00
octopus
of-adios-write
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2	opa-psm2: new package (#6874)	2018-01-10 09:45:34 -06:00
opam	opam: new package (#7079)	2018-01-31 13:44:09 +01:00
opari2
openbabel
openblas
opencoarrays
opencv
openexr
openfast	Updating OpenFAST to use explicit lapack and blas libraries from Spack. (#6824)	2018-01-06 12:01:06 -06:00
openfoam-com	package openfoam-com: add version 1712 and update patches (#6820)	2018-01-03 11:30:10 -08:00
openfoam-org	Explicitly cast Version to str in openfoam-org (#6880)	2018-01-10 13:48:22 +01:00
openfst
opengl	Update gl/qt options for vtk package (#6551)	2018-01-22 10:46:44 -08:00
openjpeg
openmc
openmpi
opennurbs
openscenegraph
openspeedshop
openssh
openssl	Revert "openssl: Add perl dependency" (#6831)	2018-01-04 16:46:24 -06:00
opium
opus
orfm
orthomcl
osu-micro-benchmarks
otf
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pandaseq	PANDAseq: Create new package (#6694)	2017-12-16 19:35:48 -07:00
pango	Add url_for_version to pango package (#6939)	2018-01-15 14:05:27 -06:00
papi
paradiseo
parallel
parallel-netcdf
paraver
paraview	Fix build of paraview (#5802)	2018-01-04 09:47:17 -06:00
parmetis	Fix type issues with setting flag handlers (#6960)	2018-01-18 17:55:44 -08:00
parmgridgen
parsimonator
parsplice
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbmpi
pcma
pcre	Updated i3 dependencies. (#6885)	2018-01-10 11:02:07 -06:00
pcre2
pdsh
pdt
pegtl
pennant
percept	new package: Percept (#6636)	2017-12-14 18:11:47 -08:00
perl
perl-algorithm-diff
perl-app-cmd	perl-app-cmd: Create new package (#7019)	2018-01-22 07:09:34 +01:00
perl-array-utils	perl-array-utils: Create new package (#7020)	2018-01-22 07:10:17 +01:00
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-capture-tiny
perl-carp-clan	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-class-data-inheritable
perl-class-inspector	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-class-load
perl-class-load-xs
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5	perl-digest-md5: Create new package (#6852)	2018-01-08 19:35:48 -06:00
perl-dist-checkconflicts
perl-encode-locale	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-eval-closure
perl-exception-class
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-file-listing	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-file-pushd
perl-file-sharedir-install	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-file-slurp-tiny	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-file-which	create perl-file-which package (#6800)	2018-01-02 19:36:59 -06:00
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-graph	perl-graph: Create new package (#7022)	2018-01-22 07:10:58 +01:00
perl-html-parser	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-html-tagset	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-http-cookies	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-http-daemon	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-http-date	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-http-message	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-http-negotiate	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-inline	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-inline-c	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-intervaltree
perl-io-html	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-io-sessiondata	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-io-socket-ssl	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-io-string
perl-list-moreutils	perl-list-moreutils: Create new package (#6997)	2018-01-20 19:09:23 +01:00
perl-log-log4perl
perl-lwp	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-lwp-mediatypes	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-lwp-protocol-https	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-math-cdf
perl-module-build
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-mro-compat
perl-namespace-clean
perl-net-http	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-net-ssleay	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-params-util
perl-parse-recdescent	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-pdf-api2
perl-pegex	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-perlio-gzip	perl-perlio-gzip: Create new package (#7018)	2018-01-22 07:08:41 +01:00
perl-soap-lite	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-star-fusion
perl-statistics-descriptive	Perl-statistics-descriptive: Create new package (#6588)	2017-12-08 10:22:16 -07:00
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-swissknife	perl-swissknife: Create new package (#6851)	2018-01-08 18:46:51 -06:00
perl-task-weaken	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-test-warn
perl-test-warnings
perl-text-diff
perl-text-unidecode	perl-text-unidecode: Create new package (#6854)	2018-01-08 18:45:58 -06:00
perl-time-hires	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-time-piece	perl-time-piece: Create new package (#6853)	2018-01-08 18:46:16 -06:00
perl-try-tiny	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-uri	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-uri-escape
perl-version	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-www-robotrules	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-xml-libxml	perl-xml-libxml: adding perl module (#6783)	2018-01-02 19:42:09 -06:00
perl-xml-parser
perl-xml-parser-lite	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
perl-xml-simple	perl-xml-simple: Create new package (#6849)	2018-01-08 19:36:04 -06:00
perl-yaml-libyaml	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
petsc	Add petsc version 3.8.3 (#6688)	2017-12-16 19:37:35 -07:00
pexsi
pfft
pflotran
pfunit	new package: Pfunit: unit testing framework for Fortran (#6795)	2018-01-02 12:18:08 -08:00
pgdspider
pgi
phantompeakqualtools
phasta
phylip
picard	picard: Add version 2.17.0 (#6729)	2017-12-20 13:28:37 +01:00
pidx
pigz
piranha
pixman
pkg-config
pkgconf	Updated i3 dependencies. (#6885)	2018-01-10 11:02:07 -06:00
planck-likelihood
plasma
plink
plumed
pmgr-collective
pmix
pnfft
pngwriter	PNGwriter: 0.7.0 (#7026)	2018-01-31 14:34:52 +01:00
poamsa
pocl
polymake
porta
portage
postgresql
ppl
prank
presentproto
preseq
price
primer3
printproto
probconsrna
prodigal	prodigal: Create new package (#6870)	2018-01-09 12:57:58 -06:00
proj
protobuf	Protobuf package: allow building shared library (#7067)	2018-01-25 12:14:48 -08:00
proxymngr
pruners-ninja
ps-lite
psi4
pstreams
pugixml
pumi
pvm
py-3to2
py-4suite-xml
py-abipy
py-adios	New Package: py-adios (#5686)	2018-01-02 21:37:59 -06:00
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy	Fix AstroPy: Missing Markupsafe (#6630)	2017-12-08 10:21:46 -07:00
py-attrs
py-autopep8	Update py-autopep8 to 1.3.3 (#6914)	2018-01-13 22:05:44 -06:00
py-babel
py-backports-abc
py-backports-functools-lru-cache	Update py-backports-functools-lru-cache to 1.4 (#6915)	2018-01-14 15:39:53 -06:00
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython	package py-biopython: remove py-mx dependency (#6772)	2018-01-02 10:59:21 -08:00
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-brian
py-brian2
py-bsddb3
py-bx-python	py-bx-python: Create new package (#6672)	2017-12-16 19:38:59 -07:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-click
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-dev
py-dill
py-dlcpar
py-docutils
py-doxypy	py-doxypy conflicts python3 (#6916)	2018-01-13 22:07:14 -06:00
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant	Update py-elephant to 0.4.1 (#6917)	2018-01-13 08:44:43 -06:00
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear
py-flake8	Update py-flake8 to 3.5.0 (#6918)	2018-01-13 22:07:46 -06:00
py-flask
py-flexx
py-fparser	Py-fparser: python parser for Fortran code (#6794)	2018-01-14 15:42:17 -06:00
py-funcsigs
py-functools32
py-future
py-futures
py-genders
py-genshi
py-git2
py-git-review	add version 1.26 to py-git-review and fix run_env (#6919)	2018-01-13 22:08:05 -06:00
py-gnuplot
py-griddataformats
py-guidata
py-guiqwt
py-h5py	Py h5py update (#6635)	2017-12-11 17:26:13 -07:00
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazyarray
py-libconf
py-libensemble
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-lockfile
py-logilab-common
py-lrudict	py-lrudict: a LRU-based cache dictionary (#6734)	2018-01-02 20:10:49 -06:00
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib
py-mccabe	Add py-mccabe versions up to 0.6.1 (#6920)	2018-01-13 22:08:18 -06:00
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-misopy
py-mistune
py-mock
py-moltemplate	moltemplate: add new package (#6702)	2017-12-16 19:33:28 -07:00
py-mongo	Fix pymongo package (#6832)	2018-01-05 08:47:36 -06:00
py-monotonic
py-monty
py-mpi4py	Cython only needed for develop version of mpi4py (#6780)	2018-01-02 11:34:24 -08:00
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-nbconvert
py-nbformat
py-neo	Update py-neo to 0.5.2 (#6921)	2018-01-13 22:08:38 -06:00
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr
py-numpy
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator	openPMD-validator (#7064)	2018-01-31 13:59:38 +01:00
py-openpyxl
py-ordereddict
py-oset
py-packaging
py-palettable
py-pandas	py-pandas: add versions 0.19.2 and 0.21.1 (#6687)	2017-12-16 19:38:02 -07:00
py-paramiko
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-plotly	Add: Py-Plotly (#6628)	2017-12-08 10:21:28 -07:00
py-ply
py-pmw
py-pox
py-ppft
py-prettytable
py-proj
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone	py-psyclone: Parallelisation System for climate models (#6797)	2018-01-06 12:02:13 -06:00
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani	py-pyani: Create new package (#6811)	2018-01-02 19:27:42 -06:00
py-pyasn1
py-pybedtools	py-pybedtools: Create new package (#6487)	2018-01-05 15:08:22 -06:00
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle	Add py-pycodestyle versions up to 2.3.1 (#6922)	2018-01-13 22:08:51 -06:00
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyfasta
py-pyfftw
py-pyflakes	Add py-pyflakes versions up to 1.6.0 (#6923)	2018-01-13 22:09:17 -06:00
py-pygments
py-pygobject
py-pygtk	Fix gtkplus build by hardcoding X11 support (#6971)	2018-01-23 15:24:20 -08:00
py-pylint
py-pymatgen
py-pyminifier
py-pympler
py-pynn	Add PyNN 0.9.1 (#6926)	2018-01-13 22:10:10 -06:00
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam	py-pysam: adding old version 0.7.7 (#6675)	2017-12-13 09:01:45 +01:00
py-pyscaf
py-pyserial
py-pyside
py-pysocks
py-pytables
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-gitlab
py-pythonqwt
py-pytz	Add: Py-Plotly (#6628)	2017-12-08 10:21:28 -07:00
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-radical-utils
py-ranger
py-readme-renderer
py-regex
py-reportlab
py-requests	Add: Py-Plotly (#6628)	2017-12-08 10:21:28 -07:00
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc	new package: py-rseqc (#6773)	2018-01-02 11:10:55 -08:00
py-rtree
py-saga-python
py-scandir	py-scandir: a better directory iterator, backport to 2.7 (#6739)	2018-01-02 20:08:58 -06:00
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy
py-seaborn
py-setuptools
py-setuptools-git	py-setuptools-git: Create new package (#7131)	2018-01-31 16:52:34 +01:00
py-setuptools-scm
py-sfepy
py-sh
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six	Add: Py-Plotly (#6628)	2017-12-08 10:21:28 -07:00
py-slepc4py
py-sncosmo
py-snowballstemmer
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-tetoolkit	py-tetoolkit: Create new package (#6673)	2017-12-16 19:38:36 -07:00
py-theano
py-tifffile
py-toml
py-tomopy
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-umi-tools	py-umi-tools: Create new package (#6823)	2018-01-04 08:55:37 -06:00
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr	py-xattr: a python interface to access extended file attribute (#6747)	2018-01-02 20:02:03 -06:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yapf
py-yt
py-zmq
python	Handle test dependencies that are python extensions (#6904)	2018-01-12 19:02:54 -08:00
qbank
qbox
qhull
qmcpack	QMCPACK package: update blas/lapack detection (#6753)	2017-12-22 16:47:49 -08:00
qmd-progress
qrupdate
qt	Update gl/qt options for vtk package (#6551)	2018-01-22 10:46:44 -08:00
qt-creator
qtgraph
qthreads
quinoa
qwt
r	Tell R's configure about tcltk config (#7085)	2018-01-26 20:51:38 -06:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-beanplot
r-bh
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle	r-biocstyle: Create new package. (#6503)	2018-01-10 23:13:31 -06:00
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-bookdown	r-bookdown: Create new package. (#6504)	2018-01-10 23:13:12 -06:00
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-callr
r-car
r-caret
r-category
r-catools
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger
r-ellipse
r-ensembldb
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-ff
r-fftwtools
r-fgsea
r-filehash
r-flashclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma
r-gdata
r-gdsfmt	r-gdsfmt: new package (#7035)	2018-01-23 09:42:10 +01:00
r-geiger
r-genefilter
r-geneplotter
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-geomorph
r-geoquery
r-geosphere
r-getopt	r-getopt: new package (#6973)	2018-01-20 19:18:07 +01:00
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-gosemsim
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mime
r-minfi
r-minqa
r-mixtools
r-mlbench
r-mlinterfaces
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-pamr
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phantompeakqualtools
r-phyloseq
r-pkgconfig
r-pkgmaker
r-plogr
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomforest
r-ranger
r-rappdirs	r-rappdirs: Create new package. (#6891)	2018-01-14 15:41:32 -06:00
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppcctz
r-rcppeigen
r-rcppprogress
r-rcurl	package r-rcurl: boilerplate cleanup (#6771)	2018-01-02 10:58:03 -08:00
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgeos	r-rgeos: Create new package. (#6592)	2018-01-04 09:01:17 -06:00
r-rgl
r-rgooglemaps
r-rgraphviz	r-rgraphviz: Create new package. (#6316)	2018-01-04 09:37:00 -06:00
r-rhdf5
r-rhtslib
r-rinside
r-rjags	package/r-rjags: create new package (#6804)	2018-01-03 10:17:15 -06:00
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown	r-rmarkdown: Update version to 1.7 (#6506)	2018-01-10 23:12:35 -06:00
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot	r-rprojroot: Create new package. (#6505)	2018-01-10 23:12:54 -06:00
r-rsamtools
r-rsnns
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seurat
r-sfsmisc
r-shape
r-shiny
r-shortread
r-siggenes
r-simpleaffy
r-sn
r-snow
r-snprelate	r-snprelate: new package (#7036)	2018-01-23 09:43:22 +01:00
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spdep
r-speedglm
r-sqldf
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tiff
r-tigris
r-timedate
r-topgo
r-trimcluster
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
raft
raja
randfold
random123
randrproto
ravel
raxml
ray
rdp-classifier
re2c	re2c@1.0.3: new package (#7092)	2018-01-31 13:46:17 +01:00
readline
recordproto
redundans
relion	relion - added new stable version 2.1 (#6706)	2017-12-18 10:38:20 -08:00
rempi
rename
rendercheck
renderproto
repeatmasker	Do not construct path to perl command manually (#6927)	2018-01-13 22:10:42 -06:00
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab	Rmlab: Control PNG (#6846)	2018-01-08 09:14:38 -06:00
rna-seqc	rna-seqc package: JAVA_{ARGS,OPTS} for helper script (#6972)	2018-01-29 20:23:59 -08:00
rockstar
root
rose
rr
rsbench
rsem	rsem: update version 1.3.0 md5sum (#6650)	2018-01-02 21:15:40 -06:00
rstart
rsync
rtags	rtags: add 2.17 and for now comment-out 2.12 (#7126)	2018-01-31 13:36:22 +01:00
rtax
ruby	ruby: fix +openssl & +readline variants (#6935)	2018-01-15 09:00:07 -06:00
ruby-gnuplot	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
ruby-narray	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
ruby-rubyinline	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
ruby-terminal-table	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
rust
rust-bindgen
sabre
sailfish	sailfish: Create new package (#6827)	2018-01-05 15:08:45 -06:00
salmon
sambamba
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scalpel
scan-for-matches	new packages: biopieces and dependencies (#6478)	2017-12-12 18:35:13 -08:00
scons
scorec-core
scorep
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shortstack
showfont
sickle
siesta	Siesta: only apply patch to <4.1 and fix Intel compiler (#6466)	2018-01-06 12:03:54 -06:00
signalp
signify	Add new package signify (#6645)	2017-12-16 19:47:59 -07:00
silo
simplemoc
simul
simulationio
singularity	singularity - added master branch (#6631)	2018-01-02 21:47:21 -06:00
slepc	slepc: add 3.8.2 (#6724)	2017-12-19 15:40:30 +01:00
slurm	Fix gtkplus build by hardcoding X11 support (#6971)	2018-01-23 15:24:20 -08:00
smalt
smc
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles	sniffles: add version 1.0.7 (#7004)	2018-01-20 18:39:29 +01:00
snptest
soap2
soapindel
soapsnp
somatic-sniper
sortmerna
sosflow
sowing
sox
spades	SPAdes: add version 3.11.1 (#6668)	2017-12-13 08:57:29 +01:00
spark
sparsehash
sparta
spdlog
spectrum-mpi	Set SMPI library path in dependent packages (#6548)	2018-01-04 09:10:37 -06:00
speex
sph2pipe
spherepack
spindle
spot
sqlite	sqlite package: apply B0 patch to additional versions (#6728)	2017-12-19 11:06:39 -08:00
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification	Added i3 and its dependencies. (#6805)	2018-01-04 14:45:25 -06:00
stat
stc	fix swift-t packages dependencies (#6530)	2018-01-08 17:25:15 +01:00
stream
strelka
stress
stringtie
structure
sublime-text
subread
subversion
suite-sparse	suite-sparse: support 64bit BLAS (#6767)	2018-01-03 09:58:19 -06:00
sumaclust
sundials
superlu
superlu-dist
superlu-mt
sw4lite
swarm
swfft	swfft: inject CC/CXX (#6666)	2017-12-12 17:25:48 -07:00
swiftsim
swig
symengine
sympol
sz
tabix
talloc
tantan	new package: tantan (#6792)	2018-01-02 12:00:13 -08:00
tar
targetp
task
taskd
tasmanian	tasmanian: add new package (#6659)	2017-12-13 16:01:51 +01:00
tassel
tau
tcl
tcoffee
tcsh
tealeaf
tetgen
tethex
texinfo	Updated misc devel tools. (#6897)	2018-01-11 10:06:53 -06:00
texlive
the-platinum-searcher
the-silver-searcher
thrift
thrust
tig
tinyxml
tinyxml2
tioga	Tioga package: Explicitly list MPI compilers for Cmake (#6741)	2018-01-02 13:14:22 -08:00
tk
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
trf
triangle
trilinos
trimgalore
trimmomatic
turbine	fix swift-t packages dependencies (#6530)	2018-01-08 17:25:15 +01:00
turbomole
tut
twm
tycho2
typhonio
uberftp
ucx	ucx: update for release 1.2.2 (#6990)	2018-01-18 13:41:16 -07:00
udunits2
ufo-core
ufo-filters
unblur	Add a new package: unblur. (#6867)	2018-01-10 09:35:00 -06:00
uncrustify
unibilium
unison
units
unixodbc
usearch
util-linux
util-macros
uuid
valgrind	Updated misc devel tools. (#6897)	2018-01-11 10:06:53 -06:00
vampirtrace
vardictjava
varscan
vc
vcftools	Do not construct path to perl command manually (#6927)	2018-01-13 22:10:42 -06:00
vcsh
vdt
vecgeom
veclibfort
vegas2
velvet
videoproto
viennarna
viewres
vim	make vim python3 compatible (#6925)	2018-01-14 15:39:33 -06:00
virtualgl
visit	Visit 2.13.0 (#6947)	2018-01-21 09:16:23 -06:00
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-moo
votca-tools
votca-xtp
vpfft
vpic
vsearch
vtk	Update gl/qt options for vtk package (#6551)	2018-01-22 10:46:44 -08:00
vtkh	updates to conduit and ascent packages (new PR) (#6584)	2017-12-08 13:43:12 -08:00
vtkm
wannier90
wget
windowswmproto
wt
wx	Fix gtkplus build by hardcoding X11 support (#6971)	2018-01-23 15:24:20 -08:00
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm	Added i3 and its dependencies. (#6805)	2018-01-04 14:45:25 -06:00
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhost
xineramaproto
xinit
xinput
xios	xios: I/O management for climate models (#6796)	2018-01-04 08:58:24 -06:00
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90	atom-dft: new package plus dependencies (#6653)	2018-01-02 20:32:37 -06:00
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsdk	xsdk: update xsdk@develop to use sundials, plasma, magma (#6649)	2017-12-12 09:31:08 -08:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xz
yajl
yaml-cpp	Update checksum for version 0.5.3 of yaml-cpp (#6924)	2018-01-13 22:09:36 -06:00
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh
zstd