34 lines
1.3 KiB
Python
34 lines
1.3 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Partitionfinder(Package):
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"""PartitionFinder is free open source software to select best-fit
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partitioning schemes and models of molecular evolution for
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phylogenetic analyses."""
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homepage = "https://github.com/brettc/partitionfinder"
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url = "https://github.com/brettc/partitionfinder/archive/v2.1.1.tar.gz"
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version("2.1.1", sha256="ccf3718996ee6ca496909b4b97d2b075028e0543eba3bc47a8c14b689c84e061")
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depends_on("python@2.7.10:2", type=("build", "run"))
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depends_on("py-numpy", type=("build", "run"))
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depends_on("py-pandas", type=("build", "run"))
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depends_on("py-tables", type=("build", "run"))
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depends_on("py-pyparsing", type=("build", "run"))
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depends_on("py-scipy", type=("build", "run"))
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depends_on("py-scikit-learn", type=("build", "run"))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install_tree("partfinder", prefix.partfinder)
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install_tree("timings", prefix.timings)
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install("PartitionFinderMorphology.py", prefix.bin)
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install("PartitionFinderProtein.py", prefix.bin)
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install("PartitionFinder.py", prefix.bin)
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