51 lines
2.4 KiB
Python
51 lines
2.4 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RDose(RPackage):
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"""Disease Ontology Semantic and Enrichment analysis.
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This package implements five methods proposed by Resnik, Schlicker,
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Jiang, Lin and Wang respectively for measuring semantic similarities
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among DO terms and gene products. Enrichment analyses including
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hypergeometric model and gene set enrichment analysis are also
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implemented for discovering disease associations of high-throughput
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biological data."""
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bioc = "DOSE"
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version("3.24.1", commit="a78995d3b12bd4baabb69c497102687814cd4c68")
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version("3.22.1", commit="6b711a0f076a9fefcb00ddef66e8f198039e6dfa")
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version("3.22.0", commit="242ac1b746c44fbbf281fbe6e5e4424a8dc74375")
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version("3.20.1", commit="bf434f24d035217822cb1b0ab08a486b9a53edb4")
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version("3.16.0", commit="a534a4f2ef1e54e8b92079cf1bbedb5042fd90cd")
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version("3.10.2", commit="5ea51a2e2a04b4f3cc974cecb4537e14efd6a7e3")
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version("3.8.2", commit="4d3d1ca710aa7e4288a412c8d52b054b86a57639")
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version("3.6.1", commit="f2967f0482cea39222bfd15767d0f4a5994f241b")
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version("3.4.0", commit="dabb70de1a0f91d1767601e871f2f1c16d29a612")
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version("3.2.0", commit="71f563fc39d02dfdf65184c94e0890a63b96b86b")
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depends_on("r@3.3.1:", type=("build", "run"))
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depends_on("r@3.4.0:", type=("build", "run"), when="@3.6.1:")
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depends_on("r@3.5.0:", type=("build", "run"), when="@3.16.0:")
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depends_on("r-annotationdbi", type=("build", "run"))
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depends_on("r-hdo-db", type=("build", "run"), when="@3.24.1:")
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depends_on("r-biocparallel", type=("build", "run"))
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depends_on("r-fgsea", type=("build", "run"))
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depends_on("r-ggplot2", type=("build", "run"))
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depends_on("r-gosemsim@2.0.0:", type=("build", "run"))
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depends_on("r-gosemsim@2.23.1:", type=("build", "run"), when="@3.24.1:")
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depends_on("r-qvalue", type=("build", "run"))
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depends_on("r-reshape2", type=("build", "run"))
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depends_on("r-s4vectors", type=("build", "run"), when="@:3.10.2")
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depends_on("r-scales", type=("build", "run"), when="@3.2.0:3.4.0")
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depends_on("r-rvcheck", type=("build", "run"), when="@3.4.0")
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depends_on("r-igraph", type=("build", "run"), when="@3.2.0:3.4.0")
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depends_on("r-do-db", type=("build", "run"))
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depends_on("r-do-db", when="@:3.22.1")
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