41 lines
1.9 KiB
Python
41 lines
1.9 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RBiocneighbors(RPackage):
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"""Nearest Neighbor Detection for Bioconductor Packages.
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Implements exact and approximate methods for nearest neighbor detection,
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in a framework that allows them to be easily switched within
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Bioconductor packages or workflows. Exact searches can be performed
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using the k-means for k-nearest neighbors algorithm or with vantage
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point trees. Approximate searches can be performed using the Annoy or
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HNSW libraries. Searching on either Euclidean or Manhattan distances is
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supported. Parallelization is achieved for all methods by using
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BiocParallel. Functions are also provided to search for all neighbors
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within a given distance."""
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bioc = "BiocNeighbors"
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version("1.18.0", commit="4b19ef2a76baa0b001c426bad540ab9295bec78e")
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version("1.16.0", commit="3b227beead424314aab5ef847222f8f4243c684f")
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version("1.14.0", commit="670a1bd4d82636d28fbff50cea2157e16bb1a858")
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version("1.12.0", commit="3c8a290f75adc944b408e6e77a36f3a0c1509c4c")
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version("1.8.2", commit="889bc91f8cb45d210b47ae5c0b9cfb86fb071ca2")
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version("1.2.0", commit="f754c6300f835142536a4594ddf750481e0fe273")
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version("1.0.0", commit="e252fc04b6d22097f2c5f74406e77d85e7060770")
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depends_on("r@3.5:", type=("build", "run"), when="@1.0.0")
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depends_on("r-rcpp", type=("build", "run"))
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depends_on("r-s4vectors", type=("build", "run"))
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depends_on("r-biocparallel", type=("build", "run"))
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depends_on("r-matrix", type=("build", "run"), when="@1.8.2:")
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depends_on("r-rcpphnsw", type=("build", "run"), when="@1.2.0:")
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depends_on("r-rcppannoy", type=("build", "run"), when="@:1.2.0")
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depends_on("r-biocgenerics", type=("build", "run"), when="@1.2.0")
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