68baac0549
* Remove +mpi variant from NCO * Update NCO deps to AutotoolsPackage * Update the other NetCDF packages to AutotoolsPackage * ANTLR has a nolink deptype on java, don't worry about csharp * Remove restrictions from NCO package, fix homepage * Add version 4.6.3 of NCO * Missed AutotoolsPackage for NetCDF-CXX4 * NetCDF tests fail when run in parallel * Remove commented out dependency * Add documentation dependency
174 lines
7.2 KiB
Python
174 lines
7.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Netcdf(AutotoolsPackage):
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"""NetCDF is a set of software libraries and self-describing,
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machine-independent data formats that support the creation, access,
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and sharing of array-oriented scientific data."""
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homepage = "http://www.unidata.ucar.edu/software/netcdf"
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url = "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.3.tar.gz"
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version('4.4.1', '7843e35b661c99e1d49e60791d5072d8')
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version('4.4.0', 'cffda0cbd97fdb3a06e9274f7aef438e')
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version('4.3.3.1', '5c9dad3705a3408d27f696e5b31fb88c')
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version('4.3.3', '5fbd0e108a54bd82cb5702a73f56d2ae')
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variant('mpi', default=True, description='Enables MPI parallelism')
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variant('hdf4', default=False, description='Enable HDF4 support')
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variant('shared', default=True, description='Enable shared library')
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variant('parallel-netcdf', default=False, description='Enable PnetCDF support')
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variant('dap', default=False, description='Enable DAP support')
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variant('cdmremote', default=False, description='Enable CDM Remote support')
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# These variants control the number of dimensions (i.e. coordinates and
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# attributes) and variables (e.g. time, entity ID, number of coordinates)
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# that can be used in any particular NetCDF file.
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variant('maxdims', default=1024,
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description='Defines the maximum dimensions of NetCDF files.')
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variant('maxvars', default=8192,
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description='Defines the maximum variables of NetCDF files.')
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depends_on("m4", type='build')
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depends_on("hdf", when='+hdf4')
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depends_on("curl@7.18.0:", when='+dap')
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depends_on("curl@7.18.0:", when='+cdmremote')
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depends_on('parallel-netcdf', when='@4.2.1.1:+parallel-netcdf')
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# Required for NetCDF-4 support
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depends_on("zlib@1.2.5:")
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depends_on('hdf5')
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# NetCDF 4.4.0 and prior have compatibility issues with HDF5 1.10 and later
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# https://github.com/Unidata/netcdf-c/issues/250
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depends_on('hdf5@:1.8', when='@:4.4.0')
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def patch(self):
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try:
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max_dims = int(self.spec.variants['maxdims'].value)
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max_vars = int(self.spec.variants['maxvars'].value)
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except (ValueError, TypeError):
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raise TypeError('NetCDF variant values max[dims|vars] must be '
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'integer values.')
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ff = FileFilter(join_path('include', 'netcdf.h'))
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ff.filter(r'^(#define\s+NC_MAX_DIMS\s+)\d+(.*)$',
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r'\1{0}\2'.format(max_dims))
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ff.filter(r'^(#define\s+NC_MAX_VARS\s+)\d+(.*)$',
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r'\1{0}\2'.format(max_vars))
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def configure_args(self):
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spec = self.spec
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# Workaround until variant forwarding works properly
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if '+mpi' in spec and spec.satisfies('^hdf5~mpi'):
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raise RuntimeError('Invalid spec. Package netcdf requires '
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'hdf5+mpi, but spec asked for hdf5~mpi.')
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# Environment variables
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CFLAGS = []
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CPPFLAGS = []
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LDFLAGS = []
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LIBS = []
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config_args = [
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"--enable-fsync",
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"--enable-v2",
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"--enable-utilities",
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"--enable-static",
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"--enable-largefile",
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# necessary for HDF5 support
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"--enable-netcdf-4",
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"--enable-dynamic-loading",
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]
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if '+shared' in spec:
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config_args.append('--enable-shared')
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else:
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config_args.append('--disable-shared')
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# We don't have shared libraries but we still want it to be
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# possible to use this library in shared builds
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CFLAGS.append('-fPIC')
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if '+dap' in spec:
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config_args.append('--enable-dap')
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else:
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config_args.append('--disable-dap')
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if '+cdmremote' in spec:
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config_args.append('--enable-cdmremote')
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else:
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config_args.append('--disable-cdmremote')
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if '+dap' in spec or '+cdmremote' in spec:
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# Make sure Netcdf links against Spack's curl, otherwise it may
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# pick up system's curl, which can give link errors, e.g.:
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# undefined reference to `SSL_CTX_use_certificate_chain_file`
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LIBS.append("-lcurl")
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CPPFLAGS.append("-I%s" % spec['curl'].prefix.include)
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LDFLAGS.append("-L%s" % spec['curl'].prefix.lib)
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if '+mpi' in spec:
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config_args.append('--enable-parallel4')
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CPPFLAGS.append("-I%s/include" % spec['hdf5'].prefix)
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LDFLAGS.append("-L%s/lib" % spec['hdf5'].prefix)
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# HDF4 support
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# As of NetCDF 4.1.3, "--with-hdf4=..." is no longer a valid option
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# You must use the environment variables CPPFLAGS and LDFLAGS
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if '+hdf4' in spec:
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config_args.append("--enable-hdf4")
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CPPFLAGS.append("-I%s/include" % spec['hdf'].prefix)
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LDFLAGS.append("-L%s/lib" % spec['hdf'].prefix)
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LIBS.append("-l%s" % "jpeg")
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if '+szip' in spec:
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CPPFLAGS.append("-I%s/include" % spec['szip'].prefix)
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LDFLAGS.append("-L%s/lib" % spec['szip'].prefix)
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LIBS.append("-l%s" % "sz")
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# PnetCDF support
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if '+parallel-netcdf' in spec:
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config_args.append('--enable-pnetcdf')
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config_args.append('CC=%s' % spec['mpi'].mpicc)
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CPPFLAGS.append("-I%s/include" % spec['parallel-netcdf'].prefix)
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LDFLAGS.append("-L%s/lib" % spec['parallel-netcdf'].prefix)
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# Fortran support
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# In version 4.2+, NetCDF-C and NetCDF-Fortran have split.
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# Use the netcdf-fortran package to install Fortran support.
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config_args.append('CFLAGS=%s' % ' '.join(CFLAGS))
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config_args.append('CPPFLAGS=%s' % ' '.join(CPPFLAGS))
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config_args.append('LDFLAGS=%s' % ' '.join(LDFLAGS))
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config_args.append('LIBS=%s' % ' '.join(LIBS))
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return config_args
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def check(self):
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# h5_test fails when run in parallel
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make('check', parallel=False)
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