60ee4199f5
Add `manual_download = True` to packages that need to do manual downloads but do not have the `manual_download attribute set. This provides a message when installing these packages rather than a generic fetch error.
42 lines
1.6 KiB
Python
42 lines
1.6 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os.path
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from spack import *
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class SentieonGenomics(Package):
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"""Sentieon provides complete solutions for secondary DNA analysis.
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Our software improves upon BWA, GATK, Mutect, and Mutect2 based pipelines.
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The Sentieon tools are deployable on any CPU-based computing system.
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Please set the path to the sentieon license server with:
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export SENTIEON_LICENSE=[FQDN]:[PORT]
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Note: A manual download is required.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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http://spack.readthedocs.io/en/latest/mirrors.html"""
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homepage = "https://www.sentieon.com/"
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url = "file://{0}/sentieon-genomics-201808.01.tar.gz".format(os.getcwd())
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manual_download = True
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version('201808.07', sha256='fb66b18a7b99e44968eb2c3a6a5b761d6b1e70fba9f7dfc4e5db3a74ab3d3dd9')
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version('201808.01', sha256='6d77bcd5a35539549b28eccae07b19a3b353d027720536e68f46dcf4b980d5f7')
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# Licensing.
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license_require = True
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license_vars = ['SENTIEON_LICENSE']
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def install(self, spec, prefix):
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install_tree('bin', prefix.bin)
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install_tree('doc', prefix.doc)
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install_tree('etc', prefix.etc)
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install_tree('lib', prefix.lib)
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install_tree('libexec', prefix.libexec)
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install_tree('share', prefix.share)
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