41 lines
1.9 KiB
Python
41 lines
1.9 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class RPhangorn(RPackage):
|
|
"""Phylogenetic Reconstruction and Analysis.
|
|
|
|
Allows for estimation of phylogenetic trees and networks using Maximum
|
|
Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.
|
|
Offers methods for tree comparison, model selection and visualization of
|
|
phylogenetic networks as described in Schliep et al. (2017)
|
|
<doi:10.1111/2041-210X.12760>."""
|
|
|
|
cran = "phangorn"
|
|
|
|
version("2.10.0", sha256="d153f87053a1e6eebf46be98fad3f118349008c559a6797b55613629cab85dce")
|
|
version("2.8.1", sha256="6d471410ae29775104a94746936e8c1c54c7273dd289333973ec06dad489dc75")
|
|
version("2.5.5", sha256="c58dc1ace26cb4358619a15da3ea4765dbdde1557acccc5103c85589a7571346")
|
|
version("2.5.3", sha256="a306585a0aabe7360a2adaf9116ae2993fb5ceff641b198f2e01e4329d3768af")
|
|
version("2.3.1", sha256="518c31f5b2c5f0a655d02a3c71b00c30caea2794dfc31f9d63f3d505bd7863eb")
|
|
|
|
depends_on("r@3.2.0:", type=("build", "run"))
|
|
depends_on("r@4.1.0:", type=("build", "run"), when="@2.8.1:")
|
|
depends_on("r-digest", type=("build", "run"), when="@2.10.0:")
|
|
depends_on("r-ape@5.0:", type=("build", "run"))
|
|
depends_on("r-ape@5.5:", type=("build", "run"), when="@2.8.1:")
|
|
depends_on("r-ape@5.6:", type=("build", "run"), when="@2.10.0:")
|
|
depends_on("r-fastmatch", type=("build", "run"))
|
|
depends_on("r-generics", type=("build", "run"), when="@2.10.0:")
|
|
depends_on("r-igraph@1.0:", type=("build", "run"))
|
|
depends_on("r-matrix", type=("build", "run"))
|
|
depends_on("r-quadprog", type=("build", "run"))
|
|
depends_on("r-rcpp", type=("build", "run"))
|
|
|
|
depends_on("r-rcpp@0.12.0:", type=("build", "run"), when="@:2.5.5")
|
|
depends_on("r-magrittr", type=("build", "run"), when="@:2.5.5")
|