47 lines
2.2 KiB
Python
47 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RAcme(RPackage):
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"""ACME (Algorithms for Calculating Microarray Enrichment) is a set
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of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity,
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or other experiments that result in regions of the genome showing
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"enrichment". It does not rely on a specific array technology
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(although the array should be a "tiling" array), is very general
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(can be applied in experiments resulting in regions of enrichment),
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and is very insensitive to array noise or normalization methods.
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It is also very fast and can be applied on whole-genome tiling array
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experiments quite easily with enough memory."""
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homepage = "https://www.bioconductor.org/packages/ACME/"
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url = "https://git.bioconductor.org/packages/ACME"
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version('2.32.0', git='https://git.bioconductor.org/packages/ACME', commit='76372255d7714a0c8128a11c028bf70214dac407')
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depends_on('r@3.4.0:3.4.9', when='@2.32.0')
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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