Aaron Fisher 639d9c305a Updated the rc tag and version. (#5761)		2017-10-16 11:26:26 -07:00
..
abinit
abyss
ack	Ack: add version 2.18 (#5445)	2017-09-22 19:30:12 -07:00
activeharmony
adept-utils
adios	adios: fixed conditional dependencies on libevpath and dataspaces (#5392)	2017-09-19 14:13:26 +02:00
adios2
adlbx
adol-c
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg2013
ampliconnoise
amr-exp-parabolic
amrex	fixing tag name for development branch (#5496)	2017-09-28 18:12:02 -07:00
andi
angsd
ant
antlr
ape
apex
applewmproto
appres
apr
apr-util
archer
argtable
armadillo	armadillo: use libs to provide arpack and superlu libraries (#5777)	2017-10-16 12:57:01 +02:00
arpack-ng
asciidoc
aspa
aspell	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-de	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-en	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-es	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
assimp	add assimp package. link against it in dealii (#5463)	2017-09-25 06:58:13 -06:00
astra
astral
astyle	astyle: homepage dead, use mirror (#5483)	2017-09-26 13:03:34 -06:00
atk
atlas	blas_lapack: add multithreading variant consistent in all implementations. (#5340)	2017-09-23 13:27:42 -07:00
atompaw
atop
augustus	augustus: url fix (#5311)	2017-09-16 10:20:42 +02:00
autoconf	autoconf, automake: Add missing perl dependency (#5187)	2017-09-26 08:10:22 -06:00
autodock-vina	Autodock vina: spec (#5333)	2017-09-26 14:44:21 -06:00
autogen
automaded
automake	autoconf, automake: Add missing perl dependency (#5187)	2017-09-26 08:10:22 -06:00
bamtools
bamutil
bash
bash-completion
bats
bazel
bbcp
bbmap	bbmap: new package (#5396)	2017-09-20 14:41:25 -07:00
bcftools	samtools: add version 1.6 + some fixes (#5715)	2017-10-12 10:08:31 -06:00
bcl2fastq2
bdftopcf
bdw-gc
bear
beast2
bedtools2
beforelight
benchmark
berkeley-db	berkeley-db: initial commit (#5303)	2017-09-11 13:25:36 -07:00
bertini
bib2xhtml
bigreqsproto
binutils
bioawk	Bioawk: added new package (#5375)	2017-09-16 09:14:57 +02:00
bison	various fixes for macOS high sierra (#5647)	2017-10-12 11:41:57 -07:00
bitmap
blast-plus
blat
blaze
bliss
blitz
bml	Added support for BML+mpi variant (#5563)	2017-10-02 12:51:06 -06:00
boost	boost: remove preferred 1.63 (#5770)	2017-10-14 16:50:28 -06:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
braker
branson	Added spackage for branson (#5520)	2017-09-27 21:50:07 -06:00
brigand
bsseeker2
bucky
busco
butter
bwa
bzip2	dealii: explicitly specify bzip2 libs (#5337)	2017-09-11 20:47:05 -07:00
c-blosc
caffe	Missing opencv dependencies (#5285)	2017-09-10 14:38:11 -10:00
cairo
caliper
callpath
cantera
canu
cap3
cares
cask
catch
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell	Add ability to build llvm-openmp-ompt alone, with gnu compilers and use the resulting ompt interface in cbtf-krell and openspeedshop to gather openmp specific performance information. (#5288)	2017-09-26 14:15:37 -06:00
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo
cereal	fix install method of cereal (#5094)	2017-09-21 07:10:51 -06:00
cfitsio
cgal
cgm
cgns	Update recipe for cgns to avoid build warnings/errors: (#5382)	2017-09-20 18:21:14 -06:00
charm
check
chlorop
chombo
cityhash
clamr
cleaveland4
cleverleaf
clfft
clhep
cloc	Provide a new Perl package 'cloc'. (#5525)	2017-09-28 11:30:08 -06:00
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake	CMake: 3.9.4 (#5614)	2017-10-05 08:57:20 -06:00
cmocka
cmor
cnmem
cnpy
cns-nospec
cntk	Cntk: fixed dependency on protobuf fixes #5266 (#5267)	2017-09-16 10:24:40 +02:00
cntk1bitsgd
codar-cheetah
coevp	Added CoEVP Spackage (#5485)	2017-09-27 21:41:34 -06:00
cohmm
coinhsl
comd
compiz
compositeproto
conduit	update for conduit 0.3.0 release (#5421)	2017-09-25 12:25:40 -06:00
constype
converge
coreutils
corset
cosmomc
cosp2
cp2k
cppad
cppcheck
cpprestsdk
cppunit
cppzmq
cram
cryptopp
cscope
csdp
cub
cube
cuda	CUDA 9.0.176 (#5562)	2017-10-02 10:47:32 -06:00
cuda-memtest
cudnn
cufflinks
cups
curl	adding http2 support (#5628)	2017-10-07 09:58:56 -06:00
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dbus
dealii	dealii: minor fixes (#5687)	2017-10-11 15:09:39 -06:00
dejagnu
dia
dialign-tx
direnv
discovar
dlpack	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
dmlc-core	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dtcmp
dyninst
ea-utils
easybuild
ebms
eccodes
ecp-proxy-apps	Add a bundle package for the ECP proxy applications suite (#5689)	2017-10-11 13:39:30 -06:00
editres
eigen
elemental	blas_lapack: add multithreading variant consistent in all implementations. (#5340)	2017-09-23 13:27:42 -07:00
elfutils
elk
elpa
emacs	emacs: add version 25.3 (security update) (#5447)	2017-09-22 16:34:59 -07:00
emboss
encodings
environment-modules	Bootstrap environment-modules	2017-09-08 10:15:06 -07:00
es
esmf	esmf: Fix build (#5607)	2017-10-05 08:58:40 -06:00
espresso	qmcpack: new package (#4907)	2017-10-06 13:51:18 -07:00
etsf-io
everytrace
everytrace-example
evieext
exabayes
exampm	ExaMPM (#5509)	2017-09-27 21:46:32 -06:00
exasp2	ExaSP2 Spackage (#5570)	2017-10-03 16:04:49 -06:00
exmcutils
exodusii
exonerate
expat
expect
extrae
exuberant-ctags
f90cache
falcon
farmhash
fastjar
fastmath	Rm arpack parpack (#5391)	2017-09-20 18:19:04 -06:00
fastphase
fastq-screen	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
fastqc
fastqvalidator	switching downloads to git (#5659)	2017-10-09 17:07:13 -06:00
fastx-toolkit
fenics
ferret
ffmpeg
fftw
fimpute
findutils
fio
fish
fixesproto
flac
flang	Adding flang - a llvm based Fortran compiler (#5459)	2017-10-10 13:52:31 -07:00
flann	flann: fix build for 1.8.1 (#5508)	2017-09-27 14:39:33 -07:00
flash
flecsale
flecsi
flex
flint
fltk
flux
fmt
foam-extend
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
freebayes
freetype
fseq
fsl	fsl: new package (#5605)	2017-10-05 11:57:57 -07:00
fslsfonts
fstobdf
funhpc
gapcloser
gapfiller
gasnet
gaussian
gawk
gblocks
gcc	various fixes for macOS high sierra (#5647)	2017-10-12 11:41:57 -07:00
gccmakedep
gccxml
gconf
gdal
gdb
gdbm
gdk-pixbuf
geant4
gearshifft
gemmlowp
genemark-et
genometools
geos
gettext	gettext: fix prefix (#5749)	2017-10-13 10:52:55 +02:00
gflags
ghostscript
ghostscript-fonts
giflib
git	git + luafilesystem: minor fixes (#5635)	2017-10-06 13:56:14 -06:00
git-lfs	git-lfs: add 2.2.1 and 2.3.0 (#5429)	2017-09-22 16:36:57 -07:00
gl2ps
glew
glib	Missing perl dependencies (#5204)	2017-09-26 07:27:28 -06:00
glm
global
globalarrays
globus-toolkit
glog	Change glog from Autotools to CMakePackage (#5323)	2017-09-10 13:22:47 -10:00
glpk
glproto
gmake
gmap-gsnap
gmime
gmp
gmsh
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go
go-bootstrap
gobject-introspection
googletest	add variant gmock to googletest (#5278)	2017-09-18 19:28:33 -07:00
gource
gperf
gperftools
grackle
gradle
grandr
graphlib
graphmap
graphviz
grib-api
groff
gromacs	gromacs: added 2016.4 (#5376)	2017-09-16 09:12:02 +02:00
gsl	gsl: add 2.4 (#5768)	2017-10-14 16:39:43 -06:00
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guile
h5hut
h5part
h5utils
h5z-zfp
hacckernels	Added hacckernels package (#5533)	2017-09-28 12:46:26 -06:00
hadoop
hapcut2
haploview
harfbuzz
harminv
hdf
hdf5	hdf5: fix macOS build by not using numactl (#5458)	2017-09-23 22:34:00 -06:00
hdf5-blosc
help2man
hepmc
heppdt
highfive
highwayhash
hisat2	hisat2: new package (#5488)	2017-10-02 10:27:06 -07:00
hmmer
hoomd-blue
hpccg
hpctoolkit	Update hpctoolkit and externals to latest release	2017-09-15 12:58:33 -07:00
hpctoolkit-externals	Update hpctoolkit and externals to latest release	2017-09-15 12:58:33 -07:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib	samtools: add version 1.6 + some fixes (#5715)	2017-10-12 10:08:31 -06:00
httpie	Add info for httpie@0.9.9 (#5451)	2017-09-23 00:40:22 +00:00
hub
hunspell
hwloc
hybpiper
hydra
hypre	hypre: add 2.12.1 (#5653)	2017-10-08 07:27:25 -06:00
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
igraph
ilmbase
image-magick
imake
impute2
infernal
inputproto
intel	added Intel 2018 tools (#5404)	2017-09-20 18:15:20 -06:00
intel-daal	add Intel 2018 libraries (#5354)	2017-09-16 10:10:08 +02:00
intel-gpu-tools
intel-ipp	add Intel 2018 libraries (#5354)	2017-09-16 10:10:08 +02:00
intel-mkl	qmcpack: new package (#4907)	2017-10-06 13:51:18 -07:00
intel-mpi	add Intel 2018 libraries (#5354)	2017-09-16 10:10:08 +02:00
intel-parallel-studio	blas_lapack: add multithreading variant consistent in all implementations. (#5340)	2017-09-23 13:27:42 -07:00
intel-tbb	intel-tbb: add 2018.1 (#5769)	2017-10-14 16:40:23 -06:00
intltool
ior	Chnage IOR to AutotoolsPackage; remove hard-coded mpicc path (#5318)	2017-09-10 13:17:54 -10:00
iozone
ipopt
isaac
isaac-server
isl
itstool
itsx
jags
jansson
jasper
jdk
jemalloc
jmol
jq
json-c
jsoncpp
judy
julia
kahip
kaks-calculator	kaks-calculator: new package (#5725)	2017-10-12 12:47:11 -06:00
kaldi
kallisto
kbproto
kdiff3
kealib
kentutils
kmergenie
kokkos
krims	Add krims and lazyten (#5771)	2017-10-15 11:45:11 -06:00
kripke
lammps	lammps: add user-omp package (#5486)	2017-09-27 12:46:58 -07:00
last
latte	latte: add v1.0.1 (#5403)	2017-09-20 19:02:45 -07:00
launchmon
lazyten	Add krims and lazyten (#5771)	2017-10-15 11:45:11 -06:00
lbann	Lbann flags (#5747)	2017-10-12 20:23:38 -06:00
lbxproxy
lcals
lcms
ldc	Added 'ldc' compiler for D language based on LLVM (#5279)	2017-09-11 21:54:38 +02:00
ldc-bootstrap	Added 'ldc' compiler for D language based on LLVM (#5279)	2017-09-11 21:54:38 +02:00
legion
leveldb
lftp	Add info for lftp@4.8.1 (#5452)	2017-09-23 00:39:49 +00:00
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbsd
libbson	libbson, libmongoc: Update to 1.8.0 (#5478)	2017-09-27 10:19:10 -06:00
libcanberra
libcap
libcerf
libcircle
libconfig
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libevent
libevpath
libfabric
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgit2
libgpg-error
libgpuarray	Libgpuarray requires CMake 3.0 or higher (#5326)	2017-09-10 10:06:13 +02:00
libgtextutils
libharu
libhio
libice
libiconv
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
libmatheval
libmesh
libmng
libmongoc	libbson, libmongoc: Update to 1.8.0 (#5478)	2017-09-27 10:19:10 -06:00
libmonitor
libnbc
libogg
liboldx
libpcap	Initial version of libpcap (#5710)	2017-10-12 07:00:21 -06:00
libpciaccess
libpfm4
libpipeline
libpng	libpng: zlib flags more elegant (#5656)	2017-10-09 21:46:10 +02:00
libpsl	Add test deptype (#5132)	2017-09-29 22:08:15 -07:00
libpthread-stubs
libquo
libsigsegv
libsm
libsodium	libsodium: update URLs (#5355)	2017-09-14 08:16:54 -05:00
libspatialindex
libsplash
libssh2
libsvm
libszip
libtermkey
libtiff
libtool
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11	Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)	2017-10-05 16:53:12 -06:00
libxau	Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)	2017-10-05 16:53:12 -06:00
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender	Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)	2017-10-05 16:53:12 -06:00
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid	likwid: update versions (#5757)	2017-10-13 16:08:49 -06:00
linkphase3	linkphase3: new package (#5493)	2017-10-02 12:36:39 -06:00
linux-headers
listres
llvm	Update llvm to version 5.0.0 (#5773)	2017-10-15 13:04:40 -06:00
llvm-lld
llvm-openmp-ompt	Add ability to build llvm-openmp-ompt alone, with gnu compilers and use the resulting ompt interface in cbtf-krell and openspeedshop to gather openmp specific performance information. (#5288)	2017-09-26 14:15:37 -06:00
lmdb
lmod	Add info for lmod@7.7 and lmod@7.6.14 (#5450)	2017-09-25 07:31:43 -06:00
lndir
log4cxx
lrslib
lrzip
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem	git + luafilesystem: minor fixes (#5635)	2017-10-06 13:56:14 -06:00
lua-luaposix
lua-mpack
luit
lulesh
lwgrp
lwm2
lz4
lzma
lzo
m4	Revert "Use cflags instead of the args variable (#5756)" (#5765)	2017-10-14 13:55:02 +02:00
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
mariadb	orthomcl: new package (#5345)	2017-09-20 15:12:52 -07:00
masa	Masa requires python if +python. (#5547)	2017-09-29 16:14:12 -06:00
matio
matlab
maven	maven: new version (#5631)	2017-10-06 13:53:56 -06:00
maverick
mawk
mbedtls
mcl
mdtest
meep
memaxes
meme
mercurial
mesa	mesa: merge multiple branches into one (#5170)	2017-09-18 11:10:54 -07:00
mesa-glu
meshkit
meson
mesquite
metaphysicl	Add metaphysicl package (#5539)	2017-09-28 18:02:07 -07:00
metis
mfem	Updated the rc tag and version. (#5761)	2017-10-16 11:26:26 -07:00
microbiomeutil
miniaero
miniamr	Add a bundle package for the ECP proxy applications suite (#5689)	2017-10-11 13:39:30 -06:00
miniconda2
miniconda3
minife
minighost
minigmg
minimap2	minimap2: new package (#5722)	2017-10-12 10:07:42 -06:00
minimd
minismac2d
minixyce
mirdeep	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab
molcas
mono	Add info for mono@5.4.0.167 (#5405)	2017-09-20 18:44:53 -06:00
mosh	New version for mosh1.3.2 (#5448)	2017-09-24 15:12:35 -06:00
mothur
mozjs
mpc
mpe2
mpest
mpfr	Tell configure about gmp (#5585)	2017-10-03 14:40:14 -06:00
mpibash
mpiblast
mpich	Additional MPICH configs (#5259)	2017-09-27 10:50:05 -07:00
mpifileutils
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3	mrtrix3: new package (#5568)	2017-10-02 15:56:15 -06:00
msgpack-c
mshadow	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
multitail	Add package for multitail@6.4.2 (#5567)	2017-10-03 16:05:19 -06:00
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2
mxml
mxnet	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
nag
nalu	Adding openfast variant to nalu. (#5675)	2017-10-09 20:10:47 -06:00
namd
nano
nanoflann
nasm
nauty	Patches are hashed with specs, and can be associated with dependencies.	2017-09-30 02:06:59 -07:00
nccl
nccmp
ncdu
ncftp
ncl	ncl: Fix temp directory and depend on esmf (#5636)	2017-10-06 13:53:05 -06:00
nco
ncurses
ncview
ndiff
nekbone
neovim
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack
netlib-scalapack
nettle
nextflow
nfft
nghttp2	Nghttp2 new package (#5627)	2017-10-06 13:59:56 -06:00
nginx
ngmlr
ninja	ninja: add v1.8.2 (#5625)	2017-10-10 12:50:56 -07:00
ninja-fortran
nmap
nnvm	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
node-js	Fix node-js : requires openssl min 1.0.2 (#5650)	2017-10-08 17:04:09 -06:00
notmuch
npb
npm
npth
nspr
numactl	New Pcakage: numactl (#5371)	2017-09-16 13:00:32 -07:00
numdiff
nut
nwchem	Patches are hashed with specs, and can be associated with dependencies.	2017-09-30 02:06:59 -07:00
ocaml
oce	oce: add 0.18.2 (#5767)	2017-10-14 16:39:21 -06:00
oclock
octave
octave-splines
octopus
of-adios-write
ompss
ompt-openmp
oniguruma
ont-albacore
opari2
openbabel
openblas	openblas: remove extra develop version (#5750)	2017-10-13 12:10:05 +02:00
opencoarrays
opencv	Opencv: fix dependencies and variants (#5232)	2017-09-20 21:37:52 -07:00
openexr
openfast	Add OpenFAST package (wind turbine simulation tool). (#5662)	2017-10-12 11:42:51 -07:00
openfoam-com	Restrict openfoam to using openmpi+thread_multiple (partially resolves #5428) (#5479)	2017-09-28 14:42:14 -06:00
openfoam-org
openfst
openjpeg
openmc
openmpi	OpenMPI: add 2.1.2 bug fix release (#5418)	2017-09-21 13:26:23 -07:00
openscenegraph
openspeedshop
openssh
openssl	OpenSSL: Fix Zlib (#5584)	2017-10-04 10:25:11 -06:00
opium
opus
orfm
orthomcl	orthomcl: new package (#5345)	2017-09-20 15:12:52 -07:00
osu-micro-benchmarks
otf
otf2
p4est
p7zip	added p7zip package (#5394)	2017-09-19 22:51:32 +02:00
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pango
papi
paradiseo
parallel
parallel-netcdf
paraver
paraview	- build paraview without qt when osmesa is specified. (#5480)	2017-09-27 22:32:10 -06:00
parmetis
parmgridgen
parsimonator
parsplice	parsplice: add version 1.1 (#5461)	2017-09-23 20:28:40 -07:00
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbmpi
pcma
pcre	Update git to @2.14.1, requires pcre+jit variant (#5430)	2017-09-22 16:43:45 -07:00
pcre2
pdsh
pdt	Improve PDToolkit support for different compilers (#5322)	2017-09-10 13:16:49 -10:00
pegtl
pennant
perl
perl-capture-tiny	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-dbfile
perl-dbi
perl-devel-cycle	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-extutils-makemaker
perl-extutils-pkgconfig	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-font-ttf	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-gd	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-gd-graph	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-gd-text	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-intervaltree
perl-math-cdf
perl-module-build
perl-padwalker	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-pdf-api2	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-star-fusion
perl-sub-uplevel	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-term-readkey
perl-test-exception	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-test-memory-cycle	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-uri-escape
perl-xml-parser
petsc	petsc: a temporary workaround for concretizer bug in all packages which depend on SLEPc (#5755)	2017-10-16 00:53:55 -07:00
pexsi
pfft
pflotran
pgdspider
pgi
phasta
phylip
picard
pidx
pigz
piranha
pixman
pkg-config
pkgconf
planck-likelihood
plasma	Add PLASMA package (#5540)	2017-10-08 17:59:41 -06:00
plink
plumed	plumed: reworked patching applications, added new version (#5680)	2017-10-10 12:35:53 -07:00
pmgr-collective
pmix	PMIx: add PMIx package to Spack (#5426)	2017-09-22 11:27:28 -06:00
pnfft
pngwriter
poamsa
pocl
polymake
porta
portage	portage: fixes + added v1.1.* (#5706)	2017-10-16 09:59:41 -07:00
postgresql
ppl
prank
presentproto
preseq
price
primer3
printproto
probconsrna
proj
protobuf	Fix Protobuf URLs (#5373)	2017-09-25 10:47:55 -07:00
proxymngr
pruners-ninja
ps-lite	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
psi4
pstreams
pugixml
pumi
pvm
py-3to2
py-4suite-xml
py-abipy
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs
py-autopep8
py-babel
py-backports-abc
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-brian
py-brian2
py-bsddb3	Feature/methycode (#5374)	2017-09-16 12:58:04 -07:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-click
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-cryptography
py-csvkit	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-current
py-cutadapt
py-cycler
py-cython
py-dask
py-dateutil	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-dbf	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-decorator
py-deeptools
py-dev
py-dill
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso	py-espresso: initial commit (#5724)	2017-10-13 12:29:30 -07:00
py-espressopp	espressopp -> py-espressopp (#5732)	2017-10-13 12:28:36 -07:00
py-et-xmlfile
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear
py-flake8	patch py-mccabe and py-flake8 to not require pytest-runner for install (#5427)	2017-09-25 12:46:47 -07:00
py-flask
py-flexx
py-funcsigs
py-functools32
py-future
py-futures
py-genders
py-genshi
py-git2
py-git-review
py-gnuplot
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-httpbin
py-hypothesis
py-idna
py-igraph
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-latexcodec
py-lazy
py-lazyarray
py-libconf
py-line-profiler	add package py-line-profiler (#5291)	2017-09-10 14:35:17 -10:00
py-lit
py-lmfit
py-lockfile
py-logilab-common
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-mako
py-mappy	minimap2: new package (#5722)	2017-10-12 10:07:42 -06:00
py-markdown
py-markupsafe
py-matplotlib	Fix matplotlib build issue with intel compiler (#5321)	2017-09-10 13:15:12 -10:00
py-mccabe	patch py-mccabe and py-flake8 to not require pytest-runner for install (#5427)	2017-09-25 12:46:47 -07:00
py-mdanalysis
py-meep
py-memory-profiler	Add package py-memory-profiler (#5413)	2017-09-21 20:00:09 -06:00
py-methylcode	Feature/methycode (#5374)	2017-09-16 12:58:04 -07:00
py-misopy
py-mistune
py-mock
py-mongo
py-monotonic
py-monty
py-mpi4py
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
py-myhdl
py-mysqldb1
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numexpr
py-numpy
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpyxl	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-ordereddict
py-oset
py-packaging
py-palettable
py-pandas
py-paramiko
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-ply
py-pmw
py-pox
py-ppft
py-prettytable
py-proj
py-prompt-toolkit
py-protobuf
py-psutil
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyasn1
py-pybigwig
py-pybind11	add new version to package py-pybind11	2017-09-15 10:13:47 -07:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyfasta	Feature/methycode (#5374)	2017-09-16 12:58:04 -07:00
py-pyfftw
py-pyflakes
py-pygments
py-pygobject
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pympler
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyside
py-pysocks
py-pytables
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-gitlab
py-pythonqwt
py-pytz
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities	pr-quantities: add version & py-numpy conflict (#5307)	2017-09-19 13:10:13 -07:00
py-radical-utils
py-ranger
py-readme-renderer
py-regex
py-requests
py-restview
py-rope
py-rpy2
py-rsa
py-rtree
py-saga-python
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy
py-seaborn
py-setuptools
py-sh
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-sncosmo
py-snowballstemmer
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-theano
py-tifffile
py-tomopy
py-tornado
py-tqdm
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xlrd
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yapf
py-yt
py-zmq
python	Update pic/shared variants for hdf5, python, silo (#5423)	2017-09-21 18:14:31 -07:00
qbank
qbox
qhull
qmcpack	qmcpack: new package (#4907)	2017-10-06 13:51:18 -07:00
qmd-progress	qmd-progress: add shared variant (#5381)	2017-09-18 15:36:42 -07:00
qrupdate
qt
qt-creator	added qt creator version 4.4.0 (#5518)	2017-09-27 21:49:33 -06:00
qtgraph
qthreads
quinoa
qwt
r
r-a4	r-a4: new package. (#5577)	2017-10-03 16:03:57 -06:00
r-a4base	r-a4base: new package. (#5576)	2017-10-03 16:04:18 -06:00
r-a4classif	r-a4classif: new package. (#5557)	2017-09-29 16:06:27 -06:00
r-a4core	r-a4core: new package. (#5512)	2017-09-27 21:47:12 -06:00
r-a4preproc	r-a4preproc: Create new package. (#5499)	2017-09-29 15:27:20 -06:00
r-a4reporting	r-a4reporting: new package. (#5575)	2017-10-02 15:54:44 -06:00
r-abadata	r-abadata: new package. (#5611)	2017-10-05 08:58:04 -06:00
r-abaenrichment	r-abaenrichment: Create new package. (#5612)	2017-10-05 08:57:42 -06:00
r-abind
r-absseq	r-absseq: Create new package. (#5617)	2017-10-05 10:21:33 -06:00
r-acde	r-acde: Create new package. (#5616)	2017-10-05 10:21:17 -06:00
r-acgh	r-acgh: Create new package. (#5619)	2017-10-05 10:22:03 -06:00
r-acme	r-acme: Create new package. (#5620)	2017-10-05 10:22:24 -06:00
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit	r-adsplit: Create new package and update version for its dependencies. (#5640)	2017-10-09 17:10:29 -06:00
r-affxparser	r-affxparser: Create new package. (#5641)	2017-10-06 20:13:38 -06:00
r-affy	r-affy: added versioned dependency on r (#5660)	2017-10-11 19:49:48 -06:00
r-affycomp	r-affycomp: Create new package. (#5642)	2017-10-06 20:13:57 -06:00
r-affycompatible	r-affycompatible: Create new package. (#5664)	2017-10-09 17:05:53 -06:00
r-affycontam	r-affycontam: Create new package. (#5668)	2017-10-09 17:04:51 -06:00
r-affydata	r-affydata: Create new package. (#5665)	2017-10-09 17:05:21 -06:00
r-affyio	r-affyio: added versioned dependency on r (#5661)	2017-10-11 19:49:28 -06:00
r-annaffy	r-annaffy: new package. (#5414)	2017-09-28 12:49:31 -06:00
r-annotate	r-annotate: new package. (#5490)	2017-09-26 15:39:34 -06:00
r-annotationdbi	r-annotationdbi: new package (#5408)	2017-09-25 16:37:31 -06:00
r-ape
r-assertthat	r-assertthat: update version to 0.2.0 (#5435)	2017-09-23 14:58:53 +00:00
r-base64enc
r-bh	r-bh: update version. (#5442)	2017-09-23 15:01:35 +00:00
r-biobase	r-biobase: new package (#5398)	2017-09-20 19:00:56 -07:00
r-biocgenerics	r-biocgenerics: added version 0.22.1 and added versioned dependency on r (#5683)	2017-10-11 19:48:19 -06:00
r-biocinstaller	r-biocinstaller: added versioned dependency on r (#5663)	2017-10-11 19:49:08 -06:00
r-biocparallel	r-biocparallel: created new package (#5703)	2017-10-11 19:42:25 -06:00
r-biomart	r-biomart: added versioned dependency on r (#5666)	2017-10-11 19:41:08 -06:00
r-biostrings	r-biostrings: added versioned dependency on r (#5667)	2017-10-13 07:51:30 -06:00
r-bit	r-bit: new package. (#5436)	2017-09-23 14:59:09 +00:00
r-bit64	r-bit64: new package. (#5437)	2017-09-25 16:38:18 -06:00
r-bitops
r-blob	r-blob: new package. (#5438)	2017-09-25 14:41:18 -06:00
r-boot	r-boot: Update version to 1.3-20 (#5615)	2017-10-05 10:20:45 -06:00
r-brew
r-c50
r-car
r-caret
r-catools
r-checkpoint
r-chron
r-class
r-cluster	r-cluster: Update version to 2.0.6. (#5618)	2017-10-05 10:21:44 -06:00
r-coda
r-codetools
r-coin
r-colorspace
r-corpcor
r-corrplot
r-crayon
r-cubature
r-cubist
r-curl
r-data-table
r-dbi	r-dbi: updated to version 0.7 (#5537)	2017-09-28 22:14:56 -06:00
r-delayedarray	r-delayedarray: created new package (#5704)	2017-10-11 19:42:04 -06:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-devtools
r-diagrammer
r-dichromat
r-digest
r-diptest
r-domc
r-doparallel
r-dorng	r-dorng: created new package (#5740)	2017-10-13 07:47:01 -06:00
r-downloader	r-downloader: created new package (#5556)	2017-09-29 16:05:30 -06:00
r-dplyr	r-dplyr: Update version to 0.7.3 (#5531)	2017-09-28 13:09:30 -06:00
r-dt
r-dygraphs
r-e1071
r-edger	r-edger: added versioned dependency on r (#5669)	2017-10-13 18:32:43 -06:00
r-ellipse
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-filehash
r-flashclust
r-flexmix
r-foreach
r-foreign
r-formatr
r-formula
r-fpc
r-futile-logger	r-futile-logger: created new package (#5701)	2017-10-11 19:43:15 -06:00
r-futile-options	r-futile-options: created new package (#5699)	2017-10-11 19:43:53 -06:00
r-gbm	r-gbm: new package. (#5548)	2017-09-29 15:29:11 -06:00
r-gcrma	r-gcrma: added versioned dependency on r (#5670)	2017-10-12 16:18:30 -06:00
r-gdata	r-gdata: Update version to 2.18.0 (#5495)	2017-09-28 18:13:06 -07:00
r-genefilter	r-genefilter: New package. (#5467)	2017-09-25 16:57:17 -06:00
r-genomeinfodb	r-genomeinfodb: created new package (#5695)	2017-10-11 19:47:03 -06:00
r-genomeinfodbdata	r-genomeinfodbdata: added versioned dependency on r (#5685)	2017-10-11 19:48:00 -06:00
r-genomicranges	r-genomicranges: added new package (#5697)	2017-10-11 19:45:03 -06:00
r-geosphere
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggsci
r-ggvis	r-ggvis: Update version to 0.4.3 (#5532)	2017-09-28 13:13:47 -06:00
r-gistr
r-git2r
r-glmnet	r-glmnet: update version. (#5470)	2017-09-25 16:39:41 -06:00
r-gmodels
r-gmp
r-go-db	r-annaffy: new package. (#5414)	2017-09-28 12:49:31 -06:00
r-googlevis
r-gplots	r-gplots: Create New Package. (#5494)	2017-09-27 10:20:17 -06:00
r-gridbase
r-gridextra
r-gtable
r-gtools
r-hexbin
r-highr
r-hms	r-hms: created new package (#5638)	2017-10-06 20:12:59 -06:00
r-htmltools	r-htmltools: Update version to 0.3.6 (#5528)	2017-09-28 11:31:16 -06:00
r-htmlwidgets	r-htmlwidgets: Update version to 0.8. (#5551)	2017-09-29 14:28:48 -07:00
r-httpuv	r-httpuv: Update version to 1.3.5 (#5527)	2017-09-28 11:30:57 -06:00
r-httr
r-hwriter	r-hwriter: new package. (#5549)	2017-09-29 15:29:26 -06:00
r-igraph
r-influencer
r-inline
r-ipred
r-iranges	r-annotationdbi: new package (#5408)	2017-09-25 16:37:31 -06:00
r-irdisplay
r-irkernel
r-irlba
r-iterators
r-jpeg
r-jsonlite	r-jsonlite: Update version to 1.5 (#5524)	2017-09-28 11:28:49 -06:00
r-kegg-db	r-annaffy: new package. (#5414)	2017-09-28 12:49:31 -06:00
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r	r-lambda-r: created new package (#5700)	2017-10-11 19:43:33 -06:00
r-laplacesdemon
r-lattice	r-glmnet: update version. (#5470)	2017-09-25 16:39:41 -06:00
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-limma	r-limma: added version 3.32.7 (#5558)	2017-09-29 16:29:41 -06:00
r-lme4
r-lmtest
r-locfit	r-locfit: created new package (#5572)	2017-10-02 15:54:26 -06:00
r-lpsolve
r-lubridate
r-magic
r-magrittr
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matrix	r-glmnet: update version. (#5470)	2017-09-25 16:39:41 -06:00
r-matrixmodels
r-matrixstats	r-matrixstats: created new package (#5682)	2017-10-11 19:48:39 -06:00
r-mclust
r-mda
r-memoise	r-memoise: update version. (#5440)	2017-09-23 15:00:50 +00:00
r-mgcv
r-mime
r-minqa
r-mlbench
r-mlinterfaces	r-mlinterfaces: new package. (#5555)	2017-09-29 15:34:44 -06:00
r-modelmetrics
r-modeltools
r-mpm	r-mpm: new package. (#5416)	2017-09-21 13:36:51 -07:00
r-multcomp
r-multtest	r-multtest: new package. (#5469)	2017-09-25 16:45:21 -06:00
r-munsell
r-mvtnorm
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-np
r-numderiv
r-openssl
r-packrat
r-pacman
r-pamr	r-pamr: new package (#5514)	2017-09-27 21:48:04 -06:00
r-party
r-partykit
r-pbdzmq
r-pbkrtest
r-permute
r-pkgconfig	r-pkgconfig: new package. (#5441)	2017-09-25 16:38:45 -06:00
r-pkgmaker
r-plogr	r-plogr: new package. (#5443)	2017-09-25 16:42:03 -06:00
r-plotrix
r-pls
r-plyr
r-png
r-prabclus
r-praise
r-preprocesscore	r-preprocesscore: added versioned dependency on r (#5671)	2017-10-13 18:50:26 -06:00
r-prodlim
r-proto
r-pryr
r-quadprog
r-quantmod
r-quantreg
r-r6	r-r6: Update version to 2.2.2 (#5529)	2017-09-28 12:46:11 -06:00
r-randomforest
r-raster
r-rbokeh
r-rcolorbrewer
r-rcpp	r-rcpp: Update version to 0.12.13 (#5526)	2017-09-28 11:30:25 -06:00
r-rcppeigen
r-rcurl	r-rcurl: created new package (#5492)	2017-09-26 17:49:54 -06:00
r-rda	r-rda: new package. (#5523)	2017-09-28 11:28:29 -06:00
r-readr	r-readr: created new package (#5741)	2017-10-13 07:47:43 -06:00
r-registry
r-repr
r-reshape2
r-rgl
r-rgooglemaps
r-rinside
r-rjava
r-rjson
r-rjsonio
r-rlang	r-adsplit: Create new package and update version for its dependencies. (#5640)	2017-10-09 17:10:29 -06:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi	r-rmpi: added list_url and updated md5 (#5698)	2017-10-13 18:35:06 -06:00
r-rmysql
r-rngtools
r-robustbase
r-rocr	r-rocr: new package. (#5513)	2017-09-27 21:47:47 -06:00
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rsamtools	r-rsamtools: created new package (#5702)	2017-10-11 19:42:55 -06:00
r-rsnns
r-rsqlite	r-rsqlite: Update version to 2.0. (#5444)	2017-09-23 15:02:27 +00:00
r-rstan
r-rstudioapi
r-rzmq
r-s4vectors	r-s4vectors: added versioned dependency on r (#5672)	2017-10-13 18:32:17 -06:00
r-sandwich
r-scales
r-scatterplot3d
r-segmented
r-seqinr
r-sfsmisc	r-sfsmisc: new package. (#5516)	2017-09-27 22:16:02 -06:00
r-shiny	r-shiny: update version to 1.0.5 (#5530)	2017-09-28 11:31:27 -06:00
r-simpleaffy	r-simpleaffy: added versioned dependency on r (#5673)	2017-10-12 16:18:15 -06:00
r-snow
r-sp
r-sparsem
r-spdep
r-stanheaders
r-statnet-common
r-stringi	r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737)	2017-10-13 07:45:26 -06:00
r-stringr	r-stringr: added list_url and version 1.2.0 (#5738)	2017-10-13 07:46:29 -06:00
r-strucchange
r-summarizedexperiment	r-summarizedexperiment: created new package (#5734)	2017-10-13 07:45:05 -06:00
r-survey
r-survival	r-survival: updated to version 2.41-3 (#5409)	2017-09-20 18:42:16 -06:00
r-tarifx
r-testit
r-testthat
r-th-data
r-threejs	r-threejs: Correct url. (#5553)	2017-09-29 15:33:05 -06:00
r-tibble	r-tibble: added dependency r-rlang (#5536)	2017-10-04 09:59:40 -07:00
r-tidyr
r-trimcluster
r-trust
r-ttr
r-uuid
r-varselrf	r-varselrf: new package. (#5515)	2017-09-27 21:48:22 -06:00
r-vcd
r-vegan
r-viridis
r-viridislite
r-visnetwork
r-whisker
r-withr
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xml	r-xml: updated url and added version 3.98-1.9 (#5466)	2017-09-25 16:46:01 -06:00
r-xtable
r-xts
r-xvector	r-xvector: added versioned dependency on r (#5731)	2017-10-13 16:01:18 -06:00
r-yaml	r-yaml: Correct url (#5550)	2017-09-29 16:05:55 -06:00
r-yaqcaffy	r-yaqcaffy: added list_url and versioned dependency on r (#5730)	2017-10-13 07:44:26 -06:00
r-zlibbioc	r-zlibbioc: added versioned dependency on r (#5674)	2017-10-13 07:50:10 -06:00
r-zoo
raft
raja
randfold	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
random123
randrproto
ravel
raxml
ray
rdp-classifier
readline
recordproto
redundans
relion
rempi
rename
rendercheck
renderproto
resourceproto
revbayes
rgb
rhash
rockstar
root
rose
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
rust
rust-bindgen
sabre
salmon
sambamba	[WIP]: Sambamba new package (#5304)	2017-09-20 18:23:49 -06:00
samrai
samtools	samtools: add version 1.6 + some fixes (#5715)	2017-10-12 10:08:31 -06:00
sandbox	Add the Sandbox package (#5595)	2017-10-04 18:40:03 -07:00
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scons
scorec-core
scorep	Improve scorep package with different compilers and mpi providers (#5386)	2017-09-18 13:35:42 -07:00
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info	Missing perl dependencies (#5204)	2017-09-26 07:27:28 -06:00
shiny-server
shortstack
showfont
sickle
signalp
silo	Update pic/shared variants for hdf5, python, silo (#5423)	2017-09-21 18:14:31 -07:00
simplemoc
simul
simulationio
singularity
slepc	slepc: refine version constraints for petsc 3.8 (#5752)	2017-10-13 07:11:17 -06:00
slurm
smalt
smc
smproxy
snakemake
snap
snap-berkeley
snap-korf	snap-korf: new package (#5589)	2017-10-10 11:09:31 -07:00
snappy	snappy: Build shared library by default (#5534)	2017-09-28 14:18:50 -06:00
snbone
sniffles
snptest
soap2
soapindel
soapsnp
somatic-sniper
sortmerna
sowing
sox
spades
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
sph2pipe
spherepack
spindle
spot
sqlite
squid	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
sra-toolkit	sra-toolkit: new package (#5588)	2017-10-03 14:41:41 -06:00
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
stat
stc
stream
strelka	Strelka depends on boost 1.56.0 *or newer* (#5690)	2017-10-11 17:21:26 -06:00
stress
stringtie
structure
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials	Update Sundials package (#5696)	2017-10-13 21:13:10 -06:00
superlu
superlu-dist	superlu_dist: update to latest version 5.2.1 (#5762)	2017-10-13 21:22:44 -06:00
superlu-mt
swarm
swiftsim
swig
symengine
sympol
sz	SZ: add version 1.4.11 (#5517)	2017-09-27 16:30:43 -07:00
tabix
talloc
tar
targetp	targetp: new package (#5334)	2017-09-19 13:58:07 -07:00
task
taskd
tassel	tassel: new package (#5583)	2017-10-04 10:28:28 -06:00
tau
tcl
tcoffee
tcsh	Patches are hashed with specs, and can be associated with dependencies.	2017-09-30 02:06:59 -07:00
tealeaf
tetgen
tethex
texinfo
texlive	Use trusted/historic site for texlive installer (#5347)	2017-09-21 07:22:09 -06:00
the-platinum-searcher
the-silver-searcher	The silver searcher: new version (#5630)	2017-10-06 13:56:58 -06:00
thrift
tig
tinyxml
tinyxml2
tk
tmalign
tmhmm	tmhmm: new package (#5335)	2017-09-20 14:45:13 -07:00
tmux	tmux: add version 2.5 (#5449)	2017-09-22 19:30:47 -07:00
tmuxinator
tophat
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
triangle
trilinos	flake8: fix warnings (#5759)	2017-10-13 15:16:58 -06:00
trimgalore
trimmomatic
turbine
turbomole
tut	Modulefiles generated with a template engine (#3183)	2017-09-19 12:34:20 -07:00
twm
tycho2	tycho2: initial commit (#5196)	2017-09-28 14:48:54 -07:00
uberftp
udunits2
uncrustify
unibilium
unison
units
unixodbc
usearch
util-linux
util-macros
uuid
valgrind
vampirtrace
vardictjava	Add a package for VarDictJava@1.5.1 (#5626)	2017-10-06 13:58:34 -06:00
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
velvet
videoproto
viennarna	'with_or_without' accepts bool variants	2017-09-11 16:20:49 -07:00
viewres
vim
virtualgl
visit
vizglow
vmatch
voropp
votca-csg	added votca-1.4.1 modules (#5276)	2017-09-11 13:28:53 -07:00
votca-ctp
votca-moo
votca-tools	added votca-1.4.1 modules (#5276)	2017-09-11 13:28:53 -07:00
votca-xtp	added votca-1.4.1 modules (#5276)	2017-09-11 13:28:53 -07:00
vpfft
vpic
vsearch
vtk
wannier90
wget
windowswmproto
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c	xerces-c: Fix url (#5597)	2017-10-04 10:25:31 -06:00
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhost
xineramaproto
xinit
xinput
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench	Add a bundle package for the ECP proxy applications suite (#5689)	2017-10-11 13:39:30 -06:00
xscope
xsdk
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsm
xstdcmap
xterm
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xz
yajl	Added Spackage for YAJL (#5566)	2017-10-02 12:50:55 -06:00
yaml-cpp
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh
zstd