34 lines
1.5 KiB
Python
34 lines
1.5 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RAffxparser(RPackage):
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"""Affymetrix File Parsing SDK.
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Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It
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provides methods for fast and memory efficient parsing of Affymetrix
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files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based
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files are supported. Currently, there are methods for reading chip
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definition file (CDF) and a cell intensity file (CEL). These files can
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be read either in full or in part. For example, probe signals from a few
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probesets can be extracted very quickly from a set of CEL files into a
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convenient list structure."""
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bioc = "affxparser"
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version("1.70.0", commit="28f94cd3477e9500942be89cbcb5cad1bbb369fe")
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version("1.68.1", commit="821a01a2df18115a3b7864b3f45418255b7123eb")
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version("1.66.0", commit="2ea72d4c924ac14bdd807b23563c8501c226ce3a")
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version("1.62.0", commit="b3e988e5c136c3f1a064e1da13730b403c8704c0")
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version("1.56.0", commit="20d27701ad2bdfacf34d857bb8ecb4f505b4d056")
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version("1.54.0", commit="dce83d23599a964086a84ced4afd13fc43e7cd4f")
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version("1.52.0", commit="8e0c4b89ee1cb4ff95f58a5dd947249dc718bc58")
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version("1.50.0", commit="01ef641727eadc2cc17b5dbb0b1432364436e3d5")
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version("1.48.0", commit="2461ea88f310b59c4a9a997a4b3dadedbd65a4aa")
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depends_on("r@2.14.0:", type=("build", "run"))
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