18c2f1a57a
Explicitly import package utilities in all packages, and corresponding fallout.
This includes:
* rename `spack.package` to `spack.package_base`
* rename `spack.pkgkit` to `spack.package`
* update all packages in builtin, builtin_mock and tutorials to include `from spack.package import *`
* update spack style
* ensure packages include the import
* automatically add the new import and remove any/all imports of `spack` and `spack.pkgkit`
from packages when using `--fix`
* add support for type-checking packages with mypy when SPACK_MYPY_CHECK_PACKAGES
is set in the environment
* fix all type checking errors in packages in spack upstream
* update spack create to include the new imports
* update spack repo to inject the new import, injection persists to allow for a deprecation period
Original message below:
As requested @adamjstewart, update all packages to use pkgkit. I ended up using isort to do this,
so repro is easy:
```console
$ isort -a 'from spack.pkgkit import *' --rm 'spack' ./var/spack/repos/builtin/packages/*/package.py
$ spack style --fix
```
There were several line spacing fixups caused either by space manipulation in isort or by packages
that haven't been touched since we added requirements, but there are no functional changes in here.
* [x] add config to isort to make sure this is maintained going forward
177 lines
8.5 KiB
Python
177 lines
8.5 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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from spack.pkg.builtin.boost import Boost
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class Fenics(CMakePackage):
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"""FEniCS is organized as a collection of interoperable components
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that together form the FEniCS Project. These components include
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the problem-solving environment DOLFIN, the form compiler FFC, the
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finite element tabulator FIAT, the just-in-time compiler Instant / Dijitso,
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the code generation interface UFC, the form language UFL and a range of
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additional components."""
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homepage = "https://fenicsproject.org/"
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git = "https://bitbucket.org/fenics-project/dolfin.git"
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url = "https://bitbucket.org/fenics-project/dolfin/downloads/dolfin-2019.1.0.post0.tar.gz"
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version('2019.1.0.post0', sha256='61abdcdb13684ba2a3ba4afb7ea6c7907aa0896a46439d3af7e8848483d4392f')
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version('2018.1.0.post1', sha256='425cc49b90e0f5c2ebdd765ba9934b1ada97e2ac2710d982d6d267a5e2c5982d')
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# Pre 2018.1.0 versions are deprecated due to expected compatibility issues
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version('2017.2.0.post0',
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sha256='d3c40cd8c1c882f517999c25ea4220adcd01dbb1d829406fce99b1fc40184c82',
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deprecated=True)
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version('2016.2.0',
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sha256='c6760996660a476f77889e11e4a0bc117cc774be0eec777b02a7f01d9ce7f43d',
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deprecated=True)
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dolfin_versions = ['2019.1.0', '2018.1.0', '2017.2.0', '2016.2.0']
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variant('python', default=True, description='Compile with Python interface')
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variant('hdf5', default=True, description='Compile with HDF5')
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variant('parmetis', default=True, description='Compile with ParMETIS')
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variant('scotch', default=True, description='Compile with Scotch')
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variant('petsc', default=True, description='Compile with PETSc')
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variant('slepc', default=True, description='Compile with SLEPc')
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variant('petsc4py', default=True, description='Use PETSC4py')
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variant('slepc4py', default=True, description='Use SLEPc4py')
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variant('trilinos', default=False, description='Compile with Trilinos')
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variant('suite-sparse', default=True,
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description='Compile with SuiteSparse solvers')
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variant('vtk', default=False, description='Compile with VTK')
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variant('qt', default=False, description='Compile with QT')
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variant('zlib', default=False, description='Compile with ZLIB')
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variant('mpi', default=True,
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description='Enables the distributed memory support')
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variant('openmp', default=True,
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description='Enables the shared memory support')
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variant('shared', default=True,
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description='Enables the build of shared libraries')
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variant('doc', default=False,
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description='Builds the documentation')
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variant('build_type', default='RelWithDebInfo',
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description='The build type to build',
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values=('Debug', 'Release', 'RelWithDebInfo',
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'MinSizeRel', 'Developer'))
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# Conflics for PETSC4PY / SLEPC4PY
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conflicts('+petsc4py', when='~python')
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conflicts('+petsc4py', when='~petsc')
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conflicts('+slepc4py', when='~python')
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conflicts('+slepc4py', when='~slepc')
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# Patches
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# patch('petsc-3.7.patch', when='petsc@3.7:')
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patch('header_fix.patch', when='@2019.1.0.post0')
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# endian.hpp for byte order detection was removed with Boost 1.73,
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# use __BYTE_ORDER__ instead
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patch('https://bitbucket.org/fenics-project/dolfin/issues/attachments/1116/fenics-project/dolfin/1602778118.04/1116/0001-Use-__BYTE_ORDER__-instead-of-removed-Boost-endian.h.patch',
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sha256='1cc69e612df18feb5ebdc78cd902cfefda5ffc077735f0b67a1dcb1bf82e63c9',
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when='@2019.1.0.post0')
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patch('petsc_3_11.patch', when='@2018.1.0.post1')
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# enable extension support for fenics package
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extends('python', when='+python')
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# fenics python package dependencies
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for ver in dolfin_versions:
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wver = '@' + ver
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depends_on('py-fenics-fiat{0}'.format(wver), type=('build', 'run'), when=wver + '+python')
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if(Version(ver) < Version('2018.1.0')):
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depends_on('py-fenics-instant{0}'.format(wver), type=('build', 'run'), when=wver + '+python')
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else:
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depends_on('py-fenics-dijitso{0}'.format(wver), type=('build', 'run'), when=wver + '+python')
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depends_on('py-fenics-ufl{0}'.format(wver), type=('build', 'run'), when=wver + '+python')
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if ver in ['2019.1.0', '2017.2.0']:
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wver = '@' + ver + '.post0'
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depends_on('py-fenics-ffc{0}'.format(wver), type=('build', 'run'), when=wver + '+python')
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# package dependencies
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depends_on('python@3.5:', type=('build', 'run'), when='+python')
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depends_on('eigen@3.2.0:')
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depends_on('pkgconfig', type='build')
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depends_on('zlib', when='+zlib')
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depends_on('boost+filesystem+program_options+system+iostreams+timer+regex+chrono')
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depends_on('boost+filesystem+program_options+system+iostreams+timer+regex+chrono@1.68.0', when='@:2018')
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on('mpi', when='+mpi')
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depends_on('hdf5@:1.10+hl+fortran', when='+hdf5+petsc')
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depends_on('hdf5@:1.10+hl', when='+hdf5~petsc')
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depends_on('metis+real64', when='+parmetis')
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depends_on('parmetis', when='+parmetis')
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depends_on('scotch~metis', when='+scotch~mpi')
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depends_on('scotch+mpi~metis', when='+scotch+mpi')
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depends_on('petsc', when='+petsc')
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depends_on('slepc', when='+slepc')
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depends_on('py-petsc4py@3.6:', when='+petsc+python')
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depends_on('trilinos', when='+trilinos')
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depends_on('vtk', when='+vtk')
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depends_on('suite-sparse', when='+suite-sparse')
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depends_on('qt', when='+qt')
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depends_on('py-pybind11@2.2.4', type=('build', 'run'))
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depends_on('cmake@3.17.3:', type='build')
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depends_on('py-pip', when='+python', type='build')
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depends_on('py-wheel', when='+python', type='build')
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depends_on('py-setuptools', type='build', when='+python')
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depends_on('py-pkgconfig', type=('build', 'run'), when='+python')
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depends_on('py-sphinx@1.0.1:', when='+doc', type='build')
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def cmake_args(self):
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args = [
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self.define_from_variant('BUILD_SHARED_LIBS', 'shared'),
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self.define('DOLFIN_SKIP_BUILD_TESTS', True),
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self.define_from_variant('DOLFIN_ENABLE_OPENMP', 'openmp'),
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self.define_from_variant('DOLFIN_ENABLE_CHOLMOD', 'suite-sparse'),
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self.define_from_variant('DOLFIN_ENABLE_HDF5', 'hdf5'),
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self.define_from_variant('HDF5_NO_FIND_PACKAGE_CONFIG_FILE', 'hdf5'),
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self.define_from_variant('DOLFIN_ENABLE_MPI', 'mpi'),
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self.define_from_variant('DOLFIN_ENABLE_PARMETIS', 'parmetis'),
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self.define_from_variant('DOLFIN_ENABLE_PETSC', 'petsc'),
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self.define_from_variant('DOLFIN_ENABLE_PETSC4PY', 'petsc4py'),
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self.define_from_variant('DOLFIN_ENABLE_PYTHON', 'python'),
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self.define_from_variant('DOLFIN_ENABLE_QT', 'qt'),
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self.define_from_variant('DOLFIN_ENABLE_SCOTCH', 'scotch'),
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self.define_from_variant('DOLFIN_ENABLE_SLEPC', 'slepc'),
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self.define_from_variant('DOLFIN_ENABLE_SLEPC4PY', 'slepc4py'),
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self.define_from_variant('DOLFIN_ENABLE_DOCS', 'doc'),
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self.define_from_variant('DOLFIN_ENABLE_SPHINX', 'doc'),
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self.define_from_variant('DOLFIN_ENABLE_TRILINOS', 'trilinos'),
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self.define_from_variant('DOLFIN_ENABLE_UMFPACK', 'suite-sparse'),
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self.define_from_variant('DOLFIN_ENABLE_VTK', 'vtk'),
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self.define_from_variant('DOLFIN_ENABLE_ZLIB', 'zlib'),
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]
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if '+python' in self.spec:
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args.append(self.define(
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'PYTHON_EXECUTABLE', self.spec['python'].command.path))
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return args
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# set environment for bulding python interface
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def setup_build_environment(self, env):
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env.set('DOLFIN_DIR', self.prefix)
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def setup_run_environment(self, env):
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env.set('DOLFIN_DIR', self.prefix)
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# build python interface of dolfin
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@run_after('install')
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def install_python_interface(self):
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if '+python' in self.spec:
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with working_dir('python'):
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args = std_pip_args + ['--prefix=' + self.prefix, '.']
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pip(*args)
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