55 lines
2.2 KiB
Python
55 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Tppred(Package):
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"""TPPRED is a software package for the prediction of mitochondrial
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targeting peptides from protein primary sequence."""
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homepage = "https://tppred2.biocomp.unibo.it/tppred2/default/software"
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url = "http://biocomp.unibo.it/savojard/tppred2.tar.gz"
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version('2.0', 'cd848569f6a8aa51d18fbe55fe45d624')
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depends_on('python@2.7:2.999', type='run')
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depends_on('py-scikit-learn@0.13.1', type='run')
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depends_on('emboss')
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def url_for_version(self, version):
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url = 'http://biocomp.unibo.it/savojard/tppred{0}.tar.gz'
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return url.format(version.up_to(1))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir('bin'):
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install('tppred2.py', prefix.bin)
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install_tree('data', prefix.data)
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install_tree('example', prefix.example)
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install_tree('tppred2modules', prefix.modules)
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def setup_environment(self, spack_env, run_env):
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run_env.set('TPPRED_ROOT', prefix)
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