39 lines
1.8 KiB
Python
39 lines
1.8 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RTopgo(RPackage):
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"""Enrichment Analysis for Gene Ontology.
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topGO package provides tools for testing GO terms while accounting for
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the topology of the GO graph. Different test statistics and different
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methods for eliminating local similarities and dependencies between GO
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terms can be implemented and applied."""
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bioc = "topGO"
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version("2.50.0", commit="befbff4e67c1b01e23f111d147274641a8b7b0f5")
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version("2.48.0", commit="a47f0079319c7d74db4aeda6399e06f12a34b585")
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version("2.46.0", commit="2bfa9dff41fff261aa6188f8368aebd6e8250b18")
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version("2.42.0", commit="3a33cf53883de45bda506953303e1809ab982adc")
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version("2.36.0", commit="c2f6c187b41c4aa44cc92ac781fdd878491a4019")
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version("2.34.0", commit="44cb5eaba515b365b7b2a8c22df0a45883db6b4d")
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version("2.32.0", commit="78ce3068fc06ae38d55219759fa177e2fcb3f596")
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version("2.30.1", commit="b1469ce1d198ccb73ef79ca22cab81659e16dbaa")
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version("2.28.0", commit="066a975d460046cce33fb27e74e6a0ebc33fd716")
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depends_on("r@2.10.0:", type=("build", "run"))
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depends_on("r-biocgenerics@0.13.6:", type=("build", "run"))
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depends_on("r-graph@1.14.0:", type=("build", "run"))
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depends_on("r-biobase@2.0.0:", type=("build", "run"))
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depends_on("r-go-db@2.3.0:", type=("build", "run"))
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depends_on("r-annotationdbi@1.7.19:", type=("build", "run"))
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depends_on("r-sparsem@0.73:", type=("build", "run"))
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depends_on("r-lattice", type=("build", "run"))
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depends_on("r-matrixstats", type=("build", "run"))
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depends_on("r-dbi", type=("build", "run"))
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