6add885bb2
* py-antspyx: new package Also adds required dependencies. Requires options to ITK to enable the right support libraries, and patches to remove tune the setup and provide resources rather than downloading libraries/"submodules" on the fly. * Fix patch URL * Style fixes. * bump version and re-include `git clone ...` as resource
95 lines
4.0 KiB
Python
95 lines
4.0 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class Itk(CMakePackage):
|
|
"""The Insight Toolkit (ITK) is an open-source, cross-platform toolkit for
|
|
N-dimensional scientific image processing, segmentation, and registration.
|
|
|
|
The Insight Toolkit (ITK) is an open-source, cross-platform toolkit for
|
|
N-dimensional scientific image processing, segmentation, and registration.
|
|
Segmentation is the process of identifying and classifying data found in a
|
|
digitally sampled representation. Typically the sampled representation is
|
|
an image acquired from such medical instrumentation as CT or MRI scanners.
|
|
Registration is the task of aligning or developing correspondences between
|
|
data. For example, in the medical environment, a CT scan may be aligned
|
|
with a MRI scan in order to combine the information contained in both."""
|
|
|
|
homepage = "https://itk.org/"
|
|
url = "https://github.com/InsightSoftwareConsortium/ITK/releases/download/v5.1.1/InsightToolkit-5.1.1.tar.gz"
|
|
|
|
maintainers("glennpj")
|
|
|
|
version("5.3.0", sha256="57a4471133dc8f76bde3d6eb45285c440bd40d113428884a1487472b7b71e383")
|
|
version("5.3rc02", sha256="163aaf4a6cecd5b70ff718c1a986c746581797212fd1b629fa81f12ae4756d14")
|
|
version(
|
|
"5.2.1",
|
|
sha256="192d41bcdd258273d88069094f98c61c38693553fd751b54f8cda308439555db",
|
|
preferred=True,
|
|
)
|
|
version("5.2.0", sha256="12c9cf543cbdd929330322f0a704ba6925a13d36d01fc721a74d131c0b82796e")
|
|
version("5.1.2", sha256="f1e5a78e11125348f68f655c6b89b617c3a8b2c09f710081f621054811a70c98")
|
|
version("5.1.1", sha256="39e2a63840054361b728878a35b21bbe38374682ffb4b5c4f8f8f7514dedb58e")
|
|
|
|
variant("review", default=False, description="enable modules under review")
|
|
variant("rtk", default=False, description="build the RTK (Reconstruction Toolkit module")
|
|
variant("minc", default=False, description="enable support for MINC files")
|
|
variant("antspy", default=False, description="enable support features for antspy")
|
|
|
|
# TODO: This will not work if the resource is pulled from a spack mirror.
|
|
# The build process will checkout the appropriate commit but it needs to be
|
|
# a git repository. The copy pulled from the mirror is not a git
|
|
# repository.
|
|
# NOTE: This problem is reflected in issues #8746 and #14344 and PR #9436.
|
|
# resource(
|
|
# name='RTK',
|
|
# git='https://github.com/SimonRit/RTK.git',
|
|
# get_full_repo=True,
|
|
# destination='Modules/Remote',
|
|
# when='+rtk',
|
|
# )
|
|
|
|
depends_on("git", type="build")
|
|
depends_on("perl", type="build")
|
|
|
|
depends_on("eigen")
|
|
depends_on("expat")
|
|
depends_on("fftw-api")
|
|
depends_on("googletest")
|
|
depends_on("hdf5+cxx")
|
|
depends_on("jpeg")
|
|
depends_on("libpng")
|
|
depends_on("libtiff")
|
|
depends_on("mpi")
|
|
depends_on("zlib")
|
|
|
|
def cmake_args(self):
|
|
use_mkl = "^mkl" in self.spec
|
|
args = [
|
|
self.define("BUILD_SHARED_LIBS", True),
|
|
self.define("ITK_USE_SYSTEM_LIBRARIES", True),
|
|
self.define("ITK_USE_MKL", use_mkl),
|
|
self.define_from_variant("Module_ITKReview", "review"),
|
|
self.define_from_variant("Module_RTK", "rtk"),
|
|
self.define_from_variant("Module_ITKIOMINC", "minc"),
|
|
self.define_from_variant("Module_ITKIOTransformMINC", "minc"),
|
|
self.define_from_variant("Module_MGHIO", "antspy"),
|
|
self.define_from_variant("Module_GenericLabelInterpolator", "antspy"),
|
|
self.define_from_variant("Module_AdaptiveDenoising", "antspy"),
|
|
]
|
|
|
|
if not use_mkl:
|
|
args.extend(
|
|
[
|
|
self.define("USE_FFTWD", True),
|
|
self.define("USE_FFTWF", True),
|
|
self.define("USE_SYSTEM_FFTW", True),
|
|
]
|
|
)
|
|
|
|
return args
|