b984adb386
* bowtie: new versions and %gcc@8.0.0: fix Bowtie development shifted from Sourceforge to GitHub. This commit adds several versions from GitHub, using the archive tarballs. Note that the URL for 1.2.2 tarball is actually an '_p1' tag.... It leaves the old 1.2 release download info in place. Versions 1.2.0 and newer come from GitHub (I'm unsure if the 1.2 and 1.2.0 are equivalent). Include a fix that enables %gcc@8.0.0: from: https://github.com/BenLangmead/bowtie/issues/87 But, v1.2.2 has trouble with "newer" gcc's, so it only adds v1.2.2 for %gcc@6.0.0:. Feel free to tighten this. I know that: - 1.2 -> 1.2.2 work with %gcc@5.5.0; - 1.2 -> 1.2.1.1 work with %gcc@8.2.0; and - 1.2.2 fails with %gcc@8.2.0 * Tighten to `conflicts('%gcc@8:', when='@1.2.2')` * Point 1.2.2 and 1.2.2_p1 at the 1.2.2_p1 tarball
23 lines
842 B
Diff
23 lines
842 B
Diff
From 58c6ac97b1938909881877ef83167f5eff0e8ab1 Mon Sep 17 00:00:00 2001
|
|
From: Rone Charles <rone_charles@fastmail.com>
|
|
Date: Tue, 4 Sep 2018 21:06:39 -0400
|
|
Subject: [PATCH] Fix isa return type
|
|
|
|
---
|
|
ebwt.h | 2 +-
|
|
1 file changed, 1 insertion(+), 1 deletion(-)
|
|
|
|
diff --git a/ebwt.h b/ebwt.h
|
|
index fe6300cc..8f886b8d 100644
|
|
--- a/ebwt.h
|
|
+++ b/ebwt.h
|
|
@@ -862,7 +862,7 @@ class Ebwt {
|
|
TIndexOffU* ftab() const { return _ftab; }
|
|
TIndexOffU* eftab() const { return _eftab; }
|
|
TIndexOffU* offs() const { return _offs; }
|
|
- uint32_t* isa() const { return _isa; } /* check */
|
|
+ TIndexOffU* isa() const { return _isa; } /* check */
|
|
TIndexOffU* plen() const { return _plen; }
|
|
TIndexOffU* rstarts() const { return _rstarts; }
|
|
uint8_t* ebwt() const { return _ebwt; }
|