35 lines
1.2 KiB
Python
35 lines
1.2 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Msmc(MakefilePackage):
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"""This software implements MSMC, a method to infer population size
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and gene flow from multiple genome sequences"""
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homepage = "https://github.com/stschiff/msmc"
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url = "https://github.com/stschiff/msmc/archive/v1.1.0.tar.gz"
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version("1.1.0", sha256="989064400fe392ca3d2ac1a253ce7edf1801b6a7eeb77bbf2ff7bf67910216c4")
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depends_on("gsl", type=("build", "run"))
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depends_on("dmd", type="build")
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def edit(self, spec, prefix):
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filter_file(
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"dmd", join_path(self.spec["dmd"].prefix.linux.bin64, "dmd"), "Makefile", string=True
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)
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def build(self, spec, prefix):
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gsllibdir = self.spec["gsl"].prefix.lib
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libgsl = join_path(gsllibdir, "libgsl.a")
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libgslcblas = join_path(gsllibdir, "libgslcblas.a")
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make("GSL={0} {1}".format(libgsl, libgslcblas))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install_tree("build", prefix.bin)
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