30 lines
1.3 KiB
Python
30 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RExomedepth(RPackage):
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"""Calls copy number variants (CNVs) from targeted sequence data, typically
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exome sequencing experiments designed to identify the genetic basis of
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Mendelian disorders."""
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homepage = "https://cloud.r-project.org/package=ExomeDepth"
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url = "https://cloud.r-project.org/src/contrib/ExomeDepth_1.1.15.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/ExomeDepth"
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version('1.1.15', sha256='112bcb536f5766d9d0b55e064feedd6727ccab14cb1edfdba1f0d7b890e55ad2')
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depends_on('r@3.4.0:', type=('build', 'run'))
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depends_on('r-biostrings', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-rsamtools', type=('build', 'run'))
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depends_on('r-genomicranges@1.23.0:', type=('build', 'run'))
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depends_on('r-aod', type=('build', 'run'))
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depends_on('r-vgam@0.8.4:', type=('build', 'run'))
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depends_on('r-genomicalignments', type=('build', 'run'))
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depends_on('r-dplyr', type=('build', 'run'))
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depends_on('r-magrittr', type=('build', 'run'))
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