43 lines
1.8 KiB
Python
43 lines
1.8 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyMikado(PythonPackage):
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"""Mikado is a lightweight Python3 pipeline whose purpose is to facilitate
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the identification of expressed loci from RNA-Seq data * and to select
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the best models in each locus."""
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homepage = "https://github.com/EI-CoreBioinformatics/mikado"
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pypi = "Mikado/Mikado-1.2.4.tar.gz"
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version("1.2.4", sha256="c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61")
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depends_on("c", type="build") # generated
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depends_on("py-setuptools", type="build")
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depends_on("py-wheel@0.28.0:", type="build")
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depends_on("py-pyyaml", type=("build", "run"))
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depends_on("py-jsonschema", type=("build", "run"))
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depends_on("py-cython@0.25:", type="build")
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depends_on("py-numpy", type=("build", "run"))
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depends_on("py-networkx@1.10:", type=("build", "run"))
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depends_on("py-sqlalchemy@1:", type=("build", "run"))
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depends_on("py-sqlalchemy-utils", type=("build", "run"))
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depends_on("py-biopython@1.66:", type=("build", "run"))
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depends_on("py-intervaltree", type=("build", "run"))
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depends_on("py-nose", type=("build", "run"))
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depends_on("py-pyfaidx", type=("build", "run"))
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depends_on("py-scikit-learn@0.17.0:", type=("build", "run"))
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depends_on("py-scipy@0.15.0:", type=("build", "run"))
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depends_on("py-python-magic", type=("build", "run"))
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depends_on("py-drmaa", type=("build", "run"))
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depends_on("snakemake", type=("build", "run"))
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depends_on("py-docutils@:0.13.0,0.13.2:", type=("build", "run"))
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depends_on("py-tabulate", type=("build", "run"))
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depends_on("py-ujson", type=("build", "run"))
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depends_on("py-simplejson", type=("build", "run"))
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depends_on("python@3.4:", type=("build", "run"))
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