46 lines
1.7 KiB
Python
46 lines
1.7 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Paml(MakefilePackage):
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"""PAML is a package of programs for phylogenetic analyses of DNA or
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protein sewuences using maximum likelihood."""
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homepage = "http://abacus.gene.ucl.ac.uk/software/paml.html"
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url = "https://github.com/abacus-gene/paml/archive/refs/tags/v4.10.0.tar.gz"
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git = "https://github.com/abacus-gene/paml.git"
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maintainers("snehring")
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version(
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"4.10.3",
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sha256="9b2a6e187e3f9f3bc55cd82db15eb701d43f031167d283a7c1b11c882b5d8a42",
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url="https://github.com/abacus-gene/paml/archive/refs/tags/untagged-a5659203e8ec0ddb58b8.tar.gz",
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)
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version("4.10.0", sha256="6ef6a116f254185eb1cf7a2b975946fc9179a4b7dcb60a82f8fa8bbe6931897c")
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version(
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"4.9h",
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sha256="623bf6cf4a018a4e7b4dbba189c41d6c0c25fdca3a0ae24703b82965c772edb3",
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url="http://abacus.gene.ucl.ac.uk/software/SoftOld/paml4.9h.tgz",
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)
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build_directory = "src"
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir(self.build_directory):
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install("baseml", prefix.bin)
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install("basemlg", prefix.bin)
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install("chi2", prefix.bin)
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install("codeml", prefix.bin)
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install("evolver", prefix.bin)
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install("infinitesites", prefix.bin)
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install("mcmctree", prefix.bin)
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install("pamp", prefix.bin)
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install("yn00", prefix.bin)
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install_tree("dat", prefix.dat)
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install_tree("Technical", prefix.Technical)
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